RNA–Protein interactions for RNA: ENST00000469717.5

TPM3-215, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 4,041 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-215ENST00000469717 NISCHQ9Y2I1 1504 aa14.85□□□□□ -0.03
TPM3-215ENST00000469717 DCAF8L2P0C7V8 631 aa13.72□□□□□ -0.21
TPM3-215ENST00000469717 HRCP23327 699 aa13.51□□□□□ -0.25
TPM3-215ENST00000469717 SHROOM4Q9ULL8 1493 aa13.51□□□□□ -0.25
TPM3-215ENST00000469717 PPARGC1BQ86YN6 1023 aaKnown RBP13.46□□□□□ -0.25
TPM3-215ENST00000469717 SUPT5HO00267 1087 aaKnown RBP13.43□□□□□ -0.26
TPM3-215ENST00000469717 PCGF6Q9BYE7 350 aa13.36□□□□□ -0.27
TPM3-215ENST00000469717 MYO15BQ96JP2 1530 aa13.28□□□□□ -0.28
TPM3-215ENST00000469717 CHIC1Q5VXU3 224 aa13.11□□□□□ -0.31
TPM3-215ENST00000469717 PELP1Q8IZL8 1130 aaKnown RBP12.96□□□□□ -0.34
TPM3-215ENST00000469717 LOC105371045A0A1W2PR82 267 aa12.95□□□□□ -0.34
TPM3-215ENST00000469717 SCAF1Q9H7N4 1312 aaKnown RBP12.9□□□□□ -0.34
TPM3-215ENST00000469717 MYT1Q01538 1121 aa12.83□□□□□ -0.36
TPM3-215ENST00000469717 DCAF1Q9Y4B6 1507 aa12.76□□□□□ -0.37
TPM3-215ENST00000469717 TRIM26Q12899 539 aaPredicted RBP12.75□□□□□ -0.37
TPM3-215ENST00000469717 ZCCHC6Q5VYS8 1495 aaKnown RBP12.63□□□□□ -0.39
TPM3-215ENST00000469717 CCDC180Q9P1Z9 1646 aa12.61□□□□□ -0.39
TPM3-215ENST00000469717 EHMT2Q96KQ7 1210 aa12.57□□□□□ -0.4
TPM3-215ENST00000469717 NEUROD1Q13562 356 aa12.54□□□□□ -0.4
TPM3-215ENST00000469717 ZEB1P37275 1124 aaPredicted RBP12.52□□□□□ -0.4
TPM3-215ENST00000469717 FAM9AQ8IZU1 332 aaPredicted RBP12.48□□□□□ -0.41
TPM3-215ENST00000469717 ACIN1Q9UKV3 1341 aaKnown RBP12.47□□□□□ -0.41
TPM3-215ENST00000469717 GTF3C3Q9Y5Q9 886 aa12.46□□□□□ -0.42
TPM3-215ENST00000469717 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.39□□□□□ -0.43
TPM3-215ENST00000469717 ABCC9O60706 1549 aa12.36□□□□□ -0.43
TPM3-215ENST00000469717 TTBK1Q5TCY1 1321 aaPredicted RBP12.34□□□□□ -0.43
TPM3-215ENST00000469717 TRIM41Q8WV44 630 aa12.29□□□□□ -0.44
TPM3-215ENST00000469717 DIEXFQ68CQ4 756 aaKnown RBP12.28□□□□□ -0.44
TPM3-215ENST00000469717 CCER1Q8TC90 406 aaPredicted RBP12.27□□□□□ -0.44
TPM3-215ENST00000469717 YTHDC1Q96MU7 727 aaKnown RBP12.24□□□□□ -0.45
TPM3-215ENST00000469717 CENPBP07199 599 aaPredicted RBP12.23□□□□□ -0.45
TPM3-215ENST00000469717 PABPN1Q86U42 306 aaKnown RBP eCLIP12.14□□□□□ -0.47
TPM3-215ENST00000469717 RB1CC1Q8TDY2 1594 aa12.06□□□□□ -0.48
TPM3-215ENST00000469717 RSF1Q96T23 1441 aaPredicted RBP12.04□□□□□ -0.48
TPM3-215ENST00000469717 MIER1Q8N108 512 aa12.02□□□□□ -0.49
TPM3-215ENST00000469717 ZNF316A6NFI3 1004 aaPredicted RBP11.98□□□□□ -0.49
TPM3-215ENST00000469717 PRKCSHP14314 528 aaPredicted RBP11.88□□□□□ -0.51
TPM3-215ENST00000469717 SCRIBQ14160 1630 aa11.88□□□□□ -0.51
TPM3-215ENST00000469717 HNRNPUL2Q1KMD3 747 aaKnown RBP11.83□□□□□ -0.52
TPM3-215ENST00000469717 ERICH6Q7L0X2 663 aa11.83□□□□□ -0.52
TPM3-215ENST00000469717 SUPT16HQ9Y5B9 1047 aaKnown RBP11.81□□□□□ -0.52
TPM3-215ENST00000469717 BCL11AQ9H165 835 aa11.8□□□□□ -0.52
TPM3-215ENST00000469717 RANGAP1P46060 587 aaPredicted RBP11.78□□□□□ -0.52
TPM3-215ENST00000469717 CECR2Q9BXF3 1484 aa11.77□□□□□ -0.53
TPM3-215ENST00000469717 TSHZ2Q9NRE2 1034 aa11.77□□□□□ -0.53
TPM3-215ENST00000469717 CEP162Q5TB80 1403 aa11.76□□□□□ -0.53
TPM3-215ENST00000469717 ANP32EQ9BTT0 268 aa11.74□□□□□ -0.53
TPM3-215ENST00000469717 CSRNP3Q8WYN3 585 aa11.73□□□□□ -0.53
TPM3-215ENST00000469717 SLC24A1O60721 1099 aa11.72□□□□□ -0.53
TPM3-215ENST00000469717 MROH2BQ7Z745 1585 aa11.71□□□□□ -0.54
TPM3-215ENST00000469717 BCANQ96GW7 911 aa11.7□□□□□ -0.54
TPM3-215ENST00000469717 WRNQ14191 1432 aaPredicted RBP eCLIP11.7□□□□□ -0.549e-7■■■□□ 18.8
TPM3-215ENST00000469717 UBTFP17480 764 aaKnown RBP11.7□□□□□ -0.54
TPM3-215ENST00000469717 ABCC8Q09428 1581 aa11.69□□□□□ -0.54
TPM3-215ENST00000469717 CCDC88BA6NC98 1476 aa11.69□□□□□ -0.54
TPM3-215ENST00000469717 WIZO95785 1651 aa11.68□□□□□ -0.54
TPM3-215ENST00000469717 SOGA1O94964 1423 aa11.67□□□□□ -0.54
TPM3-215ENST00000469717 KCNH8Q96L42 1107 aa11.65□□□□□ -0.54
TPM3-215ENST00000469717 APLP2Q06481 763 aa11.64□□□□□ -0.55
TPM3-215ENST00000469717 RUSC2Q8N2Y8 1516 aa11.64□□□□□ -0.55
TPM3-215ENST00000469717 TNIKQ9UKE5 1360 aa11.59□□□□□ -0.55
TPM3-215ENST00000469717 EIF4G1Q04637 1599 aaKnown RBP11.57□□□□□ -0.56
TPM3-215ENST00000469717 FKBP8Q14318 412 aa11.52□□□□□ -0.56
TPM3-215ENST00000469717 ITGAEP38570 1179 aa11.52□□□□□ -0.57
TPM3-215ENST00000469717 NACADO15069 1562 aa11.5□□□□□ -0.57
TPM3-215ENST00000469717 CLSPNQ9HAW4 1339 aa11.49□□□□□ -0.57
TPM3-215ENST00000469717 RBM19Q9Y4C8 960 aaKnown RBP11.48□□□□□ -0.57
TPM3-215ENST00000469717 BAZ1AQ9NRL2 1556 aaPredicted RBP11.46□□□□□ -0.57
TPM3-215ENST00000469717 DHX57Q6P158 1386 aaKnown RBP11.46□□□□□ -0.58
TPM3-215ENST00000469717 ATP1B4Q9UN42 357 aaPredicted RBP11.44□□□□□ -0.58
TPM3-215ENST00000469717 MSH5O43196 834 aa11.44□□□□□ -0.58
TPM3-215ENST00000469717 GOLGA3Q08378 1498 aa11.44□□□□□ -0.58
TPM3-215ENST00000469717 CLIP1P30622 1438 aa11.42□□□□□ -0.58
TPM3-215ENST00000469717 TRIM52Q96A61 297 aa11.4□□□□□ -0.58
TPM3-215ENST00000469717 DDX10Q13206 875 aaKnown RBP11.38□□□□□ -0.59
TPM3-215ENST00000469717 HIRIP3Q9BW71 556 aaPredicted RBP11.38□□□□□ -0.59
TPM3-215ENST00000469717 VPS8Q8N3P4 1428 aa11.37□□□□□ -0.59
TPM3-215ENST00000469717 KANK4Q5T7N3 995 aaPredicted RBP11.36□□□□□ -0.59
TPM3-215ENST00000469717 SMARCA2P51531 1590 aa11.35□□□□□ -0.59
TPM3-215ENST00000469717 EEA1Q15075 1411 aa11.33□□□□□ -0.6
TPM3-215ENST00000469717 IRX6P78412 446 aaPredicted RBP11.33□□□□□ -0.6
TPM3-215ENST00000469717 TOP2AP11388 1531 aaKnown RBP11.32□□□□□ -0.6
TPM3-215ENST00000469717 RAPGEF2Q9Y4G8 1499 aa11.31□□□□□ -0.6
TPM3-215ENST00000469717 NEFLP07196 543 aa11.31□□□□□ -0.6
TPM3-215ENST00000469717 CEP164Q9UPV0 1460 aa11.3□□□□□ -0.6
TPM3-215ENST00000469717 KIF21BO75037 1637 aa11.28□□□□□ -0.6
TPM3-215ENST00000469717 SIN3AQ96ST3 1273 aa11.26□□□□□ -0.61
TPM3-215ENST00000469717 SYNJ1O43426 1573 aa11.24□□□□□ -0.61
TPM3-215ENST00000469717 DAXXQ9UER7 740 aaPredicted RBP11.23□□□□□ -0.61
TPM3-215ENST00000469717 FBLN2P98095 1184 aa11.23□□□□□ -0.61
TPM3-215ENST00000469717 SMARCA4P51532 1647 aa11.21□□□□□ -0.62
TPM3-215ENST00000469717 WDR97A6NE52 1622 aa11.2□□□□□ -0.62
TPM3-215ENST00000469717 PPP1R15AO75807 674 aaPredicted RBP11.2□□□□□ -0.62
TPM3-215ENST00000469717 RAB3GAP2Q9H2M9 1393 aa11.19□□□□□ -0.62
TPM3-215ENST00000469717 DEKP35659 375 aaKnown RBP11.18□□□□□ -0.62
TPM3-215ENST00000469717 MAPKBP1O60336 1514 aa11.18□□□□□ -0.62
TPM3-215ENST00000469717 ARAP1Q96P48 1450 aa11.16□□□□□ -0.62
TPM3-215ENST00000469717 NBR1Q14596 966 aa11.16□□□□□ -0.62
TPM3-215ENST00000469717 ANO8Q9HCE9 1232 aaPredicted RBP11.16□□□□□ -0.62
TPM3-215ENST00000469717 FANCIQ9NVI1 1328 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms