RNA–Protein interactions for RNA: ENST00000444131.2

TMED4-202, Transcript of transmembrane p24 trafficking protein 4, humanhuman

TSL 4

Gene TMED4, Length 545 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMED4-202ENST00000444131 NISCHQ9Y2I1 1504 aa46.67■■■■■ 5.06
TMED4-202ENST00000444131 CCDC180Q9P1Z9 1646 aa41.93■■■■■ 4.3
TMED4-202ENST00000444131 ABCC9O60706 1549 aa41.72■■■■■ 4.27
TMED4-202ENST00000444131 RB1CC1Q8TDY2 1594 aa39.86■■■■□ 3.97
TMED4-202ENST00000444131 NACADO15069 1562 aa39.62■■■■□ 3.93
TMED4-202ENST00000444131 DCAF8L2P0C7V8 631 aa39.28■■■■□ 3.88
TMED4-202ENST00000444131 MYO15BQ96JP2 1530 aa39.15■■■■□ 3.86
TMED4-202ENST00000444131 DNAJC5BQ9UF47 199 aa39.01■■■■□ 3.84
TMED4-202ENST00000444131 UNC13AQ9UPW8 1703 aa38.89■■■■□ 3.82
TMED4-202ENST00000444131 PABPN1Q86U42 306 aaKnown RBP eCLIP38.81■■■■□ 3.8
TMED4-202ENST00000444131 ZCCHC6Q5VYS8 1495 aaKnown RBP38.69■■■■□ 3.78
TMED4-202ENST00000444131 DCAF1Q9Y4B6 1507 aa38.63■■■■□ 3.78
TMED4-202ENST00000444131 BICRAQ9NZM4 1560 aa38.61■■■■□ 3.77
TMED4-202ENST00000444131 SHROOM4Q9ULL8 1493 aa38.28■■■■□ 3.72
TMED4-202ENST00000444131 SCRIBQ14160 1630 aa38.08■■■■□ 3.69
TMED4-202ENST00000444131 CC2D2AQ9P2K1 1620 aa37.74■■■■□ 3.63
TMED4-202ENST00000444131 EIF4G1Q04637 1599 aaKnown RBP37.69■■■■□ 3.62
TMED4-202ENST00000444131 CECR2Q9BXF3 1484 aa37.64■■■■□ 3.62
TMED4-202ENST00000444131 NCAPD3P42695 1498 aa36.55■■■■□ 3.44
TMED4-202ENST00000444131 ATAD2BQ9ULI0 1458 aa36.4■■■■□ 3.42
TMED4-202ENST00000444131 SMARCA4P51532 1647 aa36.39■■■■□ 3.42
TMED4-202ENST00000444131 SMARCA2P51531 1590 aa36.37■■■■□ 3.41
TMED4-202ENST00000444131 HMGXB3Q12766 1538 aa36.3■■■■□ 3.4
TMED4-202ENST00000444131 BAZ1AQ9NRL2 1556 aaPredicted RBP36.27■■■■□ 3.4
TMED4-202ENST00000444131 PEG3Q9GZU2 1588 aa36.1■■■■□ 3.37
TMED4-202ENST00000444131 ERCC6Q03468 1493 aa36.09■■■■□ 3.37
TMED4-202ENST00000444131 BAZ1BQ9UIG0 1483 aaKnown RBP36.07■■■■□ 3.37
TMED4-202ENST00000444131 CUX2O14529 1486 aa36.05■■■■□ 3.36
TMED4-202ENST00000444131 MROH2BQ7Z745 1585 aa35.9■■■■□ 3.34
TMED4-202ENST00000444131 DNAJC5Q9H3Z4 198 aa35.9■■■■□ 3.34
TMED4-202ENST00000444131 NESP48681 1621 aa35.83■■■■□ 3.33
TMED4-202ENST00000444131 LAMC3Q9Y6N6 1575 aa35.73■■■■□ 3.31
TMED4-202ENST00000444131 THOC2Q8NI27 1593 aaKnown RBP35.54■■■■□ 3.28
TMED4-202ENST00000444131 PDS5BQ9NTI5 1447 aa35.53■■■■□ 3.28
TMED4-202ENST00000444131 WIZO95785 1651 aa35.47■■■■□ 3.27
TMED4-202ENST00000444131 KIF21AQ7Z4S6 1674 aa35.43■■■■□ 3.26
TMED4-202ENST00000444131 CADPSQ9ULU8 1353 aa35.42■■■■□ 3.26
TMED4-202ENST00000444131 RSF1Q96T23 1441 aaPredicted RBP35.2■■■■□ 3.23
TMED4-202ENST00000444131 MRC2Q9UBG0 1479 aa35.18■■■■□ 3.22
TMED4-202ENST00000444131 TOP2AP11388 1531 aaKnown RBP35.1■■■■□ 3.21
TMED4-202ENST00000444131 WDR62O43379 1518 aa35.09■■■■□ 3.21
TMED4-202ENST00000444131 CEP164Q9UPV0 1460 aa35.06■■■■□ 3.2
TMED4-202ENST00000444131 CFTRP13569 1480 aa35.03■■■■□ 3.2
TMED4-202ENST00000444131 FANCD2Q9BXW9 1451 aa35■■■■□ 3.19
TMED4-202ENST00000444131 PRDM2Q13029 1718 aa34.75■■■■□ 3.15
TMED4-202ENST00000444131 URB2Q14146 1524 aaKnown RBP34.67■■■■□ 3.14
TMED4-202ENST00000444131 CCDC88BA6NC98 1476 aa34.66■■■■□ 3.14
TMED4-202ENST00000444131 ABCC8Q09428 1581 aa34.38■■■■□ 3.09
TMED4-202ENST00000444131 OSCARQ8IYS5 282 aa34.38■■■■□ 3.09
TMED4-202ENST00000444131 IFT140Q96RY7 1462 aa34.37■■■■□ 3.09
TMED4-202ENST00000444131 TOPBP1Q92547 1522 aa34.35■■■■□ 3.09
TMED4-202ENST00000444131 TRIM41Q8WV44 630 aa34.27■■■■□ 3.08
TMED4-202ENST00000444131 DNMBPQ6XZF7 1577 aa34.25■■■■□ 3.07
TMED4-202ENST00000444131 ZNF608Q9ULD9 1512 aaPredicted RBP34.2■■■■□ 3.07
TMED4-202ENST00000444131 EIF4G3O43432 1585 aaKnown RBP34.08■■■■□ 3.05
TMED4-202ENST00000444131 TARBP1Q13395 1621 aaKnown RBP34.04■■■■□ 3.04
TMED4-202ENST00000444131 POLA1P09884 1462 aaPredicted RBP33.99■■■■□ 3.03
TMED4-202ENST00000444131 AQRO60306 1485 aaKnown RBP eCLIP33.92■■■■□ 3.023e-7■■■■□ 25.4
TMED4-202ENST00000444131 RIMBP3CA6NJZ7 1639 aa33.89■■■■□ 3.02
TMED4-202ENST00000444131 RIMBP3BA6NNM3 1639 aa33.89■■■■□ 3.02
TMED4-202ENST00000444131 RIMBP3Q9UFD9 1639 aa33.89■■■■□ 3.02
TMED4-202ENST00000444131 SOGA1O94964 1423 aa33.85■■■■□ 3.01
TMED4-202ENST00000444131 WDR97A6NE52 1622 aa33.82■■■■□ 3
TMED4-202ENST00000444131 CHD1O14646 1710 aa33.81■■■■□ 3
TMED4-202ENST00000444131 RAD54L2Q9Y4B4 1467 aa33.81■■■■□ 3
TMED4-202ENST00000444131 ARHGEF11O15085 1522 aa33.79■■■■□ 3
TMED4-202ENST00000444131 FGD5Q6ZNL6 1462 aa33.78■■■■□ 3
TMED4-202ENST00000444131 CUX1P39880 1505 aa33.74■■■□□ 2.99
TMED4-202ENST00000444131 TDRD9Q8NDG6 1382 aaKnown RBP33.72■■■□□ 2.99
TMED4-202ENST00000444131 FBLN2P98095 1184 aa33.7■■■□□ 2.99
TMED4-202ENST00000444131 SUPT5HO00267 1087 aaKnown RBP33.63■■■□□ 2.97
TMED4-202ENST00000444131 SNAPC4Q5SXM2 1469 aa33.59■■■□□ 2.97
TMED4-202ENST00000444131 MAGI1Q96QZ7 1491 aaPredicted RBP33.59■■■□□ 2.97
TMED4-202ENST00000444131 GRIN2BQ13224 1484 aa33.57■■■□□ 2.97
TMED4-202ENST00000444131 CYB5RLQ6IPT4 315 aa33.51■■■□□ 2.95
TMED4-202ENST00000444131 CHMP7Q8WUX9 453 aaPredicted RBP33.51■■■□□ 2.95
TMED4-202ENST00000444131 SYNJ1O43426 1573 aa33.47■■■□□ 2.95
TMED4-202ENST00000444131 SYNJ2O15056 1496 aa33.46■■■□□ 2.95
TMED4-202ENST00000444131 GAPVD1Q14C86 1478 aa33.44■■■□□ 2.94
TMED4-202ENST00000444131 ARAP1Q96P48 1450 aa33.44■■■□□ 2.94
TMED4-202ENST00000444131 ABCA10Q8WWZ4 1543 aa33.44■■■□□ 2.94
TMED4-202ENST00000444131 CLASP1Q7Z460 1538 aa33.43■■■□□ 2.94
TMED4-202ENST00000444131 PBRM1Q86U86 1689 aa33.42■■■□□ 2.94
TMED4-202ENST00000444131 ABCA5Q8WWZ7 1642 aa33.37■■■□□ 2.93
TMED4-202ENST00000444131 WRNQ14191 1432 aaPredicted RBP eCLIP33.34■■■□□ 2.93
TMED4-202ENST00000444131 TOP2BQ02880 1626 aa33.28■■■□□ 2.92
TMED4-202ENST00000444131 BIVM-ERCC5R4GMW8 1640 aa33.28■■■□□ 2.92
TMED4-202ENST00000444131 TRHP20396 242 aaPredicted RBP33.13■■■□□ 2.89
TMED4-202ENST00000444131 GRIN2AQ12879 1464 aa33.12■■■□□ 2.89
TMED4-202ENST00000444131 ADAMTS12P58397 1594 aa33.1■■■□□ 2.89
TMED4-202ENST00000444131 ERICH3Q5RHP9 1530 aa33.05■■■□□ 2.88
TMED4-202ENST00000444131 FHAD1B1AJZ9 1412 aa33.04■■■□□ 2.88
TMED4-202ENST00000444131 NUP160Q12769 1436 aa33.02■■■□□ 2.88
TMED4-202ENST00000444131 CEP170Q5SW79 1584 aa32.96■■■□□ 2.87
TMED4-202ENST00000444131 SHROOM2Q13796 1616 aa32.88■■■□□ 2.85
TMED4-202ENST00000444131 ERCC6L2Q5T890 1561 aa32.83■■■□□ 2.85
TMED4-202ENST00000444131 PRG4Q92954 1404 aaPredicted RBP32.68■■■□□ 2.82
TMED4-202ENST00000444131 JPH4Q96JJ6 628 aa32.66■■■□□ 2.82
TMED4-202ENST00000444131 KIF27Q86VH2 1401 aa32.64■■■□□ 2.82
TMED4-202ENST00000444131 RUSC2Q8N2Y8 1516 aa32.64■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms