RNA–Protein interactions for RNA: ENST00000460616.5

SSR4-206, Transcript of signal sequence receptor subunit 4, humanhuman

TSL 2

Gene SSR4, Length 2,482 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR4-206ENST00000460616 NISCHQ9Y2I1 1504 aa32.1■■■□□ 2.73
SSR4-206ENST00000460616 CCDC180Q9P1Z9 1646 aa28.19■■■□□ 2.1
SSR4-206ENST00000460616 ABCC9O60706 1549 aa27.1■■□□□ 1.93
SSR4-206ENST00000460616 ZCCHC6Q5VYS8 1495 aaKnown RBP26.89■■□□□ 1.89
SSR4-206ENST00000460616 DCAF8L2P0C7V8 631 aa26.67■■□□□ 1.86
SSR4-206ENST00000460616 DCAF1Q9Y4B6 1507 aa26.46■■□□□ 1.83
SSR4-206ENST00000460616 NACADO15069 1562 aa26.31■■□□□ 1.8
SSR4-206ENST00000460616 MYO15BQ96JP2 1530 aa26.28■■□□□ 1.8
SSR4-206ENST00000460616 RB1CC1Q8TDY2 1594 aa26.21■■□□□ 1.79
SSR4-206ENST00000460616 HRCP23327 699 aa26.07■■□□□ 1.76
SSR4-206ENST00000460616 SHROOM4Q9ULL8 1493 aa25.99■■□□□ 1.75
SSR4-206ENST00000460616 SCRIBQ14160 1630 aa25.95■■□□□ 1.75
SSR4-206ENST00000460616 SUPT5HO00267 1087 aaKnown RBP25.86■■□□□ 1.73
SSR4-206ENST00000460616 UNC13AQ9UPW8 1703 aa25.83■■□□□ 1.73
SSR4-206ENST00000460616 PCGF6Q9BYE7 350 aa25.57■■□□□ 1.68
SSR4-206ENST00000460616 BICRAQ9NZM4 1560 aa25.51■■□□□ 1.67
SSR4-206ENST00000460616 PABPN1Q86U42 306 aaKnown RBP eCLIP25.46■■□□□ 1.67
SSR4-206ENST00000460616 CHIC1Q5VXU3 224 aa25.45■■□□□ 1.67
SSR4-206ENST00000460616 PPARGC1BQ86YN6 1023 aaKnown RBP25.45■■□□□ 1.66
SSR4-206ENST00000460616 CECR2Q9BXF3 1484 aa25.04■■□□□ 1.6
SSR4-206ENST00000460616 PELP1Q8IZL8 1130 aaKnown RBP25.04■■□□□ 1.6
SSR4-206ENST00000460616 TRIM26Q12899 539 aaPredicted RBP24.84■■□□□ 1.57
SSR4-206ENST00000460616 MROH2BQ7Z745 1585 aa24.84■■□□□ 1.57
SSR4-206ENST00000460616 LOC105371045A0A1W2PR82 267 aa24.83■■□□□ 1.56
SSR4-206ENST00000460616 SMARCA4P51532 1647 aa24.81■■□□□ 1.56
SSR4-206ENST00000460616 BAZ1AQ9NRL2 1556 aaPredicted RBP24.8■■□□□ 1.56
SSR4-206ENST00000460616 EIF4G1Q04637 1599 aaKnown RBP24.75■■□□□ 1.55
SSR4-206ENST00000460616 RSF1Q96T23 1441 aaPredicted RBP24.74■■□□□ 1.55
SSR4-206ENST00000460616 WIZO95785 1651 aa24.65■■□□□ 1.54
SSR4-206ENST00000460616 ZEB1P37275 1124 aaPredicted RBP24.64■■□□□ 1.54
SSR4-206ENST00000460616 SCAF1Q9H7N4 1312 aaKnown RBP24.56■■□□□ 1.52
SSR4-206ENST00000460616 CC2D2AQ9P2K1 1620 aa24.51■■□□□ 1.51
SSR4-206ENST00000460616 PEG3Q9GZU2 1588 aa24.46■■□□□ 1.51
SSR4-206ENST00000460616 ATAD2BQ9ULI0 1458 aa24.46■■□□□ 1.51
SSR4-206ENST00000460616 SMARCA2P51531 1590 aa24.4■■□□□ 1.5
SSR4-206ENST00000460616 DNAJC5BQ9UF47 199 aa24.31■■□□□ 1.48
SSR4-206ENST00000460616 TOP2AP11388 1531 aaKnown RBP24.3■■□□□ 1.48
SSR4-206ENST00000460616 BAZ1BQ9UIG0 1483 aaKnown RBP24.3■■□□□ 1.48
SSR4-206ENST00000460616 NCAPD3P42695 1498 aa24.28■■□□□ 1.48
SSR4-206ENST00000460616 HMGXB3Q12766 1538 aa24.24■■□□□ 1.47
SSR4-206ENST00000460616 MYT1Q01538 1121 aa24.05■■□□□ 1.44
SSR4-206ENST00000460616 CCDC88BA6NC98 1476 aa24.05■■□□□ 1.44
SSR4-206ENST00000460616 ACIN1Q9UKV3 1341 aaKnown RBP24.04■■□□□ 1.44
SSR4-206ENST00000460616 TRIM41Q8WV44 630 aa23.99■■□□□ 1.43
SSR4-206ENST00000460616 NEUROD1Q13562 356 aa23.94■■□□□ 1.42
SSR4-206ENST00000460616 FAM9AQ8IZU1 332 aaPredicted RBP23.89■■□□□ 1.42
SSR4-206ENST00000460616 GTF3C3Q9Y5Q9 886 aa23.82■■□□□ 1.4
SSR4-206ENST00000460616 CENPBP07199 599 aaPredicted RBP23.78■■□□□ 1.4
SSR4-206ENST00000460616 EHMT2Q96KQ7 1210 aa23.73■■□□□ 1.39
SSR4-206ENST00000460616 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.73■■□□□ 1.39
SSR4-206ENST00000460616 CCER1Q8TC90 406 aaPredicted RBP23.72■■□□□ 1.39
SSR4-206ENST00000460616 DIEXFQ68CQ4 756 aaKnown RBP23.7■■□□□ 1.38
SSR4-206ENST00000460616 NESP48681 1621 aa23.69■■□□□ 1.38
SSR4-206ENST00000460616 CFTRP13569 1480 aa23.65■■□□□ 1.38
SSR4-206ENST00000460616 CADPSQ9ULU8 1353 aa23.63■■□□□ 1.37
SSR4-206ENST00000460616 PRDM2Q13029 1718 aa23.59■■□□□ 1.37
SSR4-206ENST00000460616 LAMC3Q9Y6N6 1575 aa23.55■■□□□ 1.36
SSR4-206ENST00000460616 ABCC8Q09428 1581 aa23.5■■□□□ 1.35
SSR4-206ENST00000460616 KIF21AQ7Z4S6 1674 aa23.43■■□□□ 1.34
SSR4-206ENST00000460616 FANCD2Q9BXW9 1451 aa23.41■■□□□ 1.34
SSR4-206ENST00000460616 PDS5BQ9NTI5 1447 aa23.33■■□□□ 1.33
SSR4-206ENST00000460616 CEP164Q9UPV0 1460 aa23.3■■□□□ 1.32
SSR4-206ENST00000460616 SYNJ1O43426 1573 aa23.3■■□□□ 1.32
SSR4-206ENST00000460616 ZNF316A6NFI3 1004 aaPredicted RBP23.29■■□□□ 1.32
SSR4-206ENST00000460616 WRNQ14191 1432 aaPredicted RBP eCLIP23.29■■□□□ 1.32
SSR4-206ENST00000460616 CUX1P39880 1505 aa23.24■■□□□ 1.31
SSR4-206ENST00000460616 YTHDC1Q96MU7 727 aaKnown RBP23.24■■□□□ 1.31
SSR4-206ENST00000460616 ERCC6Q03468 1493 aa23.23■■□□□ 1.31
SSR4-206ENST00000460616 URB2Q14146 1524 aaKnown RBP23.18■■□□□ 1.3
SSR4-206ENST00000460616 TOP2BQ02880 1626 aa23.17■■□□□ 1.3
SSR4-206ENST00000460616 BIVM-ERCC5R4GMW8 1640 aa23.17■■□□□ 1.3
SSR4-206ENST00000460616 TTBK1Q5TCY1 1321 aaPredicted RBP23.16■■□□□ 1.3
SSR4-206ENST00000460616 TOPBP1Q92547 1522 aa23.13■■□□□ 1.29
SSR4-206ENST00000460616 DNMBPQ6XZF7 1577 aa23.13■■□□□ 1.29
SSR4-206ENST00000460616 THOC2Q8NI27 1593 aaKnown RBP23.12■■□□□ 1.29
SSR4-206ENST00000460616 MRC2Q9UBG0 1479 aa23.11■■□□□ 1.29
SSR4-206ENST00000460616 MIER1Q8N108 512 aa23.08■■□□□ 1.29
SSR4-206ENST00000460616 FGD5Q6ZNL6 1462 aa23.04■■□□□ 1.28
SSR4-206ENST00000460616 WDR62O43379 1518 aa23.03■■□□□ 1.28
SSR4-206ENST00000460616 POLA1P09884 1462 aaPredicted RBP22.99■■□□□ 1.27
SSR4-206ENST00000460616 CEP162Q5TB80 1403 aa22.97■■□□□ 1.27
SSR4-206ENST00000460616 RAD54L2Q9Y4B4 1467 aa22.95■■□□□ 1.26
SSR4-206ENST00000460616 SOGA1O94964 1423 aa22.92■■□□□ 1.26
SSR4-206ENST00000460616 RUSC2Q8N2Y8 1516 aa22.9■■□□□ 1.26
SSR4-206ENST00000460616 CUX2O14529 1486 aa22.88■■□□□ 1.25
SSR4-206ENST00000460616 TNIKQ9UKE5 1360 aa22.87■■□□□ 1.25
SSR4-206ENST00000460616 TARBP1Q13395 1621 aaKnown RBP22.85■■□□□ 1.25
SSR4-206ENST00000460616 WDR97A6NE52 1622 aa22.84■■□□□ 1.25
SSR4-206ENST00000460616 ABCA10Q8WWZ4 1543 aa22.78■■□□□ 1.24
SSR4-206ENST00000460616 UBTFP17480 764 aaKnown RBP22.76■■□□□ 1.23
SSR4-206ENST00000460616 CLSPNQ9HAW4 1339 aa22.75■■□□□ 1.23
SSR4-206ENST00000460616 HNRNPUL2Q1KMD3 747 aaKnown RBP22.75■■□□□ 1.23
SSR4-206ENST00000460616 TDRD9Q8NDG6 1382 aaKnown RBP22.73■■□□□ 1.23
SSR4-206ENST00000460616 IFT140Q96RY7 1462 aa22.73■■□□□ 1.23
SSR4-206ENST00000460616 ZNF608Q9ULD9 1512 aaPredicted RBP22.73■■□□□ 1.23
SSR4-206ENST00000460616 CSRNP3Q8WYN3 585 aa22.71■■□□□ 1.23
SSR4-206ENST00000460616 SUPT16HQ9Y5B9 1047 aaKnown RBP22.7■■□□□ 1.22
SSR4-206ENST00000460616 KIF27Q86VH2 1401 aa22.7■■□□□ 1.22
SSR4-206ENST00000460616 ABCA5Q8WWZ7 1642 aa22.69■■□□□ 1.22
SSR4-206ENST00000460616 AQRO60306 1485 aaKnown RBP eCLIP22.67■■□□□ 1.221e-7■■■■■ 36.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms