RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 NISCHQ9Y2I1 1504 aa33.03■■■□□ 2.88
TPM3-211ENST00000368531 CCDC180Q9P1Z9 1646 aa29.2■■■□□ 2.27
TPM3-211ENST00000368531 ABCC9O60706 1549 aa28.36■■■□□ 2.13
TPM3-211ENST00000368531 DCAF8L2P0C7V8 631 aa27.65■■■□□ 2.02
TPM3-211ENST00000368531 ZCCHC6Q5VYS8 1495 aaKnown RBP27.56■■■□□ 2
TPM3-211ENST00000368531 NACADO15069 1562 aa27.37■■□□□ 1.97
TPM3-211ENST00000368531 RB1CC1Q8TDY2 1594 aa27.35■■□□□ 1.97
TPM3-211ENST00000368531 DCAF1Q9Y4B6 1507 aa27.26■■□□□ 1.95
TPM3-211ENST00000368531 MYO15BQ96JP2 1530 aa27.22■■□□□ 1.95
TPM3-211ENST00000368531 UNC13AQ9UPW8 1703 aa26.82■■□□□ 1.88
TPM3-211ENST00000368531 SCRIBQ14160 1630 aa26.78■■□□□ 1.88
TPM3-211ENST00000368531 PABPN1Q86U42 306 aaKnown RBP eCLIP26.59■■□□□ 1.85
TPM3-211ENST00000368531 BICRAQ9NZM4 1560 aa26.51■■□□□ 1.83
TPM3-211ENST00000368531 SHROOM4Q9ULL8 1493 aa26.47■■□□□ 1.83
TPM3-211ENST00000368531 EIF4G1Q04637 1599 aaKnown RBP25.78■■□□□ 1.72
TPM3-211ENST00000368531 AEBP2Q6ZN18 517 aaPredicted RBP25.78■■□□□ 1.72
TPM3-211ENST00000368531 CECR2Q9BXF3 1484 aa25.75■■□□□ 1.71
TPM3-211ENST00000368531 DNAJC5BQ9UF47 199 aa25.72■■□□□ 1.71
TPM3-211ENST00000368531 CC2D2AQ9P2K1 1620 aa25.63■■□□□ 1.69
TPM3-211ENST00000368531 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
TPM3-211ENST00000368531 BAZ1AQ9NRL2 1556 aaPredicted RBP25.56■■□□□ 1.68
TPM3-211ENST00000368531 MROH2BQ7Z745 1585 aa25.51■■□□□ 1.67
TPM3-211ENST00000368531 ATAD2BQ9ULI0 1458 aa25.34■■□□□ 1.65
TPM3-211ENST00000368531 SMARCA2P51531 1590 aa25.31■■□□□ 1.64
TPM3-211ENST00000368531 RSF1Q96T23 1441 aaPredicted RBP25.3■■□□□ 1.64
TPM3-211ENST00000368531 WIZO95785 1651 aa25.29■■□□□ 1.64
TPM3-211ENST00000368531 PEG3Q9GZU2 1588 aa25.24■■□□□ 1.63
TPM3-211ENST00000368531 NCAPD3P42695 1498 aa25.23■■□□□ 1.63
TPM3-211ENST00000368531 BAZ1BQ9UIG0 1483 aaKnown RBP25.17■■□□□ 1.62
TPM3-211ENST00000368531 HMGXB3Q12766 1538 aa25.14■■□□□ 1.62
TPM3-211ENST00000368531 SUPT5HO00267 1087 aaKnown RBP25.07■■□□□ 1.6
TPM3-211ENST00000368531 TOP2AP11388 1531 aaKnown RBP24.96■■□□□ 1.59
TPM3-211ENST00000368531 CCDC88BA6NC98 1476 aa24.7■■□□□ 1.55
TPM3-211ENST00000368531 NESP48681 1621 aa24.64■■□□□ 1.53
TPM3-211ENST00000368531 CADPSQ9ULU8 1353 aa24.54■■□□□ 1.52
TPM3-211ENST00000368531 LAMC3Q9Y6N6 1575 aa24.54■■□□□ 1.52
TPM3-211ENST00000368531 CHIC1Q5VXU3 224 aa24.53■■□□□ 1.52
TPM3-211ENST00000368531 CFTRP13569 1480 aa24.45■■□□□ 1.51
TPM3-211ENST00000368531 ERCC6Q03468 1493 aa24.4■■□□□ 1.5
TPM3-211ENST00000368531 PRDM2Q13029 1718 aa24.37■■□□□ 1.49
TPM3-211ENST00000368531 KIF21AQ7Z4S6 1674 aa24.37■■□□□ 1.49
TPM3-211ENST00000368531 PDS5BQ9NTI5 1447 aa24.36■■□□□ 1.49
TPM3-211ENST00000368531 FANCD2Q9BXW9 1451 aa24.3■■□□□ 1.48
TPM3-211ENST00000368531 CEP164Q9UPV0 1460 aa24.23■■□□□ 1.47
TPM3-211ENST00000368531 THOC2Q8NI27 1593 aaKnown RBP24.13■■□□□ 1.45
TPM3-211ENST00000368531 MRC2Q9UBG0 1479 aa24.11■■□□□ 1.45
TPM3-211ENST00000368531 URB2Q14146 1524 aaKnown RBP24.04■■□□□ 1.44
TPM3-211ENST00000368531 WDR62O43379 1518 aa24■■□□□ 1.43
TPM3-211ENST00000368531 ABCC8Q09428 1581 aa23.96■■□□□ 1.43
TPM3-211ENST00000368531 TOPBP1Q92547 1522 aa23.94■■□□□ 1.42
TPM3-211ENST00000368531 DNMBPQ6XZF7 1577 aa23.94■■□□□ 1.42
TPM3-211ENST00000368531 CUX2O14529 1486 aa23.93■■□□□ 1.42
TPM3-211ENST00000368531 CUX1P39880 1505 aa23.9■■□□□ 1.42
TPM3-211ENST00000368531 WRNQ14191 1432 aaPredicted RBP eCLIP23.86■■□□□ 1.419e-7■■■□□ 18.8
TPM3-211ENST00000368531 SYNJ1O43426 1573 aa23.81■■□□□ 1.4
TPM3-211ENST00000368531 FGD5Q6ZNL6 1462 aa23.77■■□□□ 1.4
TPM3-211ENST00000368531 BIVM-ERCC5R4GMW8 1640 aa23.77■■□□□ 1.4
TPM3-211ENST00000368531 TOP2BQ02880 1626 aa23.76■■□□□ 1.39
TPM3-211ENST00000368531 POLA1P09884 1462 aaPredicted RBP23.75■■□□□ 1.39
TPM3-211ENST00000368531 RAD54L2Q9Y4B4 1467 aa23.7■■□□□ 1.38
TPM3-211ENST00000368531 SOGA1O94964 1423 aa23.69■■□□□ 1.38
TPM3-211ENST00000368531 IFT140Q96RY7 1462 aa23.68■■□□□ 1.38
TPM3-211ENST00000368531 TARBP1Q13395 1621 aaKnown RBP23.65■■□□□ 1.38
TPM3-211ENST00000368531 ZNF608Q9ULD9 1512 aaPredicted RBP23.6■■□□□ 1.37
TPM3-211ENST00000368531 TRIM41Q8WV44 630 aa23.6■■□□□ 1.37
TPM3-211ENST00000368531 WDR97A6NE52 1622 aa23.55■■□□□ 1.36
TPM3-211ENST00000368531 TDRD9Q8NDG6 1382 aaKnown RBP23.54■■□□□ 1.36
TPM3-211ENST00000368531 AQRO60306 1485 aaKnown RBP eCLIP23.52■■□□□ 1.364e-7■■□□□ 12.7
TPM3-211ENST00000368531 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
TPM3-211ENST00000368531 EIF4G3O43432 1585 aaKnown RBP23.51■■□□□ 1.35
TPM3-211ENST00000368531 GAPVD1Q14C86 1478 aa23.41■■□□□ 1.34
TPM3-211ENST00000368531 ABCA5Q8WWZ7 1642 aa23.41■■□□□ 1.34
TPM3-211ENST00000368531 PBRM1Q86U86 1689 aa23.38■■□□□ 1.33
TPM3-211ENST00000368531 GRIN2BQ13224 1484 aa23.34■■□□□ 1.33
TPM3-211ENST00000368531 KIF27Q86VH2 1401 aa23.33■■□□□ 1.33
TPM3-211ENST00000368531 RUSC2Q8N2Y8 1516 aa23.3■■□□□ 1.32
TPM3-211ENST00000368531 SNAPC4Q5SXM2 1469 aa23.3■■□□□ 1.32
TPM3-211ENST00000368531 FBLN2P98095 1184 aa23.25■■□□□ 1.31
TPM3-211ENST00000368531 MAGI1Q96QZ7 1491 aaPredicted RBP23.23■■□□□ 1.31
TPM3-211ENST00000368531 ERICH3Q5RHP9 1530 aa23.23■■□□□ 1.31
TPM3-211ENST00000368531 CHD1O14646 1710 aa23.21■■□□□ 1.31
TPM3-211ENST00000368531 FAM9AQ8IZU1 332 aaPredicted RBP23.2■■□□□ 1.3
TPM3-211ENST00000368531 IGF1RP08069 1367 aa23.19■■□□□ 1.3
TPM3-211ENST00000368531 CHMP7Q8WUX9 453 aaPredicted RBP23.18■■□□□ 1.3
TPM3-211ENST00000368531 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
TPM3-211ENST00000368531 SYNJ2O15056 1496 aa23.14■■□□□ 1.29
TPM3-211ENST00000368531 FHAD1B1AJZ9 1412 aa23.13■■□□□ 1.29
TPM3-211ENST00000368531 CUL7Q14999 1698 aa23.11■■□□□ 1.29
TPM3-211ENST00000368531 CARMIL1Q5VZK9 1371 aa23.09■■□□□ 1.29
TPM3-211ENST00000368531 OSCARQ8IYS5 282 aa23.07■■□□□ 1.28
TPM3-211ENST00000368531 CSRNP3Q8WYN3 585 aa23.07■■□□□ 1.28
TPM3-211ENST00000368531 EEA1Q15075 1411 aa23.07■■□□□ 1.28
TPM3-211ENST00000368531 GRIN2AQ12879 1464 aa23.05■■□□□ 1.28
TPM3-211ENST00000368531 RAPGEF2Q9Y4G8 1499 aa22.97■■□□□ 1.27
TPM3-211ENST00000368531 CEP170Q5SW79 1584 aa22.94■■□□□ 1.26
TPM3-211ENST00000368531 PRXQ9BXM0 1461 aa22.94■■□□□ 1.26
TPM3-211ENST00000368531 EHMT2Q96KQ7 1210 aa22.94■■□□□ 1.26
TPM3-211ENST00000368531 NUP160Q12769 1436 aa22.9■■□□□ 1.26
TPM3-211ENST00000368531 CLASP1Q7Z460 1538 aa22.87■■□□□ 1.25
TPM3-211ENST00000368531 DNAJC5Q9H3Z4 198 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms