RNA–Protein interactions for RNA: ENST00000368530.6

TPM3-210, Transcript of tropomyosin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TPM3, Length 1,523 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-210ENST00000368530 NISCHQ9Y2I1 1504 aa24.6■■□□□ 1.53
TPM3-210ENST00000368530 AEBP2Q6ZN18 517 aaPredicted RBP22.27■■□□□ 1.16
TPM3-210ENST00000368530 ABCC9O60706 1549 aa22.21■■□□□ 1.15
TPM3-210ENST00000368530 CCDC180Q9P1Z9 1646 aa22.05■■□□□ 1.12
TPM3-210ENST00000368530 CHIC1Q5VXU3 224 aa21.79■■□□□ 1.08
TPM3-210ENST00000368530 DNAJC5BQ9UF47 199 aa21.08■□□□□ 0.96
TPM3-210ENST00000368530 RB1CC1Q8TDY2 1594 aa21.06■□□□□ 0.96
TPM3-210ENST00000368530 NACADO15069 1562 aa20.91■□□□□ 0.94
TPM3-210ENST00000368530 DCAF8L2P0C7V8 631 aa20.77■□□□□ 0.92
TPM3-210ENST00000368530 PABPN1Q86U42 306 aaKnown RBP eCLIP20.71■□□□□ 0.91
TPM3-210ENST00000368530 MYO15BQ96JP2 1530 aa20.63■□□□□ 0.89
TPM3-210ENST00000368530 UNC13AQ9UPW8 1703 aa20.57■□□□□ 0.88
TPM3-210ENST00000368530 BICRAQ9NZM4 1560 aa20.53■□□□□ 0.88
TPM3-210ENST00000368530 ZCCHC6Q5VYS8 1495 aaKnown RBP20.35■□□□□ 0.85
TPM3-210ENST00000368530 DCAF1Q9Y4B6 1507 aa20.31■□□□□ 0.84
TPM3-210ENST00000368530 SHROOM4Q9ULL8 1493 aa20.19■□□□□ 0.82
TPM3-210ENST00000368530 SCRIBQ14160 1630 aa20.09■□□□□ 0.81
TPM3-210ENST00000368530 CC2D2AQ9P2K1 1620 aa20.05■□□□□ 0.8
TPM3-210ENST00000368530 CECR2Q9BXF3 1484 aa20.03■□□□□ 0.8
TPM3-210ENST00000368530 EIF4G1Q04637 1599 aaKnown RBP19.99■□□□□ 0.79
TPM3-210ENST00000368530 DNAJC5Q9H3Z4 198 aa19.4■□□□□ 0.7
TPM3-210ENST00000368530 NCAPD3P42695 1498 aa19.37■□□□□ 0.69
TPM3-210ENST00000368530 ATAD2BQ9ULI0 1458 aa19.27■□□□□ 0.68
TPM3-210ENST00000368530 PHF23Q9BUL5 403 aaPredicted RBP19.23■□□□□ 0.67
TPM3-210ENST00000368530 CUX2O14529 1486 aa19.19■□□□□ 0.66
TPM3-210ENST00000368530 SMARCA4P51532 1647 aa19.17■□□□□ 0.66
TPM3-210ENST00000368530 SMARCA2P51531 1590 aa19.15■□□□□ 0.66
TPM3-210ENST00000368530 HMGXB3Q12766 1538 aa19.15■□□□□ 0.66
TPM3-210ENST00000368530 ERCC6Q03468 1493 aa19.13■□□□□ 0.65
TPM3-210ENST00000368530 NESP48681 1621 aa19.08■□□□□ 0.65
TPM3-210ENST00000368530 BAZ1AQ9NRL2 1556 aaPredicted RBP19.06■□□□□ 0.64
TPM3-210ENST00000368530 PEG3Q9GZU2 1588 aa19.03■□□□□ 0.64
TPM3-210ENST00000368530 BAZ1BQ9UIG0 1483 aaKnown RBP19.02■□□□□ 0.64
TPM3-210ENST00000368530 MROH2BQ7Z745 1585 aa18.97■□□□□ 0.63
TPM3-210ENST00000368530 LAMC3Q9Y6N6 1575 aa18.88■□□□□ 0.61
TPM3-210ENST00000368530 THOC2Q8NI27 1593 aaKnown RBP18.87■□□□□ 0.61
TPM3-210ENST00000368530 SENP3Q9H4L4 574 aaPredicted RBP18.79■□□□□ 0.6
TPM3-210ENST00000368530 PDS5BQ9NTI5 1447 aa18.78■□□□□ 0.6
TPM3-210ENST00000368530 CADPSQ9ULU8 1353 aa18.76■□□□□ 0.59
TPM3-210ENST00000368530 KIF21AQ7Z4S6 1674 aa18.75■□□□□ 0.59
TPM3-210ENST00000368530 WIZO95785 1651 aa18.69■□□□□ 0.58
TPM3-210ENST00000368530 MRC2Q9UBG0 1479 aa18.63■□□□□ 0.57
TPM3-210ENST00000368530 WDR62O43379 1518 aa18.6■□□□□ 0.57
TPM3-210ENST00000368530 RSF1Q96T23 1441 aaPredicted RBP18.55■□□□□ 0.56
TPM3-210ENST00000368530 CFTRP13569 1480 aa18.52■□□□□ 0.56
TPM3-210ENST00000368530 FANCD2Q9BXW9 1451 aa18.52■□□□□ 0.55
TPM3-210ENST00000368530 CEP164Q9UPV0 1460 aa18.52■□□□□ 0.55
TPM3-210ENST00000368530 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
TPM3-210ENST00000368530 TRIM41Q8WV44 630 aa18.4■□□□□ 0.54
TPM3-210ENST00000368530 URB2Q14146 1524 aaKnown RBP18.4■□□□□ 0.54
TPM3-210ENST00000368530 OSCARQ8IYS5 282 aa18.33■□□□□ 0.52
TPM3-210ENST00000368530 CCDC88BA6NC98 1476 aa18.28■□□□□ 0.52
TPM3-210ENST00000368530 ZNF608Q9ULD9 1512 aaPredicted RBP18.2■□□□□ 0.5
TPM3-210ENST00000368530 PRDM2Q13029 1718 aa18.19■□□□□ 0.5
TPM3-210ENST00000368530 IFT140Q96RY7 1462 aa18.17■□□□□ 0.5
TPM3-210ENST00000368530 TOPBP1Q92547 1522 aa18.15■□□□□ 0.5
TPM3-210ENST00000368530 ABCC8Q09428 1581 aa18.08■□□□□ 0.48
TPM3-210ENST00000368530 RIMBP3CA6NJZ7 1639 aa18.05■□□□□ 0.48
TPM3-210ENST00000368530 RIMBP3BA6NNM3 1639 aa18.05■□□□□ 0.48
TPM3-210ENST00000368530 RIMBP3Q9UFD9 1639 aa18.05■□□□□ 0.48
TPM3-210ENST00000368530 DNMBPQ6XZF7 1577 aa18.05■□□□□ 0.48
TPM3-210ENST00000368530 EIF4G3O43432 1585 aaKnown RBP18.02■□□□□ 0.47
TPM3-210ENST00000368530 TARBP1Q13395 1621 aaKnown RBP18.01■□□□□ 0.47
TPM3-210ENST00000368530 AQRO60306 1485 aaKnown RBP eCLIP18.01■□□□□ 0.474e-7■■□□□ 12.7
TPM3-210ENST00000368530 ARHGEF11O15085 1522 aa18.01■□□□□ 0.47
TPM3-210ENST00000368530 POLA1P09884 1462 aaPredicted RBP17.97■□□□□ 0.47
TPM3-210ENST00000368530 RAD54L2Q9Y4B4 1467 aa17.92■□□□□ 0.46
TPM3-210ENST00000368530 CYB5RLQ6IPT4 315 aa17.9■□□□□ 0.46
TPM3-210ENST00000368530 SOGA1O94964 1423 aa17.89■□□□□ 0.45
TPM3-210ENST00000368530 TDRD9Q8NDG6 1382 aaKnown RBP17.89■□□□□ 0.45
TPM3-210ENST00000368530 CHD1O14646 1710 aa17.88■□□□□ 0.45
TPM3-210ENST00000368530 FBLN2P98095 1184 aa17.86■□□□□ 0.45
TPM3-210ENST00000368530 ARAP1Q96P48 1450 aa17.84■□□□□ 0.45
TPM3-210ENST00000368530 FGD5Q6ZNL6 1462 aa17.82■□□□□ 0.44
TPM3-210ENST00000368530 CUX1P39880 1505 aa17.81■□□□□ 0.44
TPM3-210ENST00000368530 SNAPC4Q5SXM2 1469 aa17.79■□□□□ 0.44
TPM3-210ENST00000368530 WDR97A6NE52 1622 aa17.76■□□□□ 0.43
TPM3-210ENST00000368530 CLASP1Q7Z460 1538 aa17.75■□□□□ 0.43
TPM3-210ENST00000368530 GRIN2BQ13224 1484 aa17.73■□□□□ 0.43
TPM3-210ENST00000368530 MAGI1Q96QZ7 1491 aaPredicted RBP17.73■□□□□ 0.43
TPM3-210ENST00000368530 CHMP7Q8WUX9 453 aaPredicted RBP17.72■□□□□ 0.43
TPM3-210ENST00000368530 PLPPR3Q6T4P5 718 aa17.72■□□□□ 0.43
TPM3-210ENST00000368530 SYNJ2O15056 1496 aa17.68■□□□□ 0.42
TPM3-210ENST00000368530 TRHP20396 242 aaPredicted RBP17.68■□□□□ 0.42
TPM3-210ENST00000368530 SYNJ1O43426 1573 aa17.66■□□□□ 0.42
TPM3-210ENST00000368530 GAPVD1Q14C86 1478 aa17.66■□□□□ 0.42
TPM3-210ENST00000368530 ABCA10Q8WWZ4 1543 aa17.63■□□□□ 0.41
TPM3-210ENST00000368530 ABCA5Q8WWZ7 1642 aa17.59■□□□□ 0.41
TPM3-210ENST00000368530 SUPT5HO00267 1087 aaKnown RBP17.58■□□□□ 0.41
TPM3-210ENST00000368530 PBRM1Q86U86 1689 aa17.58■□□□□ 0.4
TPM3-210ENST00000368530 WRNQ14191 1432 aaPredicted RBP eCLIP17.52■□□□□ 0.49e-7■■■□□ 18.8
TPM3-210ENST00000368530 GRIN2AQ12879 1464 aa17.5■□□□□ 0.39
TPM3-210ENST00000368530 FOXD1Q16676 465 aa17.49■□□□□ 0.39
TPM3-210ENST00000368530 NUP160Q12769 1436 aa17.48■□□□□ 0.39
TPM3-210ENST00000368530 ERCC6L2Q5T890 1561 aa17.48■□□□□ 0.39
TPM3-210ENST00000368530 TOP2BQ02880 1626 aa17.46■□□□□ 0.39
TPM3-210ENST00000368530 BIVM-ERCC5R4GMW8 1640 aa17.45■□□□□ 0.38
TPM3-210ENST00000368530 ADAMTS12P58397 1594 aa17.45■□□□□ 0.38
TPM3-210ENST00000368530 CEP170Q5SW79 1584 aa17.45■□□□□ 0.38
TPM3-210ENST00000368530 FHAD1B1AJZ9 1412 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms