RNA–Protein interactions for RNA: ENST00000457408.6

TMED4-203, Transcript of transmembrane p24 trafficking protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMED4, Length 2,322 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMED4-203ENST00000457408 NISCHQ9Y2I1 1504 aa44.95■■■■■ 4.79
TMED4-203ENST00000457408 CCDC180Q9P1Z9 1646 aa38.72■■■■□ 3.79
TMED4-203ENST00000457408 ZCCHC6Q5VYS8 1495 aaKnown RBP37.8■■■■□ 3.64
TMED4-203ENST00000457408 DCAF8L2P0C7V8 631 aa37.66■■■■□ 3.62
TMED4-203ENST00000457408 SHROOM4Q9ULL8 1493 aa37.59■■■■□ 3.61
TMED4-203ENST00000457408 DCAF1Q9Y4B6 1507 aa36.9■■■■□ 3.5
TMED4-203ENST00000457408 ABCC9O60706 1549 aa36.76■■■■□ 3.47
TMED4-203ENST00000457408 SUPT5HO00267 1087 aaKnown RBP36.41■■■■□ 3.42
TMED4-203ENST00000457408 MYO15BQ96JP2 1530 aa36.22■■■■□ 3.39
TMED4-203ENST00000457408 SCRIBQ14160 1630 aa36.11■■■■□ 3.37
TMED4-203ENST00000457408 NACADO15069 1562 aa36.06■■■■□ 3.36
TMED4-203ENST00000457408 RB1CC1Q8TDY2 1594 aa35.72■■■■□ 3.31
TMED4-203ENST00000457408 RSF1Q96T23 1441 aaPredicted RBP35.17■■■■□ 3.22
TMED4-203ENST00000457408 CECR2Q9BXF3 1484 aa35.11■■■■□ 3.21
TMED4-203ENST00000457408 UNC13AQ9UPW8 1703 aa35.07■■■■□ 3.2
TMED4-203ENST00000457408 PABPN1Q86U42 306 aaKnown RBP eCLIP34.94■■■■□ 3.18
TMED4-203ENST00000457408 MROH2BQ7Z745 1585 aa34.88■■■■□ 3.17
TMED4-203ENST00000457408 CHIC1Q5VXU3 224 aa34.86■■■■□ 3.17
TMED4-203ENST00000457408 BICRAQ9NZM4 1560 aa34.69■■■■□ 3.14
TMED4-203ENST00000457408 WIZO95785 1651 aa34.64■■■■□ 3.14
TMED4-203ENST00000457408 BAZ1AQ9NRL2 1556 aaPredicted RBP34.63■■■■□ 3.13
TMED4-203ENST00000457408 SMARCA4P51532 1647 aa34.45■■■■□ 3.11
TMED4-203ENST00000457408 TOP2AP11388 1531 aaKnown RBP34.11■■■■□ 3.05
TMED4-203ENST00000457408 TRIM41Q8WV44 630 aa34.02■■■■□ 3.04
TMED4-203ENST00000457408 CCDC88BA6NC98 1476 aa33.94■■■■□ 3.02
TMED4-203ENST00000457408 SMARCA2P51531 1590 aa33.87■■■■□ 3.01
TMED4-203ENST00000457408 PEG3Q9GZU2 1588 aa33.82■■■■□ 3.01
TMED4-203ENST00000457408 ATAD2BQ9ULI0 1458 aa33.82■■■■□ 3
TMED4-203ENST00000457408 LOC105371045A0A1W2PR82 267 aa33.79■■■■□ 3
TMED4-203ENST00000457408 BAZ1BQ9UIG0 1483 aaKnown RBP33.71■■■□□ 2.99
TMED4-203ENST00000457408 FAM9AQ8IZU1 332 aaPredicted RBP33.68■■■□□ 2.98
TMED4-203ENST00000457408 EIF4G1Q04637 1599 aaKnown RBP33.65■■■□□ 2.98
TMED4-203ENST00000457408 ABCC8Q09428 1581 aa33.5■■■□□ 2.95
TMED4-203ENST00000457408 EHMT2Q96KQ7 1210 aa33.43■■■□□ 2.94
TMED4-203ENST00000457408 NCAPD3P42695 1498 aa33.35■■■□□ 2.93
TMED4-203ENST00000457408 HMGXB3Q12766 1538 aa33.26■■■□□ 2.92
TMED4-203ENST00000457408 WRNQ14191 1432 aaPredicted RBP eCLIP33.1■■■□□ 2.89
TMED4-203ENST00000457408 CC2D2AQ9P2K1 1620 aa33.08■■■□□ 2.89
TMED4-203ENST00000457408 SOGA1O94964 1423 aa32.98■■■□□ 2.87
TMED4-203ENST00000457408 SYNJ1O43426 1573 aa32.93■■■□□ 2.86
TMED4-203ENST00000457408 RUSC2Q8N2Y8 1516 aa32.86■■■□□ 2.85
TMED4-203ENST00000457408 CFTRP13569 1480 aa32.79■■■□□ 2.84
TMED4-203ENST00000457408 CSRNP3Q8WYN3 585 aa32.76■■■□□ 2.83
TMED4-203ENST00000457408 PCGF6Q9BYE7 350 aa32.74■■■□□ 2.83
TMED4-203ENST00000457408 EEA1Q15075 1411 aa32.67■■■□□ 2.82
TMED4-203ENST00000457408 CADPSQ9ULU8 1353 aa32.66■■■□□ 2.82
TMED4-203ENST00000457408 TOP2BQ02880 1626 aa32.64■■■□□ 2.82
TMED4-203ENST00000457408 UBTFP17480 764 aaKnown RBP32.57■■■□□ 2.81
TMED4-203ENST00000457408 CUX1P39880 1505 aa32.54■■■□□ 2.8
TMED4-203ENST00000457408 BIVM-ERCC5R4GMW8 1640 aa32.52■■■□□ 2.8
TMED4-203ENST00000457408 DNAJC5BQ9UF47 199 aa32.5■■■□□ 2.79
TMED4-203ENST00000457408 PRDM2Q13029 1718 aa32.45■■■□□ 2.79
TMED4-203ENST00000457408 NESP48681 1621 aa32.41■■■□□ 2.78
TMED4-203ENST00000457408 GOLGA3Q08378 1498 aa32.39■■■□□ 2.78
TMED4-203ENST00000457408 TNIKQ9UKE5 1360 aa32.38■■■□□ 2.77
TMED4-203ENST00000457408 TRIM26Q12899 539 aaPredicted RBP32.36■■■□□ 2.77
TMED4-203ENST00000457408 PPARGC1BQ86YN6 1023 aaKnown RBP32.36■■■□□ 2.77
TMED4-203ENST00000457408 CEP162Q5TB80 1403 aa32.35■■■□□ 2.77
TMED4-203ENST00000457408 FANCD2Q9BXW9 1451 aa32.33■■■□□ 2.77
TMED4-203ENST00000457408 CEP164Q9UPV0 1460 aa32.33■■■□□ 2.77
TMED4-203ENST00000457408 KIF21BO75037 1637 aa32.24■■■□□ 2.75
TMED4-203ENST00000457408 RAPGEF2Q9Y4G8 1499 aa32.23■■■□□ 2.75
TMED4-203ENST00000457408 RANGAP1P46060 587 aaPredicted RBP32.21■■■□□ 2.75
TMED4-203ENST00000457408 KIF27Q86VH2 1401 aa32.19■■■□□ 2.74
TMED4-203ENST00000457408 FGD5Q6ZNL6 1462 aa32.15■■■□□ 2.74
TMED4-203ENST00000457408 LAMC3Q9Y6N6 1575 aa32.11■■■□□ 2.73
TMED4-203ENST00000457408 CUX2O14529 1486 aa32.09■■■□□ 2.73
TMED4-203ENST00000457408 TTBK1Q5TCY1 1321 aaPredicted RBP32.06■■■□□ 2.72
TMED4-203ENST00000457408 PRXQ9BXM0 1461 aa32.02■■■□□ 2.72
TMED4-203ENST00000457408 TOPBP1Q92547 1522 aa32■■■□□ 2.71
TMED4-203ENST00000457408 CLIP1P30622 1438 aa32■■■□□ 2.71
TMED4-203ENST00000457408 DNMBPQ6XZF7 1577 aa31.99■■■□□ 2.71
TMED4-203ENST00000457408 PDS5BQ9NTI5 1447 aa31.98■■■□□ 2.71
TMED4-203ENST00000457408 HRCP23327 699 aa31.96■■■□□ 2.71
TMED4-203ENST00000457408 RAD54L2Q9Y4B4 1467 aa31.95■■■□□ 2.71
TMED4-203ENST00000457408 ERICH3Q5RHP9 1530 aa31.92■■■□□ 2.7
TMED4-203ENST00000457408 IGF1RP08069 1367 aa31.91■■■□□ 2.7
TMED4-203ENST00000457408 POLA1P09884 1462 aaPredicted RBP31.91■■■□□ 2.7
TMED4-203ENST00000457408 URB2Q14146 1524 aaKnown RBP31.9■■■□□ 2.7
TMED4-203ENST00000457408 KIF21AQ7Z4S6 1674 aa31.84■■■□□ 2.69
TMED4-203ENST00000457408 CARMIL1Q5VZK9 1371 aa31.78■■■□□ 2.68
TMED4-203ENST00000457408 ABCA10Q8WWZ4 1543 aa31.75■■■□□ 2.67
TMED4-203ENST00000457408 VPS8Q8N3P4 1428 aa31.69■■■□□ 2.66
TMED4-203ENST00000457408 TDRD9Q8NDG6 1382 aaKnown RBP31.67■■■□□ 2.66
TMED4-203ENST00000457408 APLP2Q06481 763 aa31.64■■■□□ 2.66
TMED4-203ENST00000457408 ARAP1Q96P48 1450 aa31.56■■■□□ 2.64
TMED4-203ENST00000457408 MRC2Q9UBG0 1479 aa31.51■■■□□ 2.64
TMED4-203ENST00000457408 WDR97A6NE52 1622 aa31.5■■■□□ 2.63
TMED4-203ENST00000457408 GAPVD1Q14C86 1478 aa31.48■■■□□ 2.63
TMED4-203ENST00000457408 ARHGAP35Q9NRY4 1499 aa31.48■■■□□ 2.63
TMED4-203ENST00000457408 ERCC6Q03468 1493 aa31.42■■■□□ 2.62
TMED4-203ENST00000457408 P3H3Q8IVL6 736 aa31.41■■■□□ 2.62
TMED4-203ENST00000457408 ABCA5Q8WWZ7 1642 aa31.41■■■□□ 2.62
TMED4-203ENST00000457408 TARBP1Q13395 1621 aaKnown RBP31.4■■■□□ 2.62
TMED4-203ENST00000457408 CUL7Q14999 1698 aa31.4■■■□□ 2.62
TMED4-203ENST00000457408 AQRO60306 1485 aaKnown RBP eCLIP31.35■■■□□ 2.613e-7■■■■■ 28
TMED4-203ENST00000457408 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.3■■■□□ 2.6
TMED4-203ENST00000457408 KANK4Q5T7N3 995 aaPredicted RBP31.29■■■□□ 2.6
TMED4-203ENST00000457408 WDR62O43379 1518 aa31.25■■■□□ 2.59
TMED4-203ENST00000457408 ATP1B4Q9UN42 357 aaPredicted RBP31.21■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms