RNA–Protein interactions for RNA: ENST00000491833.5

SSR4-212, Transcript of signal sequence receptor subunit 4, humanhuman

TSL 3

Gene SSR4, Length 921 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR4-212ENST00000491833 NISCHQ9Y2I1 1504 aa36.8■■■■□ 3.48
SSR4-212ENST00000491833 ABCC9O60706 1549 aa33.47■■■□□ 2.95
SSR4-212ENST00000491833 CCDC180Q9P1Z9 1646 aa33.25■■■□□ 2.91
SSR4-212ENST00000491833 RB1CC1Q8TDY2 1594 aa31.77■■■□□ 2.68
SSR4-212ENST00000491833 DNAJC5BQ9UF47 199 aa31.55■■■□□ 2.64
SSR4-212ENST00000491833 NACADO15069 1562 aa31.46■■■□□ 2.63
SSR4-212ENST00000491833 DCAF8L2P0C7V8 631 aa31.09■■■□□ 2.57
SSR4-212ENST00000491833 UNC13AQ9UPW8 1703 aa31.04■■■□□ 2.56
SSR4-212ENST00000491833 PABPN1Q86U42 306 aaKnown RBP eCLIP31.03■■■□□ 2.56
SSR4-212ENST00000491833 MYO15BQ96JP2 1530 aa30.93■■■□□ 2.54
SSR4-212ENST00000491833 BICRAQ9NZM4 1560 aa30.81■■■□□ 2.52
SSR4-212ENST00000491833 ZCCHC6Q5VYS8 1495 aaKnown RBP30.48■■■□□ 2.47
SSR4-212ENST00000491833 SHROOM4Q9ULL8 1493 aa30.46■■■□□ 2.47
SSR4-212ENST00000491833 DCAF1Q9Y4B6 1507 aa30.42■■■□□ 2.46
SSR4-212ENST00000491833 CC2D2AQ9P2K1 1620 aa30.25■■■□□ 2.43
SSR4-212ENST00000491833 SCRIBQ14160 1630 aa30.24■■■□□ 2.43
SSR4-212ENST00000491833 CECR2Q9BXF3 1484 aa30.19■■■□□ 2.42
SSR4-212ENST00000491833 EIF4G1Q04637 1599 aaKnown RBP30.11■■■□□ 2.41
SSR4-212ENST00000491833 DNAJC5Q9H3Z4 198 aa29.24■■■□□ 2.27
SSR4-212ENST00000491833 CUX2O14529 1486 aa29.03■■■□□ 2.24
SSR4-212ENST00000491833 NCAPD3P42695 1498 aa29■■■□□ 2.23
SSR4-212ENST00000491833 ERCC6Q03468 1493 aa28.96■■■□□ 2.23
SSR4-212ENST00000491833 ATAD2BQ9ULI0 1458 aa28.88■■■□□ 2.21
SSR4-212ENST00000491833 HMGXB3Q12766 1538 aa28.84■■■□□ 2.21
SSR4-212ENST00000491833 SMARCA2P51531 1590 aa28.83■■■□□ 2.21
SSR4-212ENST00000491833 SMARCA4P51532 1647 aa28.82■■■□□ 2.2
SSR4-212ENST00000491833 NESP48681 1621 aa28.65■■■□□ 2.18
SSR4-212ENST00000491833 BAZ1AQ9NRL2 1556 aaPredicted RBP28.63■■■□□ 2.17
SSR4-212ENST00000491833 BAZ1BQ9UIG0 1483 aaKnown RBP28.62■■■□□ 2.17
SSR4-212ENST00000491833 PEG3Q9GZU2 1588 aa28.54■■■□□ 2.16
SSR4-212ENST00000491833 THOC2Q8NI27 1593 aaKnown RBP28.5■■■□□ 2.15
SSR4-212ENST00000491833 LAMC3Q9Y6N6 1575 aa28.46■■■□□ 2.15
SSR4-212ENST00000491833 MROH2BQ7Z745 1585 aa28.34■■■□□ 2.13
SSR4-212ENST00000491833 KIF21AQ7Z4S6 1674 aa28.33■■■□□ 2.13
SSR4-212ENST00000491833 PDS5BQ9NTI5 1447 aa28.26■■■□□ 2.12
SSR4-212ENST00000491833 CADPSQ9ULU8 1353 aa28.1■■■□□ 2.09
SSR4-212ENST00000491833 MRC2Q9UBG0 1479 aa28.08■■■□□ 2.09
SSR4-212ENST00000491833 WDR62O43379 1518 aa28.02■■■□□ 2.08
SSR4-212ENST00000491833 WIZO95785 1651 aa28■■■□□ 2.07
SSR4-212ENST00000491833 CEP164Q9UPV0 1460 aa27.9■■■□□ 2.06
SSR4-212ENST00000491833 TRIM41Q8WV44 630 aa27.86■■■□□ 2.05
SSR4-212ENST00000491833 FANCD2Q9BXW9 1451 aa27.82■■■□□ 2.04
SSR4-212ENST00000491833 CFTRP13569 1480 aa27.73■■■□□ 2.03
SSR4-212ENST00000491833 TOP2AP11388 1531 aaKnown RBP27.67■■■□□ 2.02
SSR4-212ENST00000491833 RSF1Q96T23 1441 aaPredicted RBP27.61■■■□□ 2.01
SSR4-212ENST00000491833 URB2Q14146 1524 aaKnown RBP27.6■■■□□ 2.01
SSR4-212ENST00000491833 OSCARQ8IYS5 282 aa27.54■■■□□ 2
SSR4-212ENST00000491833 PRDM2Q13029 1718 aa27.53■■■□□ 2
SSR4-212ENST00000491833 IFT140Q96RY7 1462 aa27.34■■□□□ 1.97
SSR4-212ENST00000491833 RIMBP3CA6NJZ7 1639 aa27.31■■□□□ 1.96
SSR4-212ENST00000491833 RIMBP3BA6NNM3 1639 aa27.31■■□□□ 1.96
SSR4-212ENST00000491833 RIMBP3Q9UFD9 1639 aa27.31■■□□□ 1.96
SSR4-212ENST00000491833 CCDC88BA6NC98 1476 aa27.29■■□□□ 1.96
SSR4-212ENST00000491833 ZNF608Q9ULD9 1512 aaPredicted RBP27.29■■□□□ 1.96
SSR4-212ENST00000491833 TOPBP1Q92547 1522 aa27.26■■□□□ 1.95
SSR4-212ENST00000491833 EIF4G3O43432 1585 aaKnown RBP27.21■■□□□ 1.95
SSR4-212ENST00000491833 ARHGEF11O15085 1522 aa27.2■■□□□ 1.94
SSR4-212ENST00000491833 ABCC8Q09428 1581 aa27.18■■□□□ 1.94
SSR4-212ENST00000491833 DNMBPQ6XZF7 1577 aa27.16■■□□□ 1.94
SSR4-212ENST00000491833 CHD1O14646 1710 aa27.05■■□□□ 1.92
SSR4-212ENST00000491833 TARBP1Q13395 1621 aaKnown RBP27.05■■□□□ 1.92
SSR4-212ENST00000491833 AQRO60306 1485 aaKnown RBP eCLIP26.99■■□□□ 1.91
SSR4-212ENST00000491833 POLA1P09884 1462 aaPredicted RBP26.96■■□□□ 1.91
SSR4-212ENST00000491833 CYB5RLQ6IPT4 315 aa26.9■■□□□ 1.9
SSR4-212ENST00000491833 ARAP1Q96P48 1450 aa26.89■■□□□ 1.9
SSR4-212ENST00000491833 FBLN2P98095 1184 aa26.85■■□□□ 1.89
SSR4-212ENST00000491833 RAD54L2Q9Y4B4 1467 aa26.82■■□□□ 1.88
SSR4-212ENST00000491833 WDR97A6NE52 1622 aa26.82■■□□□ 1.88
SSR4-212ENST00000491833 SOGA1O94964 1423 aa26.78■■□□□ 1.88
SSR4-212ENST00000491833 SNAPC4Q5SXM2 1469 aa26.76■■□□□ 1.87
SSR4-212ENST00000491833 TDRD9Q8NDG6 1382 aaKnown RBP26.75■■□□□ 1.87
SSR4-212ENST00000491833 FGD5Q6ZNL6 1462 aa26.74■■□□□ 1.87
SSR4-212ENST00000491833 TRHP20396 242 aaPredicted RBP26.74■■□□□ 1.87
SSR4-212ENST00000491833 CLASP1Q7Z460 1538 aa26.72■■□□□ 1.87
SSR4-212ENST00000491833 SYNJ1O43426 1573 aa26.7■■□□□ 1.86
SSR4-212ENST00000491833 MAGI1Q96QZ7 1491 aaPredicted RBP26.68■■□□□ 1.86
SSR4-212ENST00000491833 CUX1P39880 1505 aa26.65■■□□□ 1.86
SSR4-212ENST00000491833 GRIN2BQ13224 1484 aa26.63■■□□□ 1.85
SSR4-212ENST00000491833 CHMP7Q8WUX9 453 aaPredicted RBP26.61■■□□□ 1.85
SSR4-212ENST00000491833 SYNJ2O15056 1496 aa26.59■■□□□ 1.85
SSR4-212ENST00000491833 PBRM1Q86U86 1689 aa26.57■■□□□ 1.84
SSR4-212ENST00000491833 GAPVD1Q14C86 1478 aa26.49■■□□□ 1.83
SSR4-212ENST00000491833 ABCA5Q8WWZ7 1642 aa26.46■■□□□ 1.83
SSR4-212ENST00000491833 ABCA10Q8WWZ4 1543 aa26.43■■□□□ 1.82
SSR4-212ENST00000491833 GRIN2AQ12879 1464 aa26.3■■□□□ 1.8
SSR4-212ENST00000491833 ADAMTS12P58397 1594 aa26.29■■□□□ 1.8
SSR4-212ENST00000491833 ERCC6L2Q5T890 1561 aa26.24■■□□□ 1.79
SSR4-212ENST00000491833 WRNQ14191 1432 aaPredicted RBP eCLIP26.23■■□□□ 1.79
SSR4-212ENST00000491833 CEP170Q5SW79 1584 aa26.23■■□□□ 1.79
SSR4-212ENST00000491833 NUP160Q12769 1436 aa26.22■■□□□ 1.79
SSR4-212ENST00000491833 AEBP2Q6ZN18 517 aaPredicted RBP26.21■■□□□ 1.79
SSR4-212ENST00000491833 BIVM-ERCC5R4GMW8 1640 aa26.2■■□□□ 1.78
SSR4-212ENST00000491833 TOP2BQ02880 1626 aa26.18■■□□□ 1.78
SSR4-212ENST00000491833 SHROOM2Q13796 1616 aa26.17■■□□□ 1.78
SSR4-212ENST00000491833 FHAD1B1AJZ9 1412 aa26.14■■□□□ 1.78
SSR4-212ENST00000491833 ERICH3Q5RHP9 1530 aa26.11■■□□□ 1.77
SSR4-212ENST00000491833 SUPT5HO00267 1087 aaKnown RBP26.1■■□□□ 1.77
SSR4-212ENST00000491833 KIF13AQ9H1H9 1805 aa25.98■■□□□ 1.75
SSR4-212ENST00000491833 PRG4Q92954 1404 aaPredicted RBP25.97■■□□□ 1.75
SSR4-212ENST00000491833 RUSC2Q8N2Y8 1516 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms