RNA–Protein interactions for RNA: ENST00000471724.5

SSR4-207, Transcript of signal sequence receptor subunit 4, humanhuman

TSL 3

Gene SSR4, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR4-207ENST00000471724 NISCHQ9Y2I1 1504 aa33.57■■■□□ 2.96
SSR4-207ENST00000471724 CCDC180Q9P1Z9 1646 aa29.85■■■□□ 2.37
SSR4-207ENST00000471724 ABCC9O60706 1549 aa28.87■■■□□ 2.21
SSR4-207ENST00000471724 ZCCHC6Q5VYS8 1495 aaKnown RBP28.08■■■□□ 2.09
SSR4-207ENST00000471724 NACADO15069 1562 aa27.89■■■□□ 2.05
SSR4-207ENST00000471724 DCAF1Q9Y4B6 1507 aa27.87■■■□□ 2.05
SSR4-207ENST00000471724 MYO15BQ96JP2 1530 aa27.86■■■□□ 2.05
SSR4-207ENST00000471724 RB1CC1Q8TDY2 1594 aa27.84■■■□□ 2.05
SSR4-207ENST00000471724 DCAF8L2P0C7V8 631 aa27.69■■■□□ 2.02
SSR4-207ENST00000471724 UNC13AQ9UPW8 1703 aa27.27■■□□□ 1.96
SSR4-207ENST00000471724 SCRIBQ14160 1630 aa27.15■■□□□ 1.94
SSR4-207ENST00000471724 PABPN1Q86U42 306 aaKnown RBP eCLIP26.92■■□□□ 1.9
SSR4-207ENST00000471724 BICRAQ9NZM4 1560 aa26.92■■□□□ 1.9
SSR4-207ENST00000471724 SHROOM4Q9ULL8 1493 aa26.81■■□□□ 1.88
SSR4-207ENST00000471724 DNAJC5BQ9UF47 199 aa26.55■■□□□ 1.84
SSR4-207ENST00000471724 EIF4G1Q04637 1599 aaKnown RBP26.22■■□□□ 1.79
SSR4-207ENST00000471724 CC2D2AQ9P2K1 1620 aa26.14■■□□□ 1.78
SSR4-207ENST00000471724 BAZ1AQ9NRL2 1556 aaPredicted RBP26.06■■□□□ 1.76
SSR4-207ENST00000471724 SMARCA4P51532 1647 aa26.03■■□□□ 1.76
SSR4-207ENST00000471724 CECR2Q9BXF3 1484 aa26.02■■□□□ 1.76
SSR4-207ENST00000471724 MROH2BQ7Z745 1585 aa25.84■■□□□ 1.73
SSR4-207ENST00000471724 SMARCA2P51531 1590 aa25.8■■□□□ 1.72
SSR4-207ENST00000471724 PEG3Q9GZU2 1588 aa25.78■■□□□ 1.72
SSR4-207ENST00000471724 ATAD2BQ9ULI0 1458 aa25.71■■□□□ 1.71
SSR4-207ENST00000471724 HMGXB3Q12766 1538 aa25.66■■□□□ 1.7
SSR4-207ENST00000471724 RSF1Q96T23 1441 aaPredicted RBP25.65■■□□□ 1.7
SSR4-207ENST00000471724 NCAPD3P42695 1498 aa25.64■■□□□ 1.69
SSR4-207ENST00000471724 WIZO95785 1651 aa25.63■■□□□ 1.69
SSR4-207ENST00000471724 BAZ1BQ9UIG0 1483 aaKnown RBP25.57■■□□□ 1.68
SSR4-207ENST00000471724 TOP2AP11388 1531 aaKnown RBP25.42■■□□□ 1.66
SSR4-207ENST00000471724 SUPT5HO00267 1087 aaKnown RBP25.17■■□□□ 1.62
SSR4-207ENST00000471724 CCDC88BA6NC98 1476 aa25.01■■□□□ 1.59
SSR4-207ENST00000471724 LAMC3Q9Y6N6 1575 aa25.01■■□□□ 1.59
SSR4-207ENST00000471724 ERCC6Q03468 1493 aa24.96■■□□□ 1.59
SSR4-207ENST00000471724 PRDM2Q13029 1718 aa24.93■■□□□ 1.58
SSR4-207ENST00000471724 NESP48681 1621 aa24.92■■□□□ 1.58
SSR4-207ENST00000471724 CADPSQ9ULU8 1353 aa24.88■■□□□ 1.57
SSR4-207ENST00000471724 CFTRP13569 1480 aa24.85■■□□□ 1.57
SSR4-207ENST00000471724 PDS5BQ9NTI5 1447 aa24.78■■□□□ 1.56
SSR4-207ENST00000471724 CUX2O14529 1486 aa24.77■■□□□ 1.56
SSR4-207ENST00000471724 KIF21AQ7Z4S6 1674 aa24.75■■□□□ 1.55
SSR4-207ENST00000471724 FANCD2Q9BXW9 1451 aa24.64■■□□□ 1.54
SSR4-207ENST00000471724 CEP164Q9UPV0 1460 aa24.63■■□□□ 1.53
SSR4-207ENST00000471724 THOC2Q8NI27 1593 aaKnown RBP24.63■■□□□ 1.53
SSR4-207ENST00000471724 MRC2Q9UBG0 1479 aa24.51■■□□□ 1.51
SSR4-207ENST00000471724 WDR62O43379 1518 aa24.44■■□□□ 1.5
SSR4-207ENST00000471724 ABCC8Q09428 1581 aa24.37■■□□□ 1.49
SSR4-207ENST00000471724 DNMBPQ6XZF7 1577 aa24.37■■□□□ 1.49
SSR4-207ENST00000471724 URB2Q14146 1524 aaKnown RBP24.36■■□□□ 1.49
SSR4-207ENST00000471724 TOPBP1Q92547 1522 aa24.3■■□□□ 1.48
SSR4-207ENST00000471724 CUX1P39880 1505 aa24.25■■□□□ 1.47
SSR4-207ENST00000471724 BIVM-ERCC5R4GMW8 1640 aa24.24■■□□□ 1.47
SSR4-207ENST00000471724 WRNQ14191 1432 aaPredicted RBP eCLIP24.22■■□□□ 1.47
SSR4-207ENST00000471724 TOP2BQ02880 1626 aa24.21■■□□□ 1.47
SSR4-207ENST00000471724 SYNJ1O43426 1573 aa24.17■■□□□ 1.46
SSR4-207ENST00000471724 POLA1P09884 1462 aaPredicted RBP24.12■■□□□ 1.45
SSR4-207ENST00000471724 FGD5Q6ZNL6 1462 aa24.12■■□□□ 1.45
SSR4-207ENST00000471724 DNAJC5Q9H3Z4 198 aa24.11■■□□□ 1.45
SSR4-207ENST00000471724 IFT140Q96RY7 1462 aa24.07■■□□□ 1.44
SSR4-207ENST00000471724 TARBP1Q13395 1621 aaKnown RBP24.05■■□□□ 1.44
SSR4-207ENST00000471724 WDR97A6NE52 1622 aa24.02■■□□□ 1.44
SSR4-207ENST00000471724 SOGA1O94964 1423 aa23.97■■□□□ 1.43
SSR4-207ENST00000471724 RAD54L2Q9Y4B4 1467 aa23.94■■□□□ 1.42
SSR4-207ENST00000471724 EIF4G3O43432 1585 aaKnown RBP23.92■■□□□ 1.42
SSR4-207ENST00000471724 ABCA10Q8WWZ4 1543 aa23.91■■□□□ 1.42
SSR4-207ENST00000471724 ZNF608Q9ULD9 1512 aaPredicted RBP23.86■■□□□ 1.41
SSR4-207ENST00000471724 ABCA5Q8WWZ7 1642 aa23.85■■□□□ 1.41
SSR4-207ENST00000471724 PBRM1Q86U86 1689 aa23.81■■□□□ 1.4
SSR4-207ENST00000471724 TRIM41Q8WV44 630 aa23.8■■□□□ 1.4
SSR4-207ENST00000471724 TDRD9Q8NDG6 1382 aaKnown RBP23.75■■□□□ 1.39
SSR4-207ENST00000471724 GAPVD1Q14C86 1478 aa23.75■■□□□ 1.39
SSR4-207ENST00000471724 AQRO60306 1485 aaKnown RBP eCLIP23.74■■□□□ 1.39
SSR4-207ENST00000471724 GRIN2BQ13224 1484 aa23.71■■□□□ 1.39
SSR4-207ENST00000471724 CHIC1Q5VXU3 224 aa23.71■■□□□ 1.39
SSR4-207ENST00000471724 KIF27Q86VH2 1401 aa23.69■■□□□ 1.38
SSR4-207ENST00000471724 OSCARQ8IYS5 282 aa23.69■■□□□ 1.38
SSR4-207ENST00000471724 ERICH3Q5RHP9 1530 aa23.67■■□□□ 1.38
SSR4-207ENST00000471724 MAGI1Q96QZ7 1491 aaPredicted RBP23.65■■□□□ 1.38
SSR4-207ENST00000471724 SNAPC4Q5SXM2 1469 aa23.62■■□□□ 1.37
SSR4-207ENST00000471724 CUL7Q14999 1698 aa23.6■■□□□ 1.37
SSR4-207ENST00000471724 ADAMTS12P58397 1594 aa23.6■■□□□ 1.37
SSR4-207ENST00000471724 CHD1O14646 1710 aa23.57■■□□□ 1.36
SSR4-207ENST00000471724 EEA1Q15075 1411 aa23.54■■□□□ 1.36
SSR4-207ENST00000471724 SYNJ2O15056 1496 aa23.53■■□□□ 1.36
SSR4-207ENST00000471724 FHAD1B1AJZ9 1412 aa23.49■■□□□ 1.35
SSR4-207ENST00000471724 RUSC2Q8N2Y8 1516 aa23.49■■□□□ 1.35
SSR4-207ENST00000471724 FBLN2P98095 1184 aa23.47■■□□□ 1.35
SSR4-207ENST00000471724 IGF1RP08069 1367 aa23.45■■□□□ 1.34
SSR4-207ENST00000471724 CHMP7Q8WUX9 453 aaPredicted RBP23.42■■□□□ 1.34
SSR4-207ENST00000471724 GRIN2AQ12879 1464 aa23.42■■□□□ 1.34
SSR4-207ENST00000471724 CARMIL1Q5VZK9 1371 aa23.36■■□□□ 1.33
SSR4-207ENST00000471724 RAPGEF2Q9Y4G8 1499 aa23.32■■□□□ 1.32
SSR4-207ENST00000471724 PRXQ9BXM0 1461 aa23.31■■□□□ 1.32
SSR4-207ENST00000471724 RIMBP3CA6NJZ7 1639 aa23.3■■□□□ 1.32
SSR4-207ENST00000471724 RIMBP3BA6NNM3 1639 aa23.3■■□□□ 1.32
SSR4-207ENST00000471724 KIF21BO75037 1637 aa23.3■■□□□ 1.32
SSR4-207ENST00000471724 RIMBP3Q9UFD9 1639 aa23.3■■□□□ 1.32
SSR4-207ENST00000471724 CEP170Q5SW79 1584 aa23.29■■□□□ 1.32
SSR4-207ENST00000471724 CSRNP3Q8WYN3 585 aa23.29■■□□□ 1.32
SSR4-207ENST00000471724 ARHGEF11O15085 1522 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms