RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 NISCHQ9Y2I1 1504 aa23.02■■□□□ 1.28
TPM3-223ENST00000611659 SHROOM4Q9ULL8 1493 aa20.43■□□□□ 0.86
TPM3-223ENST00000611659 SUPT5HO00267 1087 aaKnown RBP20.29■□□□□ 0.84
TPM3-223ENST00000611659 HRCP23327 699 aa20.02■□□□□ 0.8
TPM3-223ENST00000611659 PCGF6Q9BYE7 350 aa19.84■□□□□ 0.77
TPM3-223ENST00000611659 MYO15BQ96JP2 1530 aa19.79■□□□□ 0.76
TPM3-223ENST00000611659 CHIC1Q5VXU3 224 aa19.76■□□□□ 0.75
TPM3-223ENST00000611659 DCAF8L2P0C7V8 631 aa19.74■□□□□ 0.75
TPM3-223ENST00000611659 PPARGC1BQ86YN6 1023 aaKnown RBP19.71■□□□□ 0.75
TPM3-223ENST00000611659 ZCCHC6Q5VYS8 1495 aaKnown RBP19.53■□□□□ 0.72
TPM3-223ENST00000611659 LOC105371045A0A1W2PR82 267 aa19.36■□□□□ 0.69
TPM3-223ENST00000611659 DCAF1Q9Y4B6 1507 aa19.26■□□□□ 0.67
TPM3-223ENST00000611659 TRIM26Q12899 539 aaPredicted RBP19.18■□□□□ 0.66
TPM3-223ENST00000611659 CCDC180Q9P1Z9 1646 aa19.13■□□□□ 0.65
TPM3-223ENST00000611659 PELP1Q8IZL8 1130 aaKnown RBP18.93■□□□□ 0.62
TPM3-223ENST00000611659 ZEB1P37275 1124 aaPredicted RBP18.92■□□□□ 0.62
TPM3-223ENST00000611659 SCAF1Q9H7N4 1312 aaKnown RBP18.83■□□□□ 0.61
TPM3-223ENST00000611659 FAM9AQ8IZU1 332 aaPredicted RBP18.8■□□□□ 0.6
TPM3-223ENST00000611659 EHMT2Q96KQ7 1210 aa18.79■□□□□ 0.6
TPM3-223ENST00000611659 TRIM41Q8WV44 630 aa18.75■□□□□ 0.59
TPM3-223ENST00000611659 ABCC9O60706 1549 aa18.51■□□□□ 0.55
TPM3-223ENST00000611659 RSF1Q96T23 1441 aaPredicted RBP18.49■□□□□ 0.55
TPM3-223ENST00000611659 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.47■□□□□ 0.55
TPM3-223ENST00000611659 ACIN1Q9UKV3 1341 aaKnown RBP18.44■□□□□ 0.54
TPM3-223ENST00000611659 CCER1Q8TC90 406 aaPredicted RBP18.44■□□□□ 0.54
TPM3-223ENST00000611659 NEUROD1Q13562 356 aa18.43■□□□□ 0.54
TPM3-223ENST00000611659 RB1CC1Q8TDY2 1594 aa18.39■□□□□ 0.53
TPM3-223ENST00000611659 SCRIBQ14160 1630 aa18.37■□□□□ 0.53
TPM3-223ENST00000611659 GTF3C3Q9Y5Q9 886 aa18.34■□□□□ 0.53
TPM3-223ENST00000611659 DIEXFQ68CQ4 756 aaKnown RBP18.31■□□□□ 0.52
TPM3-223ENST00000611659 CENPBP07199 599 aaPredicted RBP18.29■□□□□ 0.52
TPM3-223ENST00000611659 TTBK1Q5TCY1 1321 aaPredicted RBP18.29■□□□□ 0.52
TPM3-223ENST00000611659 MYT1Q01538 1121 aa18.09■□□□□ 0.49
TPM3-223ENST00000611659 YTHDC1Q96MU7 727 aaKnown RBP18.09■□□□□ 0.49
TPM3-223ENST00000611659 CECR2Q9BXF3 1484 aa18.07■□□□□ 0.48
TPM3-223ENST00000611659 MROH2BQ7Z745 1585 aa18■□□□□ 0.47
TPM3-223ENST00000611659 ZNF316A6NFI3 1004 aaPredicted RBP17.98■□□□□ 0.47
TPM3-223ENST00000611659 WIZO95785 1651 aa17.93■□□□□ 0.46
TPM3-223ENST00000611659 CEP162Q5TB80 1403 aa17.88■□□□□ 0.45
TPM3-223ENST00000611659 UBTFP17480 764 aaKnown RBP17.85■□□□□ 0.45
TPM3-223ENST00000611659 MIER1Q8N108 512 aa17.85■□□□□ 0.45
TPM3-223ENST00000611659 WRNQ14191 1432 aaPredicted RBP eCLIP17.84■□□□□ 0.459e-7■■■□□ 18.8
TPM3-223ENST00000611659 CCDC88BA6NC98 1476 aa17.81■□□□□ 0.44
TPM3-223ENST00000611659 ABCC8Q09428 1581 aa17.8■□□□□ 0.44
TPM3-223ENST00000611659 HNRNPUL2Q1KMD3 747 aaKnown RBP17.8■□□□□ 0.44
TPM3-223ENST00000611659 SOGA1O94964 1423 aa17.76■□□□□ 0.43
TPM3-223ENST00000611659 NACADO15069 1562 aa17.76■□□□□ 0.43
TPM3-223ENST00000611659 TNIKQ9UKE5 1360 aa17.74■□□□□ 0.43
TPM3-223ENST00000611659 BAZ1AQ9NRL2 1556 aaPredicted RBP17.73■□□□□ 0.43
TPM3-223ENST00000611659 EIF4G1Q04637 1599 aaKnown RBP17.72■□□□□ 0.43
TPM3-223ENST00000611659 CSRNP3Q8WYN3 585 aa17.72■□□□□ 0.43
TPM3-223ENST00000611659 PABPN1Q86U42 306 aaKnown RBP eCLIP17.68■□□□□ 0.42
TPM3-223ENST00000611659 RUSC2Q8N2Y8 1516 aa17.65■□□□□ 0.42
TPM3-223ENST00000611659 RANGAP1P46060 587 aaPredicted RBP17.57■□□□□ 0.4
TPM3-223ENST00000611659 GOLGA3Q08378 1498 aa17.56■□□□□ 0.4
TPM3-223ENST00000611659 APLP2Q06481 763 aa17.55■□□□□ 0.4
TPM3-223ENST00000611659 EEA1Q15075 1411 aa17.55■□□□□ 0.4
TPM3-223ENST00000611659 TOP2AP11388 1531 aaKnown RBP17.55■□□□□ 0.4
TPM3-223ENST00000611659 SMARCA2P51531 1590 aa17.5■□□□□ 0.39
TPM3-223ENST00000611659 SUPT16HQ9Y5B9 1047 aaKnown RBP17.47■□□□□ 0.39
TPM3-223ENST00000611659 CLIP1P30622 1438 aa17.45■□□□□ 0.38
TPM3-223ENST00000611659 SMARCA4P51532 1647 aa17.41■□□□□ 0.38
TPM3-223ENST00000611659 CEP164Q9UPV0 1460 aa17.38■□□□□ 0.37
TPM3-223ENST00000611659 VPS8Q8N3P4 1428 aa17.37■□□□□ 0.37
TPM3-223ENST00000611659 CLSPNQ9HAW4 1339 aa17.35■□□□□ 0.37
TPM3-223ENST00000611659 TSHZ2Q9NRE2 1034 aa17.32■□□□□ 0.36
TPM3-223ENST00000611659 DHX57Q6P158 1386 aaKnown RBP17.29■□□□□ 0.36
TPM3-223ENST00000611659 RAPGEF2Q9Y4G8 1499 aa17.26■□□□□ 0.35
TPM3-223ENST00000611659 BCANQ96GW7 911 aa17.25■□□□□ 0.35
TPM3-223ENST00000611659 KIF21BO75037 1637 aa17.25■□□□□ 0.35
TPM3-223ENST00000611659 ANP32EQ9BTT0 268 aa17.24■□□□□ 0.35
TPM3-223ENST00000611659 SYNJ1O43426 1573 aa17.23■□□□□ 0.35
TPM3-223ENST00000611659 KCNH8Q96L42 1107 aa17.22■□□□□ 0.35
TPM3-223ENST00000611659 ITGAEP38570 1179 aa17.21■□□□□ 0.35
TPM3-223ENST00000611659 KANK4Q5T7N3 995 aaPredicted RBP17.19■□□□□ 0.34
TPM3-223ENST00000611659 UNC13AQ9UPW8 1703 aa17.19■□□□□ 0.34
TPM3-223ENST00000611659 BAZ1BQ9UIG0 1483 aaKnown RBP17.17■□□□□ 0.34
TPM3-223ENST00000611659 FKBP8Q14318 412 aa17.12■□□□□ 0.33
TPM3-223ENST00000611659 BICRAQ9NZM4 1560 aa17.08■□□□□ 0.32
TPM3-223ENST00000611659 DDX10Q13206 875 aaKnown RBP17.05■□□□□ 0.32
TPM3-223ENST00000611659 BCL11AQ9H165 835 aa17.05■□□□□ 0.32
TPM3-223ENST00000611659 ARAP1Q96P48 1450 aa17.02■□□□□ 0.32
TPM3-223ENST00000611659 NEFLP07196 543 aa17.01■□□□□ 0.31
TPM3-223ENST00000611659 CCNB3Q8WWL7 1395 aa17.01■□□□□ 0.31
TPM3-223ENST00000611659 ATAD2BQ9ULI0 1458 aa17■□□□□ 0.31
TPM3-223ENST00000611659 RRBP1Q9P2E9 1410 aaKnown RBP16.99■□□□□ 0.31
TPM3-223ENST00000611659 TRIM52Q96A61 297 aa16.97■□□□□ 0.31
TPM3-223ENST00000611659 HIRIP3Q9BW71 556 aaPredicted RBP16.96■□□□□ 0.31
TPM3-223ENST00000611659 RBM19Q9Y4C8 960 aaKnown RBP16.96■□□□□ 0.31
TPM3-223ENST00000611659 RAB3GAP2Q9H2M9 1393 aa16.96■□□□□ 0.31
TPM3-223ENST00000611659 SIN3AQ96ST3 1273 aa16.94■□□□□ 0.3
TPM3-223ENST00000611659 PRXQ9BXM0 1461 aa16.91■□□□□ 0.3
TPM3-223ENST00000611659 PEG3Q9GZU2 1588 aa16.91■□□□□ 0.3
TPM3-223ENST00000611659 CUX2O14529 1486 aa16.89■□□□□ 0.29
TPM3-223ENST00000611659 TOP2BQ02880 1626 aa16.89■□□□□ 0.29
TPM3-223ENST00000611659 ERICH3Q5RHP9 1530 aa16.89■□□□□ 0.29
TPM3-223ENST00000611659 FAM50AQ14320 339 aaKnown RBP16.87■□□□□ 0.29
TPM3-223ENST00000611659 MAPKBP1O60336 1514 aa16.86■□□□□ 0.29
TPM3-223ENST00000611659 ANP32CO43423 234 aa16.86■□□□□ 0.29
TPM3-223ENST00000611659 WDR97A6NE52 1622 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms