RNA–Protein interactions for RNA: ENST00000483871.6

SRSF6-202, Transcript of serine and arginine rich splicing factor 6, humanhuman

TSL 2

Gene SRSF6, Length 1,680 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF6-202ENST00000483871 NISCHQ9Y2I1 1504 aa33.35■■■□□ 2.93
SRSF6-202ENST00000483871 CCDC180Q9P1Z9 1646 aa29.33■■■□□ 2.29
SRSF6-202ENST00000483871 ABCC9O60706 1549 aa28.42■■■□□ 2.14
SRSF6-202ENST00000483871 DCAF8L2P0C7V8 631 aa27.87■■■□□ 2.05
SRSF6-202ENST00000483871 ZCCHC6Q5VYS8 1495 aaKnown RBP27.87■■■□□ 2.05
SRSF6-202ENST00000483871 DCAF1Q9Y4B6 1507 aa27.53■■■□□ 2
SRSF6-202ENST00000483871 NACADO15069 1562 aa27.5■■□□□ 1.99
SRSF6-202ENST00000483871 MYO15BQ96JP2 1530 aa27.45■■□□□ 1.98
SRSF6-202ENST00000483871 RB1CC1Q8TDY2 1594 aa27.43■■□□□ 1.98
SRSF6-202ENST00000483871 SCRIBQ14160 1630 aa26.94■■□□□ 1.9
SRSF6-202ENST00000483871 UNC13AQ9UPW8 1703 aa26.87■■□□□ 1.89
SRSF6-202ENST00000483871 SHROOM4Q9ULL8 1493 aa26.81■■□□□ 1.88
SRSF6-202ENST00000483871 PABPN1Q86U42 306 aaKnown RBP eCLIP26.72■■□□□ 1.877e-10■■■□□ 17.9
SRSF6-202ENST00000483871 BICRAQ9NZM4 1560 aa26.64■■□□□ 1.85
SRSF6-202ENST00000483871 CECR2Q9BXF3 1484 aa26.02■■□□□ 1.76
SRSF6-202ENST00000483871 EIF4G1Q04637 1599 aaKnown RBP25.89■■□□□ 1.73
SRSF6-202ENST00000483871 BAZ1AQ9NRL2 1556 aaPredicted RBP25.78■■□□□ 1.72
SRSF6-202ENST00000483871 MROH2BQ7Z745 1585 aa25.76■■□□□ 1.71
SRSF6-202ENST00000483871 SMARCA4P51532 1647 aa25.76■■□□□ 1.71
SRSF6-202ENST00000483871 DNAJC5BQ9UF47 199 aa25.74■■□□□ 1.71
SRSF6-202ENST00000483871 CC2D2AQ9P2K1 1620 aa25.68■■□□□ 1.7
SRSF6-202ENST00000483871 RSF1Q96T23 1441 aaPredicted RBP25.64■■□□□ 1.7
SRSF6-202ENST00000483871 ATAD2BQ9ULI0 1458 aa25.53■■□□□ 1.68
SRSF6-202ENST00000483871 WIZO95785 1651 aa25.51■■□□□ 1.67
SRSF6-202ENST00000483871 SUPT5HO00267 1087 aaKnown RBP25.48■■□□□ 1.67
SRSF6-202ENST00000483871 SMARCA2P51531 1590 aa25.46■■□□□ 1.67
SRSF6-202ENST00000483871 PEG3Q9GZU2 1588 aa25.46■■□□□ 1.67
SRSF6-202ENST00000483871 NCAPD3P42695 1498 aa25.42■■□□□ 1.66
SRSF6-202ENST00000483871 BAZ1BQ9UIG0 1483 aaKnown RBP25.33■■□□□ 1.65
SRSF6-202ENST00000483871 HMGXB3Q12766 1538 aa25.28■■□□□ 1.64
SRSF6-202ENST00000483871 TOP2AP11388 1531 aaKnown RBP25.19■■□□□ 1.62
SRSF6-202ENST00000483871 CCDC88BA6NC98 1476 aa24.97■■□□□ 1.59
SRSF6-202ENST00000483871 NESP48681 1621 aa24.76■■□□□ 1.55
SRSF6-202ENST00000483871 CADPSQ9ULU8 1353 aa24.73■■□□□ 1.55
SRSF6-202ENST00000483871 CFTRP13569 1480 aa24.67■■□□□ 1.54
SRSF6-202ENST00000483871 LAMC3Q9Y6N6 1575 aa24.64■■□□□ 1.53
SRSF6-202ENST00000483871 PDS5BQ9NTI5 1447 aa24.48■■□□□ 1.51
SRSF6-202ENST00000483871 FANCD2Q9BXW9 1451 aa24.44■■□□□ 1.5
SRSF6-202ENST00000483871 PRDM2Q13029 1718 aa24.43■■□□□ 1.5
SRSF6-202ENST00000483871 ERCC6Q03468 1493 aa24.41■■□□□ 1.5
SRSF6-202ENST00000483871 KIF21AQ7Z4S6 1674 aa24.41■■□□□ 1.5
SRSF6-202ENST00000483871 CEP164Q9UPV0 1460 aa24.35■■□□□ 1.49
SRSF6-202ENST00000483871 ABCC8Q09428 1581 aa24.24■■□□□ 1.47
SRSF6-202ENST00000483871 MRC2Q9UBG0 1479 aa24.2■■□□□ 1.46
SRSF6-202ENST00000483871 URB2Q14146 1524 aaKnown RBP24.18■■□□□ 1.46
SRSF6-202ENST00000483871 THOC2Q8NI27 1593 aaKnown RBP24.17■■□□□ 1.46
SRSF6-202ENST00000483871 WRNQ14191 1432 aaPredicted RBP eCLIP24.14■■□□□ 1.46
SRSF6-202ENST00000483871 CUX1P39880 1505 aa24.12■■□□□ 1.45
SRSF6-202ENST00000483871 TOPBP1Q92547 1522 aa24.1■■□□□ 1.45
SRSF6-202ENST00000483871 WDR62O43379 1518 aa24.09■■□□□ 1.45
SRSF6-202ENST00000483871 DNMBPQ6XZF7 1577 aa24.08■■□□□ 1.44
SRSF6-202ENST00000483871 SYNJ1O43426 1573 aa24.06■■□□□ 1.44
SRSF6-202ENST00000483871 CHIC1Q5VXU3 224 aa24.02■■□□□ 1.44
SRSF6-202ENST00000483871 TOP2BQ02880 1626 aa24■■□□□ 1.43
SRSF6-202ENST00000483871 TRIM41Q8WV44 630 aa23.98■■□□□ 1.43
SRSF6-202ENST00000483871 BIVM-ERCC5R4GMW8 1640 aa23.97■■□□□ 1.43
SRSF6-202ENST00000483871 FGD5Q6ZNL6 1462 aa23.96■■□□□ 1.43
SRSF6-202ENST00000483871 POLA1P09884 1462 aaPredicted RBP23.94■■□□□ 1.42
SRSF6-202ENST00000483871 CUX2O14529 1486 aa23.91■■□□□ 1.42
SRSF6-202ENST00000483871 RAD54L2Q9Y4B4 1467 aa23.89■■□□□ 1.42
SRSF6-202ENST00000483871 SOGA1O94964 1423 aa23.88■■□□□ 1.41
SRSF6-202ENST00000483871 IFT140Q96RY7 1462 aa23.8■■□□□ 1.4
SRSF6-202ENST00000483871 TARBP1Q13395 1621 aaKnown RBP23.79■■□□□ 1.4
SRSF6-202ENST00000483871 ZNF608Q9ULD9 1512 aaPredicted RBP23.74■■□□□ 1.39
SRSF6-202ENST00000483871 TDRD9Q8NDG6 1382 aaKnown RBP23.73■■□□□ 1.39
SRSF6-202ENST00000483871 ABCA10Q8WWZ4 1543 aa23.71■■□□□ 1.39
SRSF6-202ENST00000483871 AQRO60306 1485 aaKnown RBP eCLIP23.69■■□□□ 1.385e-8■■■■■ 28.1
SRSF6-202ENST00000483871 WDR97A6NE52 1622 aa23.67■■□□□ 1.38
SRSF6-202ENST00000483871 RUSC2Q8N2Y8 1516 aa23.63■■□□□ 1.37
SRSF6-202ENST00000483871 EIF4G3O43432 1585 aaKnown RBP23.59■■□□□ 1.37
SRSF6-202ENST00000483871 GAPVD1Q14C86 1478 aa23.58■■□□□ 1.37
SRSF6-202ENST00000483871 KIF27Q86VH2 1401 aa23.58■■□□□ 1.37
SRSF6-202ENST00000483871 FAM9AQ8IZU1 332 aaPredicted RBP23.57■■□□□ 1.36
SRSF6-202ENST00000483871 ABCA5Q8WWZ7 1642 aa23.56■■□□□ 1.36
SRSF6-202ENST00000483871 GRIN2BQ13224 1484 aa23.49■■□□□ 1.35
SRSF6-202ENST00000483871 IGF1RP08069 1367 aa23.48■■□□□ 1.35
SRSF6-202ENST00000483871 PBRM1Q86U86 1689 aa23.46■■□□□ 1.35
SRSF6-202ENST00000483871 SNAPC4Q5SXM2 1469 aa23.42■■□□□ 1.34
SRSF6-202ENST00000483871 CSRNP3Q8WYN3 585 aa23.42■■□□□ 1.34
SRSF6-202ENST00000483871 ERICH3Q5RHP9 1530 aa23.41■■□□□ 1.34
SRSF6-202ENST00000483871 EEA1Q15075 1411 aa23.39■■□□□ 1.34
SRSF6-202ENST00000483871 FBLN2P98095 1184 aa23.35■■□□□ 1.33
SRSF6-202ENST00000483871 MAGI1Q96QZ7 1491 aaPredicted RBP23.35■■□□□ 1.33
SRSF6-202ENST00000483871 CARMIL1Q5VZK9 1371 aa23.34■■□□□ 1.33
SRSF6-202ENST00000483871 CHMP7Q8WUX9 453 aaPredicted RBP23.32■■□□□ 1.32
SRSF6-202ENST00000483871 FHAD1B1AJZ9 1412 aa23.31■■□□□ 1.32
SRSF6-202ENST00000483871 ADAMTS12P58397 1594 aa23.3■■□□□ 1.32
SRSF6-202ENST00000483871 EHMT2Q96KQ7 1210 aa23.28■■□□□ 1.32
SRSF6-202ENST00000483871 SYNJ2O15056 1496 aa23.27■■□□□ 1.32
SRSF6-202ENST00000483871 CUL7Q14999 1698 aa23.27■■□□□ 1.32
SRSF6-202ENST00000483871 PRXQ9BXM0 1461 aa23.25■■□□□ 1.31
SRSF6-202ENST00000483871 RAPGEF2Q9Y4G8 1499 aa23.22■■□□□ 1.31
SRSF6-202ENST00000483871 CHD1O14646 1710 aa23.21■■□□□ 1.31
SRSF6-202ENST00000483871 GRIN2AQ12879 1464 aa23.19■■□□□ 1.3
SRSF6-202ENST00000483871 KIF21BO75037 1637 aa23.13■■□□□ 1.29
SRSF6-202ENST00000483871 LOC105371045A0A1W2PR82 267 aa23.13■■□□□ 1.29
SRSF6-202ENST00000483871 OSCARQ8IYS5 282 aa23.12■■□□□ 1.29
SRSF6-202ENST00000483871 CEP170Q5SW79 1584 aa23.08■■□□□ 1.28
SRSF6-202ENST00000483871 UBTFP17480 764 aaKnown RBP23.07■■□□□ 1.28
SRSF6-202ENST00000483871 GOLGA3Q08378 1498 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms