RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 NISCHQ9Y2I1 1504 aa23.26■■□□□ 1.31
TPM3-212ENST00000368533 CCDC180Q9P1Z9 1646 aa19.97■□□□□ 0.79
TPM3-212ENST00000368533 DCAF8L2P0C7V8 631 aa19.9■□□□□ 0.78
TPM3-212ENST00000368533 SHROOM4Q9ULL8 1493 aa19.69■□□□□ 0.74
TPM3-212ENST00000368533 ZCCHC6Q5VYS8 1495 aaKnown RBP19.51■□□□□ 0.71
TPM3-212ENST00000368533 ABCC9O60706 1549 aa19.41■□□□□ 0.7
TPM3-212ENST00000368533 SUPT5HO00267 1087 aaKnown RBP18.98■□□□□ 0.63
TPM3-212ENST00000368533 DCAF1Q9Y4B6 1507 aa18.93■□□□□ 0.62
TPM3-212ENST00000368533 SCRIBQ14160 1630 aa18.86■□□□□ 0.61
TPM3-212ENST00000368533 NACADO15069 1562 aa18.67■□□□□ 0.58
TPM3-212ENST00000368533 MYO15BQ96JP2 1530 aa18.59■□□□□ 0.57
TPM3-212ENST00000368533 RB1CC1Q8TDY2 1594 aa18.58■□□□□ 0.56
TPM3-212ENST00000368533 PABPN1Q86U42 306 aaKnown RBP eCLIP18.5■□□□□ 0.55
TPM3-212ENST00000368533 CECR2Q9BXF3 1484 aa18.31■□□□□ 0.52
TPM3-212ENST00000368533 UNC13AQ9UPW8 1703 aa18.29■□□□□ 0.52
TPM3-212ENST00000368533 RSF1Q96T23 1441 aaPredicted RBP18.2■□□□□ 0.5
TPM3-212ENST00000368533 MROH2BQ7Z745 1585 aa18.13■□□□□ 0.49
TPM3-212ENST00000368533 BICRAQ9NZM4 1560 aa18.09■□□□□ 0.49
TPM3-212ENST00000368533 WIZO95785 1651 aa18.01■□□□□ 0.47
TPM3-212ENST00000368533 CHIC1Q5VXU3 224 aa17.94■□□□□ 0.46
TPM3-212ENST00000368533 BAZ1AQ9NRL2 1556 aaPredicted RBP17.9■□□□□ 0.46
TPM3-212ENST00000368533 SMARCA4P51532 1647 aa17.86■□□□□ 0.45
TPM3-212ENST00000368533 EHMT2Q96KQ7 1210 aa17.65■□□□□ 0.42
TPM3-212ENST00000368533 FAM9AQ8IZU1 332 aaPredicted RBP17.63■□□□□ 0.41
TPM3-212ENST00000368533 TRIM41Q8WV44 630 aa17.62■□□□□ 0.41
TPM3-212ENST00000368533 TOP2AP11388 1531 aaKnown RBP17.62■□□□□ 0.41
TPM3-212ENST00000368533 CCDC88BA6NC98 1476 aa17.61■□□□□ 0.41
TPM3-212ENST00000368533 ATAD2BQ9ULI0 1458 aa17.6■□□□□ 0.41
TPM3-212ENST00000368533 EIF4G1Q04637 1599 aaKnown RBP17.58■□□□□ 0.4
TPM3-212ENST00000368533 BAZ1BQ9UIG0 1483 aaKnown RBP17.55■□□□□ 0.4
TPM3-212ENST00000368533 LOC105371045A0A1W2PR82 267 aa17.53■□□□□ 0.4
TPM3-212ENST00000368533 SMARCA2P51531 1590 aa17.53■□□□□ 0.4
TPM3-212ENST00000368533 ABCC8Q09428 1581 aa17.43■□□□□ 0.38
TPM3-212ENST00000368533 PEG3Q9GZU2 1588 aa17.43■□□□□ 0.38
TPM3-212ENST00000368533 CC2D2AQ9P2K1 1620 aa17.35■□□□□ 0.37
TPM3-212ENST00000368533 DNAJC5BQ9UF47 199 aa17.33■□□□□ 0.37
TPM3-212ENST00000368533 NCAPD3P42695 1498 aa17.31■□□□□ 0.36
TPM3-212ENST00000368533 HRCP23327 699 aa17.25■□□□□ 0.35
TPM3-212ENST00000368533 HMGXB3Q12766 1538 aa17.21■□□□□ 0.35
TPM3-212ENST00000368533 PPARGC1BQ86YN6 1023 aaKnown RBP17.21■□□□□ 0.34
TPM3-212ENST00000368533 WRNQ14191 1432 aaPredicted RBP eCLIP17.14■□□□□ 0.339e-7■■■□□ 18.8
TPM3-212ENST00000368533 SOGA1O94964 1423 aa17.12■□□□□ 0.33
TPM3-212ENST00000368533 RUSC2Q8N2Y8 1516 aa17.09■□□□□ 0.33
TPM3-212ENST00000368533 PCGF6Q9BYE7 350 aa17.09■□□□□ 0.33
TPM3-212ENST00000368533 SYNJ1O43426 1573 aa17.07■□□□□ 0.32
TPM3-212ENST00000368533 NESP48681 1621 aa17.06■□□□□ 0.32
TPM3-212ENST00000368533 CFTRP13569 1480 aa17.01■□□□□ 0.31
TPM3-212ENST00000368533 CADPSQ9ULU8 1353 aa17.01■□□□□ 0.31
TPM3-212ENST00000368533 RANGAP1P46060 587 aaPredicted RBP16.99■□□□□ 0.31
TPM3-212ENST00000368533 UBTFP17480 764 aaKnown RBP16.94■□□□□ 0.3
TPM3-212ENST00000368533 CSRNP3Q8WYN3 585 aa16.93■□□□□ 0.3
TPM3-212ENST00000368533 CUX1P39880 1505 aa16.91■□□□□ 0.3
TPM3-212ENST00000368533 FANCD2Q9BXW9 1451 aa16.87■□□□□ 0.29
TPM3-212ENST00000368533 PELP1Q8IZL8 1130 aaKnown RBP16.86■□□□□ 0.29
TPM3-212ENST00000368533 TTBK1Q5TCY1 1321 aaPredicted RBP16.86■□□□□ 0.29
TPM3-212ENST00000368533 TOP2BQ02880 1626 aa16.84■□□□□ 0.29
TPM3-212ENST00000368533 AEBP2Q6ZN18 517 aaPredicted RBP16.83■□□□□ 0.29
TPM3-212ENST00000368533 BIVM-ERCC5R4GMW8 1640 aa16.75■□□□□ 0.27
TPM3-212ENST00000368533 FGD5Q6ZNL6 1462 aa16.74■□□□□ 0.27
TPM3-212ENST00000368533 PRDM2Q13029 1718 aa16.73■□□□□ 0.27
TPM3-212ENST00000368533 RAD54L2Q9Y4B4 1467 aa16.72■□□□□ 0.27
TPM3-212ENST00000368533 CEP164Q9UPV0 1460 aa16.71■□□□□ 0.27
TPM3-212ENST00000368533 CUX2O14529 1486 aa16.71■□□□□ 0.27
TPM3-212ENST00000368533 RAPGEF2Q9Y4G8 1499 aa16.71■□□□□ 0.26
TPM3-212ENST00000368533 EEA1Q15075 1411 aa16.7■□□□□ 0.26
TPM3-212ENST00000368533 LAMC3Q9Y6N6 1575 aa16.68■□□□□ 0.26
TPM3-212ENST00000368533 CEP162Q5TB80 1403 aa16.67■□□□□ 0.26
TPM3-212ENST00000368533 PDS5BQ9NTI5 1447 aa16.66■□□□□ 0.26
TPM3-212ENST00000368533 GOLGA3Q08378 1498 aa16.66■□□□□ 0.26
TPM3-212ENST00000368533 KIF21AQ7Z4S6 1674 aa16.66■□□□□ 0.26
TPM3-212ENST00000368533 TOPBP1Q92547 1522 aa16.66■□□□□ 0.26
TPM3-212ENST00000368533 KIF27Q86VH2 1401 aa16.65■□□□□ 0.26
TPM3-212ENST00000368533 URB2Q14146 1524 aaKnown RBP16.65■□□□□ 0.26
TPM3-212ENST00000368533 TRIM26Q12899 539 aaPredicted RBP16.63■□□□□ 0.25
TPM3-212ENST00000368533 SCAF1Q9H7N4 1312 aaKnown RBP16.63■□□□□ 0.25
TPM3-212ENST00000368533 POLA1P09884 1462 aaPredicted RBP16.62■□□□□ 0.25
TPM3-212ENST00000368533 TDRD9Q8NDG6 1382 aaKnown RBP16.61■□□□□ 0.25
TPM3-212ENST00000368533 TNIKQ9UKE5 1360 aa16.61■□□□□ 0.25
TPM3-212ENST00000368533 DNMBPQ6XZF7 1577 aa16.59■□□□□ 0.25
TPM3-212ENST00000368533 ERCC6Q03468 1493 aa16.56■□□□□ 0.24
TPM3-212ENST00000368533 IGF1RP08069 1367 aa16.55■□□□□ 0.24
TPM3-212ENST00000368533 KIF21BO75037 1637 aa16.53■□□□□ 0.24
TPM3-212ENST00000368533 CLIP1P30622 1438 aa16.51■□□□□ 0.23
TPM3-212ENST00000368533 P3H3Q8IVL6 736 aa16.5■□□□□ 0.23
TPM3-212ENST00000368533 PRXQ9BXM0 1461 aa16.5■□□□□ 0.23
TPM3-212ENST00000368533 CARMIL1Q5VZK9 1371 aa16.5■□□□□ 0.23
TPM3-212ENST00000368533 AQRO60306 1485 aaKnown RBP eCLIP16.45■□□□□ 0.224e-7■■□□□ 12.7
TPM3-212ENST00000368533 MRC2Q9UBG0 1479 aa16.44■□□□□ 0.22
TPM3-212ENST00000368533 ABCA10Q8WWZ4 1543 aa16.43■□□□□ 0.22
TPM3-212ENST00000368533 ATP1B4Q9UN42 357 aaPredicted RBP16.4■□□□□ 0.22
TPM3-212ENST00000368533 GAPVD1Q14C86 1478 aa16.39■□□□□ 0.21
TPM3-212ENST00000368533 ZNF608Q9ULD9 1512 aaPredicted RBP16.38■□□□□ 0.21
TPM3-212ENST00000368533 ERICH3Q5RHP9 1530 aa16.37■□□□□ 0.21
TPM3-212ENST00000368533 FBLN2P98095 1184 aa16.36■□□□□ 0.21
TPM3-212ENST00000368533 APLP2Q06481 763 aa16.35■□□□□ 0.21
TPM3-212ENST00000368533 TARBP1Q13395 1621 aaKnown RBP16.31■□□□□ 0.2
TPM3-212ENST00000368533 ARAP1Q96P48 1450 aa16.31■□□□□ 0.2
TPM3-212ENST00000368533 WDR97A6NE52 1622 aa16.29■□□□□ 0.2
TPM3-212ENST00000368533 VPS8Q8N3P4 1428 aa16.29■□□□□ 0.2
TPM3-212ENST00000368533 ABCA5Q8WWZ7 1642 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms