Protein–RNA interactions for Protein: Q9NRR4

DROSHA, Ribonuclease 3, humanhuman

Known RBP eCLIP

Length 1,374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DROSHAQ9NRR4 TAPBP-235ENST00000437116 1239 ntTSL 1 (best)28.39■■■□□ 2.143e-6■■□□□ 11.9
DROSHAQ9NRR4 TAPBP-240ENST00000480730 2202 ntTSL 1 (best)27.13■■□□□ 1.933e-6■■□□□ 11.9
DROSHAQ9NRR4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.783e-6■■□□□ 11.9
DROSHAQ9NRR4 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC24.66■■□□□ 1.543e-6■■□□□ 11.9
DROSHAQ9NRR4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC24.5■■□□□ 1.513e-6■■□□□ 11.9
DROSHAQ9NRR4 TAPBP-239ENST00000476333 726 ntTSL 224.4■■□□□ 1.53e-6■■□□□ 11.9
DROSHAQ9NRR4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC24.17■■□□□ 1.462e-11■■□□□ 11.9
DROSHAQ9NRR4 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.153e-6■■□□□ 11.9
DROSHAQ9NRR4 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC22.11■■□□□ 1.133e-6■■□□□ 11.9
DROSHAQ9NRR4 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.982e-11■■□□□ 11.9
DROSHAQ9NRR4 TAPBP-237ENST00000467025 751 ntTSL 319.67■□□□□ 0.743e-6■■□□□ 11.9
DROSHAQ9NRR4 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.623e-6■■□□□ 11.9
DROSHAQ9NRR4 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC18.48■□□□□ 0.553e-6■■□□□ 11.9
DROSHAQ9NRR4 CALM3-204ENST00000482455 650 ntTSL 412.72□□□□□ -0.372e-11■■□□□ 11.9
DROSHAQ9NRR4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC30.28■■■□□ 2.448e-8■■□□□ 11.8
DROSHAQ9NRR4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC29.5■■■□□ 2.318e-8■■□□□ 11.8
DROSHAQ9NRR4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC28.95■■■□□ 2.228e-8■■□□□ 11.8
DROSHAQ9NRR4 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.698e-8■■□□□ 11.8
DROSHAQ9NRR4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC25.21■■□□□ 1.638e-8■■□□□ 11.8
DROSHAQ9NRR4 SELENOF-205ENST00000469566 831 ntTSL 214.77□□□□□ -0.048e-8■■□□□ 11.8
DROSHAQ9NRR4 SELENOF-204ENST00000467557 499 ntTSL 511.84□□□□□ -0.518e-8■■□□□ 11.8
DROSHAQ9NRR4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC24.79■■□□□ 1.568e-8■■□□□ 11.8
DROSHAQ9NRR4 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -18e-8■■□□□ 11.8
DROSHAQ9NRR4 UBAC1-203ENST00000471163 838 ntTSL 325.07■■□□□ 1.64e-7■■□□□ 11.8
DROSHAQ9NRR4 SRSF6-202ENST00000483871 1680 ntTSL 221.5■■□□□ 1.032e-17■■□□□ 11.8
DROSHAQ9NRR4 SRSF6-201ENST00000244020 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.422e-17■■□□□ 11.8
DROSHAQ9NRR4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC28.27■■■□□ 2.121e-6■■□□□ 11.8
DROSHAQ9NRR4 PPP1R12C-203ENST00000586197 472 ntTSL 524.16■■□□□ 1.461e-6■■□□□ 11.8
DROSHAQ9NRR4 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC21.46■■□□□ 1.032e-6■■□□□ 11.8
DROSHAQ9NRR4 PHF19-202ENST00000373896 4241 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.242e-6■■□□□ 11.8
DROSHAQ9NRR4 PHF19-214ENST00000616568 4159 ntTSL 1 (best) BASIC13.12□□□□□ -0.312e-6■■□□□ 11.8
DROSHAQ9NRR4 MT-TG-201ENST00000387429 68 ntBASIC-2.21□□□□□ -2.764e-58■■□□□ 11.8
DROSHAQ9NRR4 AARS-207ENST00000569825 871 ntTSL 226.21■■□□□ 1.792e-7■■□□□ 11.8
DROSHAQ9NRR4 SSR4-209ENST00000482902 2409 ntTSL 225.78■■□□□ 1.726e-8■■□□□ 11.8
DROSHAQ9NRR4 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.646e-8■■□□□ 11.8
DROSHAQ9NRR4 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC24.94■■□□□ 1.586e-8■■□□□ 11.8
DROSHAQ9NRR4 SSR4-212ENST00000491833 921 ntTSL 323.23■■□□□ 1.316e-8■■□□□ 11.8
DROSHAQ9NRR4 SSR4-208ENST00000471880 785 ntTSL 522.51■■□□□ 1.196e-8■■□□□ 11.8
DROSHAQ9NRR4 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.156e-8■■□□□ 11.8
DROSHAQ9NRR4 SSR4-207ENST00000471724 443 ntTSL 321.54■■□□□ 1.046e-8■■□□□ 11.8
DROSHAQ9NRR4 SSR4-206ENST00000460616 2482 ntTSL 221.21■□□□□ 0.996e-8■■□□□ 11.8
DROSHAQ9NRR4 SSR4-202ENST00000370085 526 ntTSL 2 BASIC21■□□□□ 0.956e-8■■□□□ 11.8
DROSHAQ9NRR4 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC23.45■■□□□ 1.343e-6■■□□□ 11.8
DROSHAQ9NRR4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.153e-6■■□□□ 11.8
DROSHAQ9NRR4 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC41.03■■■■■ 4.161e-18■■□□□ 11.8
DROSHAQ9NRR4 GSTP1-205ENST00000494593 1681 ntTSL 230.15■■■□□ 2.421e-18■■□□□ 11.8
DROSHAQ9NRR4 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC21.84■■□□□ 1.091e-18■■□□□ 11.8
DROSHAQ9NRR4 GSTP1-204ENST00000489040 523 ntTSL 221.84■■□□□ 1.091e-18■■□□□ 11.8
DROSHAQ9NRR4 GSTP1-207ENST00000498765 723 ntTSL 315.12■□□□□ 0.011e-18■■□□□ 11.8
DROSHAQ9NRR4 SPHK1-208ENST00000591651 541 ntTSL 432.01■■■□□ 2.713e-6■■□□□ 11.8
DROSHAQ9NRR4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC29.83■■■□□ 2.373e-6■■□□□ 11.8
DROSHAQ9NRR4 SPHK1-205ENST00000588682 858 ntTSL 329.5■■■□□ 2.313e-6■■□□□ 11.8
DROSHAQ9NRR4 SPHK1-209ENST00000591762 2502 ntTSL 225.67■■□□□ 1.73e-6■■□□□ 11.8
DROSHAQ9NRR4 TPM3-220ENST00000509601 543 ntTSL 427.66■■■□□ 2.023e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-219ENST00000509409 1248 ntTSL 223.92■■□□□ 1.423e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC22.34■■□□□ 1.173e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC22.04■■□□□ 1.123e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC21.38■■□□□ 1.013e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC21.13■□□□□ 0.973e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-216ENST00000473036 746 ntTSL 220.16■□□□□ 0.823e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC19.42■□□□□ 0.73e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-223ENST00000611659 3149 ntTSL 3 BASIC16.38■□□□□ 0.213e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-207ENST00000341372 2007 ntTSL 5 BASIC15.77■□□□□ 0.113e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-210ENST00000368530 1523 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.073e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-212ENST00000368533 3131 ntTSL 1 (best) BASIC15.4■□□□□ 0.063e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-209ENST00000368527 569 ntTSL 415.1■□□□□ 0.013e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-201ENST00000271850 1219 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.123e-7■■□□□ 11.8
DROSHAQ9NRR4 TPM3-215ENST00000469717 4041 ntTSL 210.61□□□□□ -0.713e-7■■□□□ 11.8
DROSHAQ9NRR4 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC32.04■■■□□ 2.724e-6■■□□□ 11.8
DROSHAQ9NRR4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.534e-6■■□□□ 11.8
DROSHAQ9NRR4 CD55-209ENST00000488171 1389 ntTSL 330■■■□□ 2.394e-6■■□□□ 11.8
DROSHAQ9NRR4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.114e-6■■□□□ 11.8
DROSHAQ9NRR4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC27.18■■□□□ 1.944e-6■■□□□ 11.8
DROSHAQ9NRR4 CD55-202ENST00000343420 978 ntTSL 526.02■■□□□ 1.764e-6■■□□□ 11.8
DROSHAQ9NRR4 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.354e-6■■□□□ 11.8
DROSHAQ9NRR4 NOP58-207ENST00000478941 508 ntTSL 39.59□□□□□ -0.876e-15■■□□□ 11.8
DROSHAQ9NRR4 SNORD70.1-201ENST00000391007 85 ntBASIC1.33□□□□□ -2.26e-15■■□□□ 11.8
DROSHAQ9NRR4 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC34.09■■■■□ 3.056e-7■■□□□ 11.8
DROSHAQ9NRR4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.436e-7■■□□□ 11.8
DROSHAQ9NRR4 TMED4-204ENST00000477639 1950 ntTSL 230.17■■■□□ 2.426e-7■■□□□ 11.8
DROSHAQ9NRR4 TMED4-202ENST00000444131 545 ntTSL 429.23■■■□□ 2.276e-7■■□□□ 11.8
DROSHAQ9NRR4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC29.03■■■□□ 2.246e-7■■□□□ 11.8
DROSHAQ9NRR4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC29.15■■■□□ 2.263e-6■■□□□ 11.8
DROSHAQ9NRR4 MELTF-203ENST00000439320 629 ntTSL 327.4■■□□□ 1.983e-6■■□□□ 11.8
DROSHAQ9NRR4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.993e-6■■□□□ 11.8
DROSHAQ9NRR4 MCM2-208ENST00000480910 693 ntTSL 235.39■■■■□ 3.263e-13■■□□□ 11.8
DROSHAQ9NRR4 GABBR1-213ENST00000485508 825 ntTSL 534.09■■■■□ 3.053e-13■■□□□ 11.8
DROSHAQ9NRR4 GABBR1-216ENST00000489385 871 ntTSL 532.23■■■□□ 2.753e-13■■□□□ 11.8
DROSHAQ9NRR4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC29.25■■■□□ 2.273e-13■■□□□ 11.8
DROSHAQ9NRR4 SLC4A2-205ENST00000463414 793 ntTSL 326.41■■□□□ 1.823e-13■■□□□ 11.8
DROSHAQ9NRR4 GABBR1-220ENST00000494877 2364 ntTSL 525.42■■□□□ 1.663e-13■■□□□ 11.8
DROSHAQ9NRR4 SLC4A2-215ENST00000488420 610 ntTSL 324.75■■□□□ 1.553e-13■■□□□ 11.8
DROSHAQ9NRR4 MCM2-206ENST00000474964 2847 ntTSL 224.51■■□□□ 1.513e-13■■□□□ 11.8
DROSHAQ9NRR4 SLC4A2-212ENST00000482950 500 ntTSL 423.16■■□□□ 1.33e-13■■□□□ 11.8
DROSHAQ9NRR4 MCM2-204ENST00000472731 547 ntTSL 221.7■■□□□ 1.063e-13■■□□□ 11.8
DROSHAQ9NRR4 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.53e-13■■□□□ 11.8
DROSHAQ9NRR4 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.363e-13■■□□□ 11.8
DROSHAQ9NRR4 GABBR1-201ENST00000355973 3506 ntTSL 2 BASIC17■□□□□ 0.313e-13■■□□□ 11.8
DROSHAQ9NRR4 SLC4A2-204ENST00000461735 4387 ntTSL 1 (best) BASIC16.49■□□□□ 0.233e-13■■□□□ 11.8
DROSHAQ9NRR4 GABBR1-203ENST00000377012 4104 ntTSL 1 (best) BASIC16.08■□□□□ 0.173e-13■■□□□ 11.8
Retrieved 100 of 16,331 protein–RNA pairs in 81.2 ms