RNA–Protein interactions for RNA: ENST00000323144.11

TPM3-204, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,088 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-204ENST00000323144 NISCHQ9Y2I1 1504 aa31.22■■■□□ 2.59
TPM3-204ENST00000323144 CCDC180Q9P1Z9 1646 aa28.13■■■□□ 2.09
TPM3-204ENST00000323144 ABCC9O60706 1549 aa27.84■■■□□ 2.05
TPM3-204ENST00000323144 RB1CC1Q8TDY2 1594 aa26.58■■□□□ 1.85
TPM3-204ENST00000323144 NACADO15069 1562 aa26.4■■□□□ 1.82
TPM3-204ENST00000323144 UNC13AQ9UPW8 1703 aa26.22■■□□□ 1.79
TPM3-204ENST00000323144 MYO15BQ96JP2 1530 aa26.04■■□□□ 1.76
TPM3-204ENST00000323144 DCAF8L2P0C7V8 631 aa26■■□□□ 1.75
TPM3-204ENST00000323144 ZCCHC6Q5VYS8 1495 aaKnown RBP25.98■■□□□ 1.75
TPM3-204ENST00000323144 BICRAQ9NZM4 1560 aa25.89■■□□□ 1.73
TPM3-204ENST00000323144 DNAJC5BQ9UF47 199 aa25.85■■□□□ 1.73
TPM3-204ENST00000323144 DCAF1Q9Y4B6 1507 aa25.79■■□□□ 1.72
TPM3-204ENST00000323144 PABPN1Q86U42 306 aaKnown RBP eCLIP25.79■■□□□ 1.72
TPM3-204ENST00000323144 SCRIBQ14160 1630 aa25.63■■□□□ 1.69
TPM3-204ENST00000323144 SHROOM4Q9ULL8 1493 aa25.45■■□□□ 1.66
TPM3-204ENST00000323144 CC2D2AQ9P2K1 1620 aa25.23■■□□□ 1.63
TPM3-204ENST00000323144 EIF4G1Q04637 1599 aaKnown RBP25.2■■□□□ 1.62
TPM3-204ENST00000323144 CECR2Q9BXF3 1484 aa25.02■■□□□ 1.6
TPM3-204ENST00000323144 SMARCA4P51532 1647 aa24.44■■□□□ 1.5
TPM3-204ENST00000323144 ATAD2BQ9ULI0 1458 aa24.29■■□□□ 1.48
TPM3-204ENST00000323144 NCAPD3P42695 1498 aa24.28■■□□□ 1.48
TPM3-204ENST00000323144 HMGXB3Q12766 1538 aa24.27■■□□□ 1.48
TPM3-204ENST00000323144 SMARCA2P51531 1590 aa24.26■■□□□ 1.47
TPM3-204ENST00000323144 BAZ1AQ9NRL2 1556 aaPredicted RBP24.25■■□□□ 1.47
TPM3-204ENST00000323144 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
TPM3-204ENST00000323144 MROH2BQ7Z745 1585 aa24.1■■□□□ 1.45
TPM3-204ENST00000323144 BAZ1BQ9UIG0 1483 aaKnown RBP24.09■■□□□ 1.45
TPM3-204ENST00000323144 NESP48681 1621 aa23.99■■□□□ 1.43
TPM3-204ENST00000323144 ERCC6Q03468 1493 aa23.99■■□□□ 1.43
TPM3-204ENST00000323144 CUX2O14529 1486 aa23.91■■□□□ 1.42
TPM3-204ENST00000323144 WIZO95785 1651 aa23.89■■□□□ 1.42
TPM3-204ENST00000323144 THOC2Q8NI27 1593 aaKnown RBP23.86■■□□□ 1.41
TPM3-204ENST00000323144 KIF21AQ7Z4S6 1674 aa23.85■■□□□ 1.41
TPM3-204ENST00000323144 LAMC3Q9Y6N6 1575 aa23.83■■□□□ 1.41
TPM3-204ENST00000323144 TOP2AP11388 1531 aaKnown RBP23.57■■□□□ 1.36
TPM3-204ENST00000323144 RSF1Q96T23 1441 aaPredicted RBP23.55■■□□□ 1.36
TPM3-204ENST00000323144 DNAJC5Q9H3Z4 198 aa23.54■■□□□ 1.36
TPM3-204ENST00000323144 PDS5BQ9NTI5 1447 aa23.53■■□□□ 1.36
TPM3-204ENST00000323144 CADPSQ9ULU8 1353 aa23.51■■□□□ 1.35
TPM3-204ENST00000323144 WDR62O43379 1518 aa23.47■■□□□ 1.35
TPM3-204ENST00000323144 MRC2Q9UBG0 1479 aa23.46■■□□□ 1.35
TPM3-204ENST00000323144 PRDM2Q13029 1718 aa23.43■■□□□ 1.34
TPM3-204ENST00000323144 CEP164Q9UPV0 1460 aa23.4■■□□□ 1.34
TPM3-204ENST00000323144 CFTRP13569 1480 aa23.36■■□□□ 1.33
TPM3-204ENST00000323144 FANCD2Q9BXW9 1451 aa23.36■■□□□ 1.33
TPM3-204ENST00000323144 URB2Q14146 1524 aaKnown RBP23.22■■□□□ 1.31
TPM3-204ENST00000323144 CCDC88BA6NC98 1476 aa23.18■■□□□ 1.3
TPM3-204ENST00000323144 TOPBP1Q92547 1522 aa22.97■■□□□ 1.27
TPM3-204ENST00000323144 DNMBPQ6XZF7 1577 aa22.94■■□□□ 1.26
TPM3-204ENST00000323144 EIF4G3O43432 1585 aaKnown RBP22.91■■□□□ 1.26
TPM3-204ENST00000323144 ZNF608Q9ULD9 1512 aaPredicted RBP22.89■■□□□ 1.26
TPM3-204ENST00000323144 IFT140Q96RY7 1462 aa22.86■■□□□ 1.25
TPM3-204ENST00000323144 TARBP1Q13395 1621 aaKnown RBP22.83■■□□□ 1.25
TPM3-204ENST00000323144 ABCC8Q09428 1581 aa22.78■■□□□ 1.24
TPM3-204ENST00000323144 CHD1O14646 1710 aa22.75■■□□□ 1.23
TPM3-204ENST00000323144 POLA1P09884 1462 aaPredicted RBP22.74■■□□□ 1.23
TPM3-204ENST00000323144 WDR97A6NE52 1622 aa22.67■■□□□ 1.22
TPM3-204ENST00000323144 CUX1P39880 1505 aa22.67■■□□□ 1.22
TPM3-204ENST00000323144 RIMBP3CA6NJZ7 1639 aa22.66■■□□□ 1.22
TPM3-204ENST00000323144 RIMBP3BA6NNM3 1639 aa22.66■■□□□ 1.22
TPM3-204ENST00000323144 RIMBP3Q9UFD9 1639 aa22.66■■□□□ 1.22
TPM3-204ENST00000323144 FGD5Q6ZNL6 1462 aa22.63■■□□□ 1.21
TPM3-204ENST00000323144 TRIM41Q8WV44 630 aa22.63■■□□□ 1.21
TPM3-204ENST00000323144 RAD54L2Q9Y4B4 1467 aa22.62■■□□□ 1.21
TPM3-204ENST00000323144 AQRO60306 1485 aaKnown RBP eCLIP22.6■■□□□ 1.214e-7■■□□□ 12.7
TPM3-204ENST00000323144 OSCARQ8IYS5 282 aa22.59■■□□□ 1.21
TPM3-204ENST00000323144 ARHGEF11O15085 1522 aa22.54■■□□□ 1.2
TPM3-204ENST00000323144 PBRM1Q86U86 1689 aa22.54■■□□□ 1.2
TPM3-204ENST00000323144 SOGA1O94964 1423 aa22.49■■□□□ 1.19
TPM3-204ENST00000323144 SNAPC4Q5SXM2 1469 aa22.49■■□□□ 1.19
TPM3-204ENST00000323144 SUPT5HO00267 1087 aaKnown RBP22.47■■□□□ 1.19
TPM3-204ENST00000323144 TDRD9Q8NDG6 1382 aaKnown RBP22.45■■□□□ 1.18
TPM3-204ENST00000323144 ABCA5Q8WWZ7 1642 aa22.45■■□□□ 1.18
TPM3-204ENST00000323144 BIVM-ERCC5R4GMW8 1640 aa22.42■■□□□ 1.18
TPM3-204ENST00000323144 CLASP1Q7Z460 1538 aa22.4■■□□□ 1.18
TPM3-204ENST00000323144 MAGI1Q96QZ7 1491 aaPredicted RBP22.38■■□□□ 1.17
TPM3-204ENST00000323144 SYNJ1O43426 1573 aa22.38■■□□□ 1.17
TPM3-204ENST00000323144 GRIN2BQ13224 1484 aa22.36■■□□□ 1.17
TPM3-204ENST00000323144 ARAP1Q96P48 1450 aa22.34■■□□□ 1.17
TPM3-204ENST00000323144 ABCA10Q8WWZ4 1543 aa22.34■■□□□ 1.17
TPM3-204ENST00000323144 TOP2BQ02880 1626 aa22.34■■□□□ 1.17
TPM3-204ENST00000323144 GAPVD1Q14C86 1478 aa22.3■■□□□ 1.16
TPM3-204ENST00000323144 SYNJ2O15056 1496 aa22.29■■□□□ 1.16
TPM3-204ENST00000323144 FBLN2P98095 1184 aa22.29■■□□□ 1.16
TPM3-204ENST00000323144 ADAMTS12P58397 1594 aa22.27■■□□□ 1.16
TPM3-204ENST00000323144 WRNQ14191 1432 aaPredicted RBP eCLIP22.22■■□□□ 1.159e-7■■■□□ 18.8
TPM3-204ENST00000323144 CEP170Q5SW79 1584 aa22.14■■□□□ 1.13
TPM3-204ENST00000323144 GRIN2AQ12879 1464 aa22.13■■□□□ 1.13
TPM3-204ENST00000323144 CHMP7Q8WUX9 453 aaPredicted RBP22.12■■□□□ 1.13
TPM3-204ENST00000323144 CYB5RLQ6IPT4 315 aa22.1■■□□□ 1.13
TPM3-204ENST00000323144 ERCC6L2Q5T890 1561 aa22.08■■□□□ 1.12
TPM3-204ENST00000323144 ERICH3Q5RHP9 1530 aa22.07■■□□□ 1.12
TPM3-204ENST00000323144 SHROOM2Q13796 1616 aa22.04■■□□□ 1.12
TPM3-204ENST00000323144 NUP160Q12769 1436 aa22.03■■□□□ 1.12
TPM3-204ENST00000323144 FHAD1B1AJZ9 1412 aa21.99■■□□□ 1.11
TPM3-204ENST00000323144 RUSC2Q8N2Y8 1516 aa21.98■■□□□ 1.11
TPM3-204ENST00000323144 CUL7Q14999 1698 aa21.88■■□□□ 1.09
TPM3-204ENST00000323144 TRHP20396 242 aaPredicted RBP21.81■■□□□ 1.08
TPM3-204ENST00000323144 KIF27Q86VH2 1401 aa21.74■■□□□ 1.07
TPM3-204ENST00000323144 PRG4Q92954 1404 aaPredicted RBP21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms