RNA–Protein interactions for RNA: ENST00000343420.6

CD55-202, Transcript of CD55 molecule (Cromer blood group), humanhuman

TSL 5

Gene CD55, Length 978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD55-202ENST00000343420 NISCHQ9Y2I1 1504 aa41.82■■■■■ 4.29
CD55-202ENST00000343420 CCDC180Q9P1Z9 1646 aa37.39■■■■□ 3.58
CD55-202ENST00000343420 ABCC9O60706 1549 aa36.95■■■■□ 3.5
CD55-202ENST00000343420 RB1CC1Q8TDY2 1594 aa35.38■■■■□ 3.25
CD55-202ENST00000343420 NACADO15069 1562 aa35.25■■■■□ 3.23
CD55-202ENST00000343420 DCAF8L2P0C7V8 631 aa35.09■■■■□ 3.21
CD55-202ENST00000343420 MYO15BQ96JP2 1530 aa34.89■■■■□ 3.18
CD55-202ENST00000343420 ZCCHC6Q5VYS8 1495 aaKnown RBP34.74■■■■□ 3.15
CD55-202ENST00000343420 UNC13AQ9UPW8 1703 aa34.61■■■■□ 3.13
CD55-202ENST00000343420 DCAF1Q9Y4B6 1507 aa34.59■■■■□ 3.13
CD55-202ENST00000343420 PABPN1Q86U42 306 aaKnown RBP eCLIP34.44■■■■□ 3.1
CD55-202ENST00000343420 BICRAQ9NZM4 1560 aa34.32■■■■□ 3.08
CD55-202ENST00000343420 DNAJC5BQ9UF47 199 aa34.28■■■■□ 3.08
CD55-202ENST00000343420 SCRIBQ14160 1630 aa34.05■■■■□ 3.04
CD55-202ENST00000343420 SHROOM4Q9ULL8 1493 aa33.93■■■■□ 3.02
CD55-202ENST00000343420 EIF4G1Q04637 1599 aaKnown RBP33.45■■■□□ 2.95
CD55-202ENST00000343420 CC2D2AQ9P2K1 1620 aa33.42■■■□□ 2.94
CD55-202ENST00000343420 CECR2Q9BXF3 1484 aa33.25■■■□□ 2.91
CD55-202ENST00000343420 SMARCA4P51532 1647 aa32.54■■■□□ 2.8
CD55-202ENST00000343420 NCAPD3P42695 1498 aa32.51■■■□□ 2.79
CD55-202ENST00000343420 ATAD2BQ9ULI0 1458 aa32.46■■■□□ 2.79
CD55-202ENST00000343420 BAZ1AQ9NRL2 1556 aaPredicted RBP32.44■■■□□ 2.78
CD55-202ENST00000343420 SMARCA2P51531 1590 aa32.41■■■□□ 2.78
CD55-202ENST00000343420 HMGXB3Q12766 1538 aa32.32■■■□□ 2.76
CD55-202ENST00000343420 PEG3Q9GZU2 1588 aa32.24■■■□□ 2.75
CD55-202ENST00000343420 MROH2BQ7Z745 1585 aa32.2■■■□□ 2.75
CD55-202ENST00000343420 BAZ1BQ9UIG0 1483 aaKnown RBP32.16■■■□□ 2.74
CD55-202ENST00000343420 ERCC6Q03468 1493 aa31.89■■■□□ 2.7
CD55-202ENST00000343420 WIZO95785 1651 aa31.86■■■□□ 2.69
CD55-202ENST00000343420 NESP48681 1621 aa31.85■■■□□ 2.69
CD55-202ENST00000343420 LAMC3Q9Y6N6 1575 aa31.73■■■□□ 2.67
CD55-202ENST00000343420 CUX2O14529 1486 aa31.71■■■□□ 2.67
CD55-202ENST00000343420 RSF1Q96T23 1441 aaPredicted RBP31.68■■■□□ 2.66
CD55-202ENST00000343420 CADPSQ9ULU8 1353 aa31.54■■■□□ 2.64
CD55-202ENST00000343420 PDS5BQ9NTI5 1447 aa31.52■■■□□ 2.64
CD55-202ENST00000343420 KIF21AQ7Z4S6 1674 aa31.5■■■□□ 2.63
CD55-202ENST00000343420 TOP2AP11388 1531 aaKnown RBP31.49■■■□□ 2.63
CD55-202ENST00000343420 THOC2Q8NI27 1593 aaKnown RBP31.47■■■□□ 2.63
CD55-202ENST00000343420 CFTRP13569 1480 aa31.27■■■□□ 2.6
CD55-202ENST00000343420 DNAJC5Q9H3Z4 198 aa31.23■■■□□ 2.59
CD55-202ENST00000343420 MRC2Q9UBG0 1479 aa31.22■■■□□ 2.59
CD55-202ENST00000343420 CEP164Q9UPV0 1460 aa31.18■■■□□ 2.58
CD55-202ENST00000343420 FANCD2Q9BXW9 1451 aa31.17■■■□□ 2.58
CD55-202ENST00000343420 WDR62O43379 1518 aa31.14■■■□□ 2.57
CD55-202ENST00000343420 CCDC88BA6NC98 1476 aa31.11■■■□□ 2.57
CD55-202ENST00000343420 PRDM2Q13029 1718 aa31.06■■■□□ 2.56
CD55-202ENST00000343420 URB2Q14146 1524 aaKnown RBP30.88■■■□□ 2.53
CD55-202ENST00000343420 TOPBP1Q92547 1522 aa30.63■■■□□ 2.49
CD55-202ENST00000343420 ABCC8Q09428 1581 aa30.62■■■□□ 2.49
CD55-202ENST00000343420 DNMBPQ6XZF7 1577 aa30.57■■■□□ 2.48
CD55-202ENST00000343420 SUPT5HO00267 1087 aaKnown RBP30.56■■■□□ 2.48
CD55-202ENST00000343420 IFT140Q96RY7 1462 aa30.55■■■□□ 2.48
CD55-202ENST00000343420 ZNF608Q9ULD9 1512 aaPredicted RBP30.43■■■□□ 2.46
CD55-202ENST00000343420 TARBP1Q13395 1621 aaKnown RBP30.34■■■□□ 2.45
CD55-202ENST00000343420 POLA1P09884 1462 aaPredicted RBP30.34■■■□□ 2.45
CD55-202ENST00000343420 OSCARQ8IYS5 282 aa30.32■■■□□ 2.44
CD55-202ENST00000343420 EIF4G3O43432 1585 aaKnown RBP30.31■■■□□ 2.44
CD55-202ENST00000343420 CUX1P39880 1505 aa30.24■■■□□ 2.43
CD55-202ENST00000343420 AQRO60306 1485 aaKnown RBP eCLIP30.21■■■□□ 2.434e-7■■■■■ 30.5
CD55-202ENST00000343420 RAD54L2Q9Y4B4 1467 aa30.21■■■□□ 2.43
CD55-202ENST00000343420 SOGA1O94964 1423 aa30.21■■■□□ 2.43
CD55-202ENST00000343420 FGD5Q6ZNL6 1462 aa30.2■■■□□ 2.43
CD55-202ENST00000343420 WDR97A6NE52 1622 aa30.1■■■□□ 2.41
CD55-202ENST00000343420 TDRD9Q8NDG6 1382 aaKnown RBP30.08■■■□□ 2.41
CD55-202ENST00000343420 CHD1O14646 1710 aa30.03■■■□□ 2.4
CD55-202ENST00000343420 TRIM41Q8WV44 630 aa30■■■□□ 2.39
CD55-202ENST00000343420 FBLN2P98095 1184 aa29.93■■■□□ 2.38
CD55-202ENST00000343420 SNAPC4Q5SXM2 1469 aa29.92■■■□□ 2.38
CD55-202ENST00000343420 GRIN2BQ13224 1484 aa29.91■■■□□ 2.38
CD55-202ENST00000343420 ABCA10Q8WWZ4 1543 aa29.9■■■□□ 2.38
CD55-202ENST00000343420 BIVM-ERCC5R4GMW8 1640 aa29.89■■■□□ 2.38
CD55-202ENST00000343420 WRNQ14191 1432 aaPredicted RBP eCLIP29.89■■■□□ 2.38
CD55-202ENST00000343420 RIMBP3CA6NJZ7 1639 aa29.89■■■□□ 2.37
CD55-202ENST00000343420 RIMBP3BA6NNM3 1639 aa29.89■■■□□ 2.37
CD55-202ENST00000343420 TOP2BQ02880 1626 aa29.89■■■□□ 2.37
CD55-202ENST00000343420 RIMBP3Q9UFD9 1639 aa29.89■■■□□ 2.37
CD55-202ENST00000343420 MAGI1Q96QZ7 1491 aaPredicted RBP29.88■■■□□ 2.37
CD55-202ENST00000343420 GAPVD1Q14C86 1478 aa29.86■■■□□ 2.37
CD55-202ENST00000343420 PBRM1Q86U86 1689 aa29.85■■■□□ 2.37
CD55-202ENST00000343420 SYNJ1O43426 1573 aa29.85■■■□□ 2.37
CD55-202ENST00000343420 ARHGEF11O15085 1522 aa29.83■■■□□ 2.37
CD55-202ENST00000343420 ABCA5Q8WWZ7 1642 aa29.82■■■□□ 2.36
CD55-202ENST00000343420 CHMP7Q8WUX9 453 aaPredicted RBP29.79■■■□□ 2.36
CD55-202ENST00000343420 SYNJ2O15056 1496 aa29.77■■■□□ 2.36
CD55-202ENST00000343420 CLASP1Q7Z460 1538 aa29.67■■■□□ 2.34
CD55-202ENST00000343420 CYB5RLQ6IPT4 315 aa29.57■■■□□ 2.32
CD55-202ENST00000343420 ADAMTS12P58397 1594 aa29.56■■■□□ 2.32
CD55-202ENST00000343420 ARAP1Q96P48 1450 aa29.55■■■□□ 2.32
CD55-202ENST00000343420 ERICH3Q5RHP9 1530 aa29.55■■■□□ 2.32
CD55-202ENST00000343420 GRIN2AQ12879 1464 aa29.52■■■□□ 2.32
CD55-202ENST00000343420 FHAD1B1AJZ9 1412 aa29.5■■■□□ 2.31
CD55-202ENST00000343420 NUP160Q12769 1436 aa29.41■■■□□ 2.3
CD55-202ENST00000343420 CEP170Q5SW79 1584 aa29.39■■■□□ 2.3
CD55-202ENST00000343420 KIF27Q86VH2 1401 aa29.3■■■□□ 2.28
CD55-202ENST00000343420 SHROOM2Q13796 1616 aa29.26■■■□□ 2.27
CD55-202ENST00000343420 IGF1RP08069 1367 aa29.24■■■□□ 2.27
CD55-202ENST00000343420 ERCC6L2Q5T890 1561 aa29.22■■■□□ 2.27
CD55-202ENST00000343420 CUL7Q14999 1698 aa29.21■■■□□ 2.27
CD55-202ENST00000343420 RUSC2Q8N2Y8 1516 aa29.14■■■□□ 2.25
CD55-202ENST00000343420 TRHP20396 242 aaPredicted RBP29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms