RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 NISCHQ9Y2I1 1504 aa44.37■■■■■ 4.69
TPM3-220ENST00000509601 CCDC180Q9P1Z9 1646 aa39.51■■■■□ 3.92
TPM3-220ENST00000509601 ABCC9O60706 1549 aa39.26■■■■□ 3.88
TPM3-220ENST00000509601 RB1CC1Q8TDY2 1594 aa37.47■■■■□ 3.59
TPM3-220ENST00000509601 DCAF8L2P0C7V8 631 aa37.37■■■■□ 3.57
TPM3-220ENST00000509601 NACADO15069 1562 aa37.34■■■■□ 3.57
TPM3-220ENST00000509601 MYO15BQ96JP2 1530 aa36.98■■■■□ 3.51
TPM3-220ENST00000509601 ZCCHC6Q5VYS8 1495 aaKnown RBP36.82■■■■□ 3.48
TPM3-220ENST00000509601 PABPN1Q86U42 306 aaKnown RBP eCLIP36.72■■■■□ 3.47
TPM3-220ENST00000509601 DNAJC5BQ9UF47 199 aa36.66■■■■□ 3.46
TPM3-220ENST00000509601 DCAF1Q9Y4B6 1507 aa36.65■■■■□ 3.46
TPM3-220ENST00000509601 UNC13AQ9UPW8 1703 aa36.62■■■■□ 3.45
TPM3-220ENST00000509601 BICRAQ9NZM4 1560 aa36.44■■■■□ 3.42
TPM3-220ENST00000509601 SCRIBQ14160 1630 aa36.08■■■■□ 3.37
TPM3-220ENST00000509601 SHROOM4Q9ULL8 1493 aa35.9■■■■□ 3.34
TPM3-220ENST00000509601 EIF4G1Q04637 1599 aaKnown RBP35.47■■■■□ 3.27
TPM3-220ENST00000509601 CC2D2AQ9P2K1 1620 aa35.46■■■■□ 3.27
TPM3-220ENST00000509601 CECR2Q9BXF3 1484 aa35.33■■■■□ 3.25
TPM3-220ENST00000509601 NCAPD3P42695 1498 aa34.55■■■■□ 3.12
TPM3-220ENST00000509601 ATAD2BQ9ULI0 1458 aa34.48■■■■□ 3.11
TPM3-220ENST00000509601 SMARCA4P51532 1647 aa34.47■■■■□ 3.11
TPM3-220ENST00000509601 BAZ1AQ9NRL2 1556 aaPredicted RBP34.36■■■■□ 3.09
TPM3-220ENST00000509601 SMARCA2P51531 1590 aa34.32■■■■□ 3.09
TPM3-220ENST00000509601 HMGXB3Q12766 1538 aa34.22■■■■□ 3.07
TPM3-220ENST00000509601 MROH2BQ7Z745 1585 aa34.2■■■■□ 3.07
TPM3-220ENST00000509601 PEG3Q9GZU2 1588 aa34.15■■■■□ 3.06
TPM3-220ENST00000509601 BAZ1BQ9UIG0 1483 aaKnown RBP34.1■■■■□ 3.05
TPM3-220ENST00000509601 NESP48681 1621 aa33.86■■■■□ 3.01
TPM3-220ENST00000509601 ERCC6Q03468 1493 aa33.81■■■■□ 3
TPM3-220ENST00000509601 WIZO95785 1651 aa33.77■■■■□ 3
TPM3-220ENST00000509601 RSF1Q96T23 1441 aaPredicted RBP33.68■■■□□ 2.98
TPM3-220ENST00000509601 CUX2O14529 1486 aa33.63■■■□□ 2.97
TPM3-220ENST00000509601 LAMC3Q9Y6N6 1575 aa33.61■■■□□ 2.97
TPM3-220ENST00000509601 CADPSQ9ULU8 1353 aa33.53■■■□□ 2.96
TPM3-220ENST00000509601 PDS5BQ9NTI5 1447 aa33.45■■■□□ 2.95
TPM3-220ENST00000509601 THOC2Q8NI27 1593 aaKnown RBP33.35■■■□□ 2.93
TPM3-220ENST00000509601 TOP2AP11388 1531 aaKnown RBP33.35■■■□□ 2.93
TPM3-220ENST00000509601 KIF21AQ7Z4S6 1674 aa33.34■■■□□ 2.93
TPM3-220ENST00000509601 DNAJC5Q9H3Z4 198 aa33.33■■■□□ 2.93
TPM3-220ENST00000509601 CFTRP13569 1480 aa33.19■■■□□ 2.9
TPM3-220ENST00000509601 MRC2Q9UBG0 1479 aa33.11■■■□□ 2.89
TPM3-220ENST00000509601 FANCD2Q9BXW9 1451 aa33.09■■■□□ 2.89
TPM3-220ENST00000509601 CCDC88BA6NC98 1476 aa33.06■■■□□ 2.88
TPM3-220ENST00000509601 CEP164Q9UPV0 1460 aa33.04■■■□□ 2.88
TPM3-220ENST00000509601 WDR62O43379 1518 aa33.01■■■□□ 2.87
TPM3-220ENST00000509601 URB2Q14146 1524 aaKnown RBP32.81■■■□□ 2.84
TPM3-220ENST00000509601 PRDM2Q13029 1718 aa32.73■■■□□ 2.83
TPM3-220ENST00000509601 TOPBP1Q92547 1522 aa32.51■■■□□ 2.79
TPM3-220ENST00000509601 SUPT5HO00267 1087 aaKnown RBP32.5■■■□□ 2.79
TPM3-220ENST00000509601 ABCC8Q09428 1581 aa32.45■■■□□ 2.78
TPM3-220ENST00000509601 IFT140Q96RY7 1462 aa32.41■■■□□ 2.78
TPM3-220ENST00000509601 DNMBPQ6XZF7 1577 aa32.37■■■□□ 2.77
TPM3-220ENST00000509601 ZNF608Q9ULD9 1512 aaPredicted RBP32.36■■■□□ 2.77
TPM3-220ENST00000509601 OSCARQ8IYS5 282 aa32.29■■■□□ 2.76
TPM3-220ENST00000509601 POLA1P09884 1462 aaPredicted RBP32.2■■■□□ 2.75
TPM3-220ENST00000509601 TARBP1Q13395 1621 aaKnown RBP32.18■■■□□ 2.74
TPM3-220ENST00000509601 AQRO60306 1485 aaKnown RBP eCLIP32.14■■■□□ 2.744e-7■■□□□ 12.7
TPM3-220ENST00000509601 RAD54L2Q9Y4B4 1467 aa32.12■■■□□ 2.73
TPM3-220ENST00000509601 SOGA1O94964 1423 aa32.1■■■□□ 2.73
TPM3-220ENST00000509601 CUX1P39880 1505 aa32.09■■■□□ 2.73
TPM3-220ENST00000509601 EIF4G3O43432 1585 aaKnown RBP32.08■■■□□ 2.73
TPM3-220ENST00000509601 FGD5Q6ZNL6 1462 aa32.04■■■□□ 2.72
TPM3-220ENST00000509601 TDRD9Q8NDG6 1382 aaKnown RBP32.01■■■□□ 2.71
TPM3-220ENST00000509601 TRIM41Q8WV44 630 aa31.97■■■□□ 2.71
TPM3-220ENST00000509601 FBLN2P98095 1184 aa31.84■■■□□ 2.69
TPM3-220ENST00000509601 WDR97A6NE52 1622 aa31.8■■■□□ 2.68
TPM3-220ENST00000509601 CHD1O14646 1710 aa31.78■■■□□ 2.68
TPM3-220ENST00000509601 SNAPC4Q5SXM2 1469 aa31.74■■■□□ 2.67
TPM3-220ENST00000509601 GRIN2BQ13224 1484 aa31.73■■■□□ 2.67
TPM3-220ENST00000509601 ABCA10Q8WWZ4 1543 aa31.72■■■□□ 2.67
TPM3-220ENST00000509601 WRNQ14191 1432 aaPredicted RBP eCLIP31.71■■■□□ 2.679e-7■■■□□ 18.8
TPM3-220ENST00000509601 RIMBP3CA6NJZ7 1639 aa31.7■■■□□ 2.66
TPM3-220ENST00000509601 RIMBP3BA6NNM3 1639 aa31.7■■■□□ 2.66
TPM3-220ENST00000509601 RIMBP3Q9UFD9 1639 aa31.7■■■□□ 2.66
TPM3-220ENST00000509601 GAPVD1Q14C86 1478 aa31.68■■■□□ 2.66
TPM3-220ENST00000509601 CHMP7Q8WUX9 453 aaPredicted RBP31.68■■■□□ 2.66
TPM3-220ENST00000509601 MAGI1Q96QZ7 1491 aaPredicted RBP31.66■■■□□ 2.66
TPM3-220ENST00000509601 ARHGEF11O15085 1522 aa31.66■■■□□ 2.66
TPM3-220ENST00000509601 TOP2BQ02880 1626 aa31.65■■■□□ 2.66
TPM3-220ENST00000509601 SYNJ1O43426 1573 aa31.64■■■□□ 2.65
TPM3-220ENST00000509601 BIVM-ERCC5R4GMW8 1640 aa31.62■■■□□ 2.65
TPM3-220ENST00000509601 ABCA5Q8WWZ7 1642 aa31.57■■■□□ 2.64
TPM3-220ENST00000509601 SYNJ2O15056 1496 aa31.57■■■□□ 2.64
TPM3-220ENST00000509601 PBRM1Q86U86 1689 aa31.54■■■□□ 2.64
TPM3-220ENST00000509601 CYB5RLQ6IPT4 315 aa31.52■■■□□ 2.64
TPM3-220ENST00000509601 CLASP1Q7Z460 1538 aa31.47■■■□□ 2.63
TPM3-220ENST00000509601 ARAP1Q96P48 1450 aa31.4■■■□□ 2.62
TPM3-220ENST00000509601 GRIN2AQ12879 1464 aa31.31■■■□□ 2.6
TPM3-220ENST00000509601 FHAD1B1AJZ9 1412 aa31.31■■■□□ 2.6
TPM3-220ENST00000509601 ADAMTS12P58397 1594 aa31.3■■■□□ 2.6
TPM3-220ENST00000509601 ERICH3Q5RHP9 1530 aa31.29■■■□□ 2.6
TPM3-220ENST00000509601 NUP160Q12769 1436 aa31.23■■■□□ 2.59
TPM3-220ENST00000509601 CEP170Q5SW79 1584 aa31.17■■■□□ 2.58
TPM3-220ENST00000509601 IGF1RP08069 1367 aa31.12■■■□□ 2.57
TPM3-220ENST00000509601 KIF27Q86VH2 1401 aa31.07■■■□□ 2.57
TPM3-220ENST00000509601 ERCC6L2Q5T890 1561 aa31.05■■■□□ 2.56
TPM3-220ENST00000509601 JPH4Q96JJ6 628 aa31■■■□□ 2.55
TPM3-220ENST00000509601 SHROOM2Q13796 1616 aa30.98■■■□□ 2.55
TPM3-220ENST00000509601 TRHP20396 242 aaPredicted RBP30.98■■■□□ 2.55
TPM3-220ENST00000509601 PRG4Q92954 1404 aaPredicted RBP30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms