RNA–Protein interactions for RNA: ENST00000599839.5

CALM3-212, Transcript of calmodulin 3, humanhuman

TSL 1 (best) BASIC

Gene CALM3, Length 1,355 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALM3-212ENST00000599839 NISCHQ9Y2I1 1504 aa38.15■■■■□ 3.7
CALM3-212ENST00000599839 CCDC180Q9P1Z9 1646 aa33.88■■■■□ 3.01
CALM3-212ENST00000599839 ABCC9O60706 1549 aa32.93■■■□□ 2.86
CALM3-212ENST00000599839 ZCCHC6Q5VYS8 1495 aaKnown RBP31.86■■■□□ 2.69
CALM3-212ENST00000599839 NACADO15069 1562 aa31.72■■■□□ 2.67
CALM3-212ENST00000599839 RB1CC1Q8TDY2 1594 aa31.72■■■□□ 2.67
CALM3-212ENST00000599839 DCAF8L2P0C7V8 631 aa31.67■■■□□ 2.66
CALM3-212ENST00000599839 MYO15BQ96JP2 1530 aa31.57■■■□□ 2.64
CALM3-212ENST00000599839 DCAF1Q9Y4B6 1507 aa31.54■■■□□ 2.64
CALM3-212ENST00000599839 UNC13AQ9UPW8 1703 aa31.22■■■□□ 2.59
CALM3-212ENST00000599839 SCRIBQ14160 1630 aa30.96■■■□□ 2.55
CALM3-212ENST00000599839 BICRAQ9NZM4 1560 aa30.86■■■□□ 2.53
CALM3-212ENST00000599839 PABPN1Q86U42 306 aaKnown RBP eCLIP30.75■■■□□ 2.51
CALM3-212ENST00000599839 SHROOM4Q9ULL8 1493 aa30.39■■■□□ 2.46
CALM3-212ENST00000599839 DNAJC5BQ9UF47 199 aa30.02■■■□□ 2.4
CALM3-212ENST00000599839 EIF4G1Q04637 1599 aaKnown RBP29.98■■■□□ 2.39
CALM3-212ENST00000599839 CC2D2AQ9P2K1 1620 aa29.83■■■□□ 2.37
CALM3-212ENST00000599839 CECR2Q9BXF3 1484 aa29.75■■■□□ 2.35
CALM3-212ENST00000599839 SMARCA4P51532 1647 aa29.61■■■□□ 2.33
CALM3-212ENST00000599839 BAZ1AQ9NRL2 1556 aaPredicted RBP29.54■■■□□ 2.32
CALM3-212ENST00000599839 MROH2BQ7Z745 1585 aa29.46■■■□□ 2.31
CALM3-212ENST00000599839 ATAD2BQ9ULI0 1458 aa29.34■■■□□ 2.29
CALM3-212ENST00000599839 SMARCA2P51531 1590 aa29.29■■■□□ 2.28
CALM3-212ENST00000599839 PEG3Q9GZU2 1588 aa29.29■■■□□ 2.28
CALM3-212ENST00000599839 NCAPD3P42695 1498 aa29.25■■■□□ 2.27
CALM3-212ENST00000599839 WIZO95785 1651 aa29.2■■■□□ 2.27
CALM3-212ENST00000599839 HMGXB3Q12766 1538 aa29.17■■■□□ 2.26
CALM3-212ENST00000599839 RSF1Q96T23 1441 aaPredicted RBP29.13■■■□□ 2.25
CALM3-212ENST00000599839 BAZ1BQ9UIG0 1483 aaKnown RBP29.1■■■□□ 2.25
CALM3-212ENST00000599839 TOP2AP11388 1531 aaKnown RBP28.83■■■□□ 2.21
CALM3-212ENST00000599839 NESP48681 1621 aa28.59■■■□□ 2.17
CALM3-212ENST00000599839 SUPT5HO00267 1087 aaKnown RBP28.5■■■□□ 2.15
CALM3-212ENST00000599839 LAMC3Q9Y6N6 1575 aa28.49■■■□□ 2.15
CALM3-212ENST00000599839 CCDC88BA6NC98 1476 aa28.46■■■□□ 2.15
CALM3-212ENST00000599839 CADPSQ9ULU8 1353 aa28.38■■■□□ 2.13
CALM3-212ENST00000599839 KIF21AQ7Z4S6 1674 aa28.33■■■□□ 2.13
CALM3-212ENST00000599839 CFTRP13569 1480 aa28.31■■■□□ 2.12
CALM3-212ENST00000599839 ERCC6Q03468 1493 aa28.29■■■□□ 2.12
CALM3-212ENST00000599839 PRDM2Q13029 1718 aa28.26■■■□□ 2.12
CALM3-212ENST00000599839 PDS5BQ9NTI5 1447 aa28.19■■■□□ 2.1
CALM3-212ENST00000599839 THOC2Q8NI27 1593 aaKnown RBP28.16■■■□□ 2.1
CALM3-212ENST00000599839 FANCD2Q9BXW9 1451 aa28.12■■■□□ 2.09
CALM3-212ENST00000599839 CEP164Q9UPV0 1460 aa28.05■■■□□ 2.08
CALM3-212ENST00000599839 MRC2Q9UBG0 1479 aa27.97■■■□□ 2.07
CALM3-212ENST00000599839 WDR62O43379 1518 aa27.93■■■□□ 2.06
CALM3-212ENST00000599839 CUX2O14529 1486 aa27.92■■■□□ 2.06
CALM3-212ENST00000599839 URB2Q14146 1524 aaKnown RBP27.88■■■□□ 2.05
CALM3-212ENST00000599839 TOPBP1Q92547 1522 aa27.72■■■□□ 2.03
CALM3-212ENST00000599839 DNMBPQ6XZF7 1577 aa27.71■■■□□ 2.03
CALM3-212ENST00000599839 CUX1P39880 1505 aa27.62■■■□□ 2.01
CALM3-212ENST00000599839 ABCC8Q09428 1581 aa27.61■■■□□ 2.01
CALM3-212ENST00000599839 POLA1P09884 1462 aaPredicted RBP27.5■■□□□ 1.99
CALM3-212ENST00000599839 SYNJ1O43426 1573 aa27.48■■□□□ 1.99
CALM3-212ENST00000599839 FGD5Q6ZNL6 1462 aa27.47■■□□□ 1.99
CALM3-212ENST00000599839 BIVM-ERCC5R4GMW8 1640 aa27.46■■□□□ 1.99
CALM3-212ENST00000599839 TARBP1Q13395 1621 aaKnown RBP27.45■■□□□ 1.98
CALM3-212ENST00000599839 WRNQ14191 1432 aaPredicted RBP eCLIP27.44■■□□□ 1.98
CALM3-212ENST00000599839 IFT140Q96RY7 1462 aa27.44■■□□□ 1.98
CALM3-212ENST00000599839 TOP2BQ02880 1626 aa27.42■■□□□ 1.98
CALM3-212ENST00000599839 RAD54L2Q9Y4B4 1467 aa27.39■■□□□ 1.98
CALM3-212ENST00000599839 ZNF608Q9ULD9 1512 aaPredicted RBP27.38■■□□□ 1.97
CALM3-212ENST00000599839 WDR97A6NE52 1622 aa27.34■■□□□ 1.97
CALM3-212ENST00000599839 EIF4G3O43432 1585 aaKnown RBP27.32■■□□□ 1.96
CALM3-212ENST00000599839 SOGA1O94964 1423 aa27.31■■□□□ 1.96
CALM3-212ENST00000599839 AQRO60306 1485 aaKnown RBP eCLIP27.2■■□□□ 1.952e-10■■□□□ 12.3
CALM3-212ENST00000599839 ABCA10Q8WWZ4 1543 aa27.18■■□□□ 1.94
CALM3-212ENST00000599839 TDRD9Q8NDG6 1382 aaKnown RBP27.16■■□□□ 1.94
CALM3-212ENST00000599839 ABCA5Q8WWZ7 1642 aa27.15■■□□□ 1.94
CALM3-212ENST00000599839 PBRM1Q86U86 1689 aa27.1■■□□□ 1.93
CALM3-212ENST00000599839 GAPVD1Q14C86 1478 aa27.03■■□□□ 1.92
CALM3-212ENST00000599839 GRIN2BQ13224 1484 aa26.98■■□□□ 1.91
CALM3-212ENST00000599839 SNAPC4Q5SXM2 1469 aa26.98■■□□□ 1.91
CALM3-212ENST00000599839 CHD1O14646 1710 aa26.98■■□□□ 1.91
CALM3-212ENST00000599839 MAGI1Q96QZ7 1491 aaPredicted RBP26.9■■□□□ 1.9
CALM3-212ENST00000599839 ADAMTS12P58397 1594 aa26.86■■□□□ 1.89
CALM3-212ENST00000599839 ERICH3Q5RHP9 1530 aa26.85■■□□□ 1.89
CALM3-212ENST00000599839 TRIM41Q8WV44 630 aa26.84■■□□□ 1.89
CALM3-212ENST00000599839 KIF27Q86VH2 1401 aa26.81■■□□□ 1.88
CALM3-212ENST00000599839 SYNJ2O15056 1496 aa26.8■■□□□ 1.88
CALM3-212ENST00000599839 RUSC2Q8N2Y8 1516 aa26.77■■□□□ 1.88
CALM3-212ENST00000599839 DNAJC5Q9H3Z4 198 aa26.76■■□□□ 1.87
CALM3-212ENST00000599839 FBLN2P98095 1184 aa26.74■■□□□ 1.87
CALM3-212ENST00000599839 CHIC1Q5VXU3 224 aa26.71■■□□□ 1.87
CALM3-212ENST00000599839 OSCARQ8IYS5 282 aa26.71■■□□□ 1.87
CALM3-212ENST00000599839 FHAD1B1AJZ9 1412 aa26.7■■□□□ 1.86
CALM3-212ENST00000599839 IGF1RP08069 1367 aa26.69■■□□□ 1.86
CALM3-212ENST00000599839 CUL7Q14999 1698 aa26.69■■□□□ 1.86
CALM3-212ENST00000599839 GRIN2AQ12879 1464 aa26.68■■□□□ 1.86
CALM3-212ENST00000599839 CHMP7Q8WUX9 453 aaPredicted RBP26.68■■□□□ 1.86
CALM3-212ENST00000599839 CLASP1Q7Z460 1538 aa26.62■■□□□ 1.85
CALM3-212ENST00000599839 CEP170Q5SW79 1584 aa26.62■■□□□ 1.85
CALM3-212ENST00000599839 NUP160Q12769 1436 aa26.54■■□□□ 1.84
CALM3-212ENST00000599839 CARMIL1Q5VZK9 1371 aa26.52■■□□□ 1.84
CALM3-212ENST00000599839 RIMBP3CA6NJZ7 1639 aa26.46■■□□□ 1.83
CALM3-212ENST00000599839 RIMBP3BA6NNM3 1639 aa26.46■■□□□ 1.83
CALM3-212ENST00000599839 RIMBP3Q9UFD9 1639 aa26.46■■□□□ 1.83
CALM3-212ENST00000599839 ARHGEF11O15085 1522 aa26.43■■□□□ 1.82
CALM3-212ENST00000599839 RAPGEF2Q9Y4G8 1499 aa26.41■■□□□ 1.82
CALM3-212ENST00000599839 PRXQ9BXM0 1461 aa26.4■■□□□ 1.82
CALM3-212ENST00000599839 EEA1Q15075 1411 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms