RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 NISCHQ9Y2I1 1504 aa31.94■■■□□ 2.7
TPM3-216ENST00000473036 ABCC9O60706 1549 aa28.41■■■□□ 2.14
TPM3-216ENST00000473036 CCDC180Q9P1Z9 1646 aa28.31■■■□□ 2.12
TPM3-216ENST00000473036 RB1CC1Q8TDY2 1594 aa27.05■■□□□ 1.92
TPM3-216ENST00000473036 DNAJC5BQ9UF47 199 aa26.89■■□□□ 1.9
TPM3-216ENST00000473036 NACADO15069 1562 aa26.83■■□□□ 1.89
TPM3-216ENST00000473036 ZCCHC6Q5VYS8 1495 aaKnown RBP26.63■■□□□ 1.85
TPM3-216ENST00000473036 DCAF8L2P0C7V8 631 aa26.58■■□□□ 1.85
TPM3-216ENST00000473036 MYO15BQ96JP2 1530 aa26.45■■□□□ 1.83
TPM3-216ENST00000473036 DCAF1Q9Y4B6 1507 aa26.39■■□□□ 1.81
TPM3-216ENST00000473036 PABPN1Q86U42 306 aaKnown RBP eCLIP26.35■■□□□ 1.81
TPM3-216ENST00000473036 UNC13AQ9UPW8 1703 aa26.29■■□□□ 1.8
TPM3-216ENST00000473036 BICRAQ9NZM4 1560 aa26.19■■□□□ 1.78
TPM3-216ENST00000473036 SHROOM4Q9ULL8 1493 aa26.05■■□□□ 1.76
TPM3-216ENST00000473036 SCRIBQ14160 1630 aa25.89■■□□□ 1.74
TPM3-216ENST00000473036 CECR2Q9BXF3 1484 aa25.71■■□□□ 1.71
TPM3-216ENST00000473036 CC2D2AQ9P2K1 1620 aa25.7■■□□□ 1.71
TPM3-216ENST00000473036 EIF4G1Q04637 1599 aaKnown RBP25.61■■□□□ 1.69
TPM3-216ENST00000473036 DNAJC5Q9H3Z4 198 aa25.09■■□□□ 1.61
TPM3-216ENST00000473036 CUX2O14529 1486 aa24.8■■□□□ 1.56
TPM3-216ENST00000473036 SMARCA4P51532 1647 aa24.76■■□□□ 1.55
TPM3-216ENST00000473036 NCAPD3P42695 1498 aa24.76■■□□□ 1.55
TPM3-216ENST00000473036 BAZ1AQ9NRL2 1556 aaPredicted RBP24.68■■□□□ 1.54
TPM3-216ENST00000473036 MROH2BQ7Z745 1585 aa24.67■■□□□ 1.54
TPM3-216ENST00000473036 ERCC6Q03468 1493 aa24.63■■□□□ 1.53
TPM3-216ENST00000473036 ATAD2BQ9ULI0 1458 aa24.61■■□□□ 1.53
TPM3-216ENST00000473036 SMARCA2P51531 1590 aa24.55■■□□□ 1.52
TPM3-216ENST00000473036 HMGXB3Q12766 1538 aa24.55■■□□□ 1.52
TPM3-216ENST00000473036 PEG3Q9GZU2 1588 aa24.52■■□□□ 1.52
TPM3-216ENST00000473036 WIZO95785 1651 aa24.4■■□□□ 1.5
TPM3-216ENST00000473036 RSF1Q96T23 1441 aaPredicted RBP24.39■■□□□ 1.5
TPM3-216ENST00000473036 BAZ1BQ9UIG0 1483 aaKnown RBP24.36■■□□□ 1.49
TPM3-216ENST00000473036 NESP48681 1621 aa24.28■■□□□ 1.48
TPM3-216ENST00000473036 LAMC3Q9Y6N6 1575 aa24.25■■□□□ 1.47
TPM3-216ENST00000473036 THOC2Q8NI27 1593 aaKnown RBP24.2■■□□□ 1.46
TPM3-216ENST00000473036 PDS5BQ9NTI5 1447 aa24.13■■□□□ 1.45
TPM3-216ENST00000473036 TOP2AP11388 1531 aaKnown RBP24.08■■□□□ 1.45
TPM3-216ENST00000473036 KIF21AQ7Z4S6 1674 aa23.99■■□□□ 1.43
TPM3-216ENST00000473036 CADPSQ9ULU8 1353 aa23.96■■□□□ 1.43
TPM3-216ENST00000473036 MRC2Q9UBG0 1479 aa23.88■■□□□ 1.41
TPM3-216ENST00000473036 WDR62O43379 1518 aa23.85■■□□□ 1.41
TPM3-216ENST00000473036 CCDC88BA6NC98 1476 aa23.85■■□□□ 1.41
TPM3-216ENST00000473036 SUPT5HO00267 1087 aaKnown RBP23.78■■□□□ 1.4
TPM3-216ENST00000473036 CFTRP13569 1480 aa23.74■■□□□ 1.39
TPM3-216ENST00000473036 CEP164Q9UPV0 1460 aa23.73■■□□□ 1.39
TPM3-216ENST00000473036 TRIM41Q8WV44 630 aa23.69■■□□□ 1.38
TPM3-216ENST00000473036 FANCD2Q9BXW9 1451 aa23.65■■□□□ 1.38
TPM3-216ENST00000473036 OSCARQ8IYS5 282 aa23.56■■□□□ 1.36
TPM3-216ENST00000473036 PRDM2Q13029 1718 aa23.56■■□□□ 1.36
TPM3-216ENST00000473036 URB2Q14146 1524 aaKnown RBP23.43■■□□□ 1.34
TPM3-216ENST00000473036 IFT140Q96RY7 1462 aa23.3■■□□□ 1.32
TPM3-216ENST00000473036 TOPBP1Q92547 1522 aa23.23■■□□□ 1.31
TPM3-216ENST00000473036 ABCC8Q09428 1581 aa23.23■■□□□ 1.31
TPM3-216ENST00000473036 RIMBP3CA6NJZ7 1639 aa23.21■■□□□ 1.31
TPM3-216ENST00000473036 RIMBP3BA6NNM3 1639 aa23.21■■□□□ 1.31
TPM3-216ENST00000473036 RIMBP3Q9UFD9 1639 aa23.21■■□□□ 1.31
TPM3-216ENST00000473036 DNMBPQ6XZF7 1577 aa23.18■■□□□ 1.3
TPM3-216ENST00000473036 ZNF608Q9ULD9 1512 aaPredicted RBP23.17■■□□□ 1.3
TPM3-216ENST00000473036 ARHGEF11O15085 1522 aa23.13■■□□□ 1.29
TPM3-216ENST00000473036 CUX1P39880 1505 aa23.13■■□□□ 1.29
TPM3-216ENST00000473036 EIF4G3O43432 1585 aaKnown RBP23.06■■□□□ 1.28
TPM3-216ENST00000473036 POLA1P09884 1462 aaPredicted RBP23.05■■□□□ 1.28
TPM3-216ENST00000473036 TARBP1Q13395 1621 aaKnown RBP23■■□□□ 1.27
TPM3-216ENST00000473036 FGD5Q6ZNL6 1462 aa22.98■■□□□ 1.27
TPM3-216ENST00000473036 RAD54L2Q9Y4B4 1467 aa22.98■■□□□ 1.27
TPM3-216ENST00000473036 SYNJ1O43426 1573 aa22.96■■□□□ 1.27
TPM3-216ENST00000473036 CYB5RLQ6IPT4 315 aa22.93■■□□□ 1.26
TPM3-216ENST00000473036 WRNQ14191 1432 aaPredicted RBP eCLIP22.92■■□□□ 1.269e-7■■■□□ 18.8
TPM3-216ENST00000473036 AQRO60306 1485 aaKnown RBP eCLIP22.92■■□□□ 1.262e-7■■■□□ 16.3
TPM3-216ENST00000473036 SOGA1O94964 1423 aa22.91■■□□□ 1.26
TPM3-216ENST00000473036 TOP2BQ02880 1626 aa22.9■■□□□ 1.26
TPM3-216ENST00000473036 BIVM-ERCC5R4GMW8 1640 aa22.9■■□□□ 1.26
TPM3-216ENST00000473036 CHD1O14646 1710 aa22.9■■□□□ 1.26
TPM3-216ENST00000473036 WDR97A6NE52 1622 aa22.88■■□□□ 1.25
TPM3-216ENST00000473036 ARAP1Q96P48 1450 aa22.86■■□□□ 1.25
TPM3-216ENST00000473036 TDRD9Q8NDG6 1382 aaKnown RBP22.81■■□□□ 1.24
TPM3-216ENST00000473036 FBLN2P98095 1184 aa22.81■■□□□ 1.24
TPM3-216ENST00000473036 TRHP20396 242 aaPredicted RBP22.77■■□□□ 1.24
TPM3-216ENST00000473036 ABCA10Q8WWZ4 1543 aa22.76■■□□□ 1.23
TPM3-216ENST00000473036 MAGI1Q96QZ7 1491 aaPredicted RBP22.74■■□□□ 1.23
TPM3-216ENST00000473036 CLASP1Q7Z460 1538 aa22.72■■□□□ 1.23
TPM3-216ENST00000473036 SNAPC4Q5SXM2 1469 aa22.71■■□□□ 1.23
TPM3-216ENST00000473036 ABCA5Q8WWZ7 1642 aa22.69■■□□□ 1.22
TPM3-216ENST00000473036 CHMP7Q8WUX9 453 aaPredicted RBP22.68■■□□□ 1.22
TPM3-216ENST00000473036 GRIN2BQ13224 1484 aa22.67■■□□□ 1.22
TPM3-216ENST00000473036 SYNJ2O15056 1496 aa22.65■■□□□ 1.22
TPM3-216ENST00000473036 GAPVD1Q14C86 1478 aa22.65■■□□□ 1.22
TPM3-216ENST00000473036 PBRM1Q86U86 1689 aa22.62■■□□□ 1.21
TPM3-216ENST00000473036 ERICH3Q5RHP9 1530 aa22.46■■□□□ 1.19
TPM3-216ENST00000473036 ADAMTS12P58397 1594 aa22.45■■□□□ 1.18
TPM3-216ENST00000473036 RUSC2Q8N2Y8 1516 aa22.41■■□□□ 1.18
TPM3-216ENST00000473036 KIF27Q86VH2 1401 aa22.4■■□□□ 1.18
TPM3-216ENST00000473036 IGF1RP08069 1367 aa22.4■■□□□ 1.18
TPM3-216ENST00000473036 AEBP2Q6ZN18 517 aaPredicted RBP22.4■■□□□ 1.18
TPM3-216ENST00000473036 FHAD1B1AJZ9 1412 aa22.37■■□□□ 1.17
TPM3-216ENST00000473036 GRIN2AQ12879 1464 aa22.35■■□□□ 1.17
TPM3-216ENST00000473036 NUP160Q12769 1436 aa22.32■■□□□ 1.16
TPM3-216ENST00000473036 CHIC1Q5VXU3 224 aa22.3■■□□□ 1.16
TPM3-216ENST00000473036 CEP170Q5SW79 1584 aa22.29■■□□□ 1.16
TPM3-216ENST00000473036 CUL7Q14999 1698 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms