RNA–Protein interactions for RNA: ENST00000481238.1

TMED4-205, Transcript of transmembrane p24 trafficking protein 4, humanhuman

TSL 1 (best) BASIC

Gene TMED4, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMED4-205ENST00000481238 NISCHQ9Y2I1 1504 aa50.92■■■■■ 5.74
TMED4-205ENST00000481238 CCDC180Q9P1Z9 1646 aa44.22■■■■■ 4.67
TMED4-205ENST00000481238 ZCCHC6Q5VYS8 1495 aaKnown RBP42.8■■■■■ 4.44
TMED4-205ENST00000481238 DCAF1Q9Y4B6 1507 aa42.11■■■■■ 4.33
TMED4-205ENST00000481238 DCAF8L2P0C7V8 631 aa42.06■■■■■ 4.32
TMED4-205ENST00000481238 ABCC9O60706 1549 aa41.71■■■■■ 4.27
TMED4-205ENST00000481238 SHROOM4Q9ULL8 1493 aa41.68■■■■■ 4.26
TMED4-205ENST00000481238 MYO15BQ96JP2 1530 aa41.55■■■■■ 4.24
TMED4-205ENST00000481238 NACADO15069 1562 aa41.22■■■■■ 4.19
TMED4-205ENST00000481238 RB1CC1Q8TDY2 1594 aa40.79■■■■■ 4.12
TMED4-205ENST00000481238 SCRIBQ14160 1630 aa40.71■■■■■ 4.11
TMED4-205ENST00000481238 SUPT5HO00267 1087 aaKnown RBP40.25■■■■■ 4.03
TMED4-205ENST00000481238 UNC13AQ9UPW8 1703 aa39.88■■■■□ 3.98
TMED4-205ENST00000481238 RSF1Q96T23 1441 aaPredicted RBP39.62■■■■□ 3.93
TMED4-205ENST00000481238 CECR2Q9BXF3 1484 aa39.56■■■■□ 3.92
TMED4-205ENST00000481238 BICRAQ9NZM4 1560 aa39.56■■■■□ 3.92
TMED4-205ENST00000481238 PABPN1Q86U42 306 aaKnown RBP eCLIP39.45■■■■□ 3.91
TMED4-205ENST00000481238 MROH2BQ7Z745 1585 aa39.34■■■■□ 3.89
TMED4-205ENST00000481238 BAZ1AQ9NRL2 1556 aaPredicted RBP39.29■■■■□ 3.88
TMED4-205ENST00000481238 SMARCA4P51532 1647 aa39.06■■■■□ 3.84
TMED4-205ENST00000481238 WIZO95785 1651 aa38.99■■■■□ 3.83
TMED4-205ENST00000481238 CHIC1Q5VXU3 224 aa38.67■■■■□ 3.78
TMED4-205ENST00000481238 TOP2AP11388 1531 aaKnown RBP38.61■■■■□ 3.77
TMED4-205ENST00000481238 PEG3Q9GZU2 1588 aa38.6■■■■□ 3.77
TMED4-205ENST00000481238 ATAD2BQ9ULI0 1458 aa38.43■■■■□ 3.74
TMED4-205ENST00000481238 SMARCA2P51531 1590 aa38.38■■■■□ 3.73
TMED4-205ENST00000481238 EIF4G1Q04637 1599 aaKnown RBP38.35■■■■□ 3.73
TMED4-205ENST00000481238 CCDC88BA6NC98 1476 aa38.27■■■■□ 3.72
TMED4-205ENST00000481238 BAZ1BQ9UIG0 1483 aaKnown RBP38.19■■■■□ 3.7
TMED4-205ENST00000481238 NCAPD3P42695 1498 aa38.09■■■■□ 3.69
TMED4-205ENST00000481238 HMGXB3Q12766 1538 aa37.98■■■■□ 3.67
TMED4-205ENST00000481238 TRIM41Q8WV44 630 aa37.85■■■■□ 3.65
TMED4-205ENST00000481238 CC2D2AQ9P2K1 1620 aa37.73■■■■□ 3.63
TMED4-205ENST00000481238 ABCC8Q09428 1581 aa37.47■■■■□ 3.59
TMED4-205ENST00000481238 CFTRP13569 1480 aa37.29■■■■□ 3.56
TMED4-205ENST00000481238 WRNQ14191 1432 aaPredicted RBP eCLIP37.26■■■■□ 3.56
TMED4-205ENST00000481238 LOC105371045A0A1W2PR82 267 aa37.2■■■■□ 3.55
TMED4-205ENST00000481238 CADPSQ9ULU8 1353 aa37.14■■■■□ 3.54
TMED4-205ENST00000481238 FAM9AQ8IZU1 332 aaPredicted RBP37.14■■■■□ 3.54
TMED4-205ENST00000481238 SYNJ1O43426 1573 aa37.04■■■■□ 3.52
TMED4-205ENST00000481238 PRDM2Q13029 1718 aa36.94■■■■□ 3.5
TMED4-205ENST00000481238 TOP2BQ02880 1626 aa36.89■■■■□ 3.5
TMED4-205ENST00000481238 SOGA1O94964 1423 aa36.87■■■■□ 3.49
TMED4-205ENST00000481238 EEA1Q15075 1411 aa36.85■■■■□ 3.49
TMED4-205ENST00000481238 BIVM-ERCC5R4GMW8 1640 aa36.83■■■■□ 3.49
TMED4-205ENST00000481238 DNAJC5BQ9UF47 199 aa36.81■■■■□ 3.48
TMED4-205ENST00000481238 CUX1P39880 1505 aa36.77■■■■□ 3.48
TMED4-205ENST00000481238 RUSC2Q8N2Y8 1516 aa36.71■■■■□ 3.47
TMED4-205ENST00000481238 LAMC3Q9Y6N6 1575 aa36.69■■■■□ 3.46
TMED4-205ENST00000481238 CSRNP3Q8WYN3 585 aa36.69■■■■□ 3.46
TMED4-205ENST00000481238 NESP48681 1621 aa36.68■■■■□ 3.46
TMED4-205ENST00000481238 FANCD2Q9BXW9 1451 aa36.68■■■■□ 3.46
TMED4-205ENST00000481238 EHMT2Q96KQ7 1210 aa36.58■■■■□ 3.45
TMED4-205ENST00000481238 PDS5BQ9NTI5 1447 aa36.47■■■■□ 3.43
TMED4-205ENST00000481238 CEP164Q9UPV0 1460 aa36.41■■■■□ 3.42
TMED4-205ENST00000481238 DNMBPQ6XZF7 1577 aa36.35■■■■□ 3.41
TMED4-205ENST00000481238 FGD5Q6ZNL6 1462 aa36.34■■■■□ 3.41
TMED4-205ENST00000481238 GOLGA3Q08378 1498 aa36.32■■■■□ 3.41
TMED4-205ENST00000481238 KIF27Q86VH2 1401 aa36.32■■■■□ 3.4
TMED4-205ENST00000481238 TOPBP1Q92547 1522 aa36.3■■■■□ 3.4
TMED4-205ENST00000481238 TNIKQ9UKE5 1360 aa36.3■■■■□ 3.4
TMED4-205ENST00000481238 KIF21BO75037 1637 aa36.3■■■■□ 3.4
TMED4-205ENST00000481238 UBTFP17480 764 aaKnown RBP36.21■■■■□ 3.39
TMED4-205ENST00000481238 URB2Q14146 1524 aaKnown RBP36.2■■■■□ 3.39
TMED4-205ENST00000481238 KIF21AQ7Z4S6 1674 aa36.16■■■■□ 3.38
TMED4-205ENST00000481238 CUX2O14529 1486 aa36.16■■■■□ 3.38
TMED4-205ENST00000481238 POLA1P09884 1462 aaPredicted RBP36.14■■■■□ 3.38
TMED4-205ENST00000481238 PRXQ9BXM0 1461 aa36.12■■■■□ 3.37
TMED4-205ENST00000481238 RAPGEF2Q9Y4G8 1499 aa36.09■■■■□ 3.37
TMED4-205ENST00000481238 CEP162Q5TB80 1403 aa36.07■■■■□ 3.36
TMED4-205ENST00000481238 ERICH3Q5RHP9 1530 aa36.04■■■■□ 3.36
TMED4-205ENST00000481238 ABCA10Q8WWZ4 1543 aa36.04■■■■□ 3.36
TMED4-205ENST00000481238 RAD54L2Q9Y4B4 1467 aa36.04■■■■□ 3.36
TMED4-205ENST00000481238 IGF1RP08069 1367 aa36.02■■■■□ 3.36
TMED4-205ENST00000481238 MRC2Q9UBG0 1479 aa35.94■■■■□ 3.34
TMED4-205ENST00000481238 CARMIL1Q5VZK9 1371 aa35.83■■■■□ 3.33
TMED4-205ENST00000481238 WDR97A6NE52 1622 aa35.8■■■■□ 3.32
TMED4-205ENST00000481238 CLIP1P30622 1438 aa35.76■■■■□ 3.32
TMED4-205ENST00000481238 ERCC6Q03468 1493 aa35.75■■■■□ 3.31
TMED4-205ENST00000481238 WDR62O43379 1518 aa35.73■■■■□ 3.31
TMED4-205ENST00000481238 TARBP1Q13395 1621 aaKnown RBP35.71■■■■□ 3.31
TMED4-205ENST00000481238 TDRD9Q8NDG6 1382 aaKnown RBP35.69■■■■□ 3.3
TMED4-205ENST00000481238 PCGF6Q9BYE7 350 aa35.68■■■■□ 3.3
TMED4-205ENST00000481238 ABCA5Q8WWZ7 1642 aa35.67■■■■□ 3.3
TMED4-205ENST00000481238 TRIM26Q12899 539 aaPredicted RBP35.66■■■■□ 3.3
TMED4-205ENST00000481238 GAPVD1Q14C86 1478 aa35.65■■■■□ 3.3
TMED4-205ENST00000481238 CUL7Q14999 1698 aa35.6■■■■□ 3.29
TMED4-205ENST00000481238 IFT140Q96RY7 1462 aa35.56■■■■□ 3.28
TMED4-205ENST00000481238 THOC2Q8NI27 1593 aaKnown RBP35.53■■■■□ 3.28
TMED4-205ENST00000481238 RANGAP1P46060 587 aaPredicted RBP35.53■■■■□ 3.28
TMED4-205ENST00000481238 VPS8Q8N3P4 1428 aa35.48■■■■□ 3.27
TMED4-205ENST00000481238 AQRO60306 1485 aaKnown RBP eCLIP35.42■■■■□ 3.263e-7■■■■■ 28
TMED4-205ENST00000481238 PPARGC1BQ86YN6 1023 aaKnown RBP35.4■■■■□ 3.26
TMED4-205ENST00000481238 ARAP1Q96P48 1450 aa35.37■■■■□ 3.25
TMED4-205ENST00000481238 ZNF608Q9ULD9 1512 aaPredicted RBP35.34■■■■□ 3.25
TMED4-205ENST00000481238 GRIN2BQ13224 1484 aa35.34■■■■□ 3.25
TMED4-205ENST00000481238 ARHGAP35Q9NRY4 1499 aa35.34■■■■□ 3.25
TMED4-205ENST00000481238 PBRM1Q86U86 1689 aa35.32■■■■□ 3.24
TMED4-205ENST00000481238 FHAD1B1AJZ9 1412 aa35.28■■■■□ 3.24
TMED4-205ENST00000481238 ADAMTS12P58397 1594 aa35.19■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms