RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, humanhuman

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR4-208ENST00000471880 NISCHQ9Y2I1 1504 aa36.3■■■■□ 3.4
SSR4-208ENST00000471880 CCDC180Q9P1Z9 1646 aa32.44■■■□□ 2.78
SSR4-208ENST00000471880 ABCC9O60706 1549 aa32.02■■■□□ 2.72
SSR4-208ENST00000471880 RB1CC1Q8TDY2 1594 aa30.6■■■□□ 2.49
SSR4-208ENST00000471880 NACADO15069 1562 aa30.49■■■□□ 2.47
SSR4-208ENST00000471880 DCAF8L2P0C7V8 631 aa30.43■■■□□ 2.46
SSR4-208ENST00000471880 ZCCHC6Q5VYS8 1495 aaKnown RBP30.19■■■□□ 2.42
SSR4-208ENST00000471880 MYO15BQ96JP2 1530 aa30.17■■■□□ 2.42
SSR4-208ENST00000471880 UNC13AQ9UPW8 1703 aa30.17■■■□□ 2.42
SSR4-208ENST00000471880 DCAF1Q9Y4B6 1507 aa29.96■■■□□ 2.39
SSR4-208ENST00000471880 BICRAQ9NZM4 1560 aa29.84■■■□□ 2.37
SSR4-208ENST00000471880 PABPN1Q86U42 306 aaKnown RBP eCLIP29.83■■■□□ 2.37
SSR4-208ENST00000471880 DNAJC5BQ9UF47 199 aa29.72■■■□□ 2.35
SSR4-208ENST00000471880 SCRIBQ14160 1630 aa29.61■■■□□ 2.33
SSR4-208ENST00000471880 SHROOM4Q9ULL8 1493 aa29.26■■■□□ 2.27
SSR4-208ENST00000471880 EIF4G1Q04637 1599 aaKnown RBP28.99■■■□□ 2.23
SSR4-208ENST00000471880 CC2D2AQ9P2K1 1620 aa28.98■■■□□ 2.23
SSR4-208ENST00000471880 CECR2Q9BXF3 1484 aa28.75■■■□□ 2.19
SSR4-208ENST00000471880 SMARCA4P51532 1647 aa28.28■■■□□ 2.12
SSR4-208ENST00000471880 ATAD2BQ9ULI0 1458 aa28.15■■■□□ 2.1
SSR4-208ENST00000471880 NCAPD3P42695 1498 aa28.13■■■□□ 2.09
SSR4-208ENST00000471880 BAZ1AQ9NRL2 1556 aaPredicted RBP28.11■■■□□ 2.09
SSR4-208ENST00000471880 SMARCA2P51531 1590 aa28.04■■■□□ 2.08
SSR4-208ENST00000471880 MROH2BQ7Z745 1585 aa28.04■■■□□ 2.08
SSR4-208ENST00000471880 HMGXB3Q12766 1538 aa27.99■■■□□ 2.07
SSR4-208ENST00000471880 PEG3Q9GZU2 1588 aa27.97■■■□□ 2.07
SSR4-208ENST00000471880 BAZ1BQ9UIG0 1483 aaKnown RBP27.86■■■□□ 2.05
SSR4-208ENST00000471880 WIZO95785 1651 aa27.76■■■□□ 2.03
SSR4-208ENST00000471880 NESP48681 1621 aa27.68■■■□□ 2.02
SSR4-208ENST00000471880 RSF1Q96T23 1441 aaPredicted RBP27.55■■■□□ 2
SSR4-208ENST00000471880 ERCC6Q03468 1493 aa27.51■■□□□ 1.99
SSR4-208ENST00000471880 LAMC3Q9Y6N6 1575 aa27.45■■□□□ 1.99
SSR4-208ENST00000471880 KIF21AQ7Z4S6 1674 aa27.4■■□□□ 1.98
SSR4-208ENST00000471880 TOP2AP11388 1531 aaKnown RBP27.36■■□□□ 1.97
SSR4-208ENST00000471880 THOC2Q8NI27 1593 aaKnown RBP27.33■■□□□ 1.97
SSR4-208ENST00000471880 CUX2O14529 1486 aa27.32■■□□□ 1.96
SSR4-208ENST00000471880 CADPSQ9ULU8 1353 aa27.27■■□□□ 1.96
SSR4-208ENST00000471880 PDS5BQ9NTI5 1447 aa27.18■■□□□ 1.94
SSR4-208ENST00000471880 CFTRP13569 1480 aa27.08■■□□□ 1.93
SSR4-208ENST00000471880 CCDC88BA6NC98 1476 aa27.04■■□□□ 1.92
SSR4-208ENST00000471880 MRC2Q9UBG0 1479 aa27.01■■□□□ 1.91
SSR4-208ENST00000471880 PRDM2Q13029 1718 aa27.01■■□□□ 1.91
SSR4-208ENST00000471880 FANCD2Q9BXW9 1451 aa27■■□□□ 1.91
SSR4-208ENST00000471880 WDR62O43379 1518 aa26.98■■□□□ 1.91
SSR4-208ENST00000471880 CEP164Q9UPV0 1460 aa26.98■■□□□ 1.91
SSR4-208ENST00000471880 DNAJC5Q9H3Z4 198 aa26.84■■□□□ 1.89
SSR4-208ENST00000471880 URB2Q14146 1524 aaKnown RBP26.83■■□□□ 1.89
SSR4-208ENST00000471880 SUPT5HO00267 1087 aaKnown RBP26.75■■□□□ 1.87
SSR4-208ENST00000471880 TOPBP1Q92547 1522 aa26.58■■□□□ 1.85
SSR4-208ENST00000471880 DNMBPQ6XZF7 1577 aa26.5■■□□□ 1.83
SSR4-208ENST00000471880 ZNF608Q9ULD9 1512 aaPredicted RBP26.44■■□□□ 1.82
SSR4-208ENST00000471880 ABCC8Q09428 1581 aa26.41■■□□□ 1.82
SSR4-208ENST00000471880 IFT140Q96RY7 1462 aa26.4■■□□□ 1.82
SSR4-208ENST00000471880 TARBP1Q13395 1621 aaKnown RBP26.37■■□□□ 1.81
SSR4-208ENST00000471880 POLA1P09884 1462 aaPredicted RBP26.33■■□□□ 1.81
SSR4-208ENST00000471880 EIF4G3O43432 1585 aaKnown RBP26.33■■□□□ 1.8
SSR4-208ENST00000471880 CUX1P39880 1505 aa26.31■■□□□ 1.8
SSR4-208ENST00000471880 RAD54L2Q9Y4B4 1467 aa26.25■■□□□ 1.79
SSR4-208ENST00000471880 FGD5Q6ZNL6 1462 aa26.23■■□□□ 1.79
SSR4-208ENST00000471880 AQRO60306 1485 aaKnown RBP eCLIP26.2■■□□□ 1.781e-7■■■■■ 36.9
SSR4-208ENST00000471880 SOGA1O94964 1423 aa26.14■■□□□ 1.78
SSR4-208ENST00000471880 WDR97A6NE52 1622 aa26.14■■□□□ 1.77
SSR4-208ENST00000471880 CHD1O14646 1710 aa26.11■■□□□ 1.77
SSR4-208ENST00000471880 TDRD9Q8NDG6 1382 aaKnown RBP26.08■■□□□ 1.77
SSR4-208ENST00000471880 OSCARQ8IYS5 282 aa26.08■■□□□ 1.77
SSR4-208ENST00000471880 SYNJ1O43426 1573 aa26.02■■□□□ 1.76
SSR4-208ENST00000471880 BIVM-ERCC5R4GMW8 1640 aa26.02■■□□□ 1.76
SSR4-208ENST00000471880 TOP2BQ02880 1626 aa25.97■■□□□ 1.75
SSR4-208ENST00000471880 PBRM1Q86U86 1689 aa25.96■■□□□ 1.75
SSR4-208ENST00000471880 SNAPC4Q5SXM2 1469 aa25.94■■□□□ 1.74
SSR4-208ENST00000471880 ABCA5Q8WWZ7 1642 aa25.93■■□□□ 1.74
SSR4-208ENST00000471880 WRNQ14191 1432 aaPredicted RBP eCLIP25.93■■□□□ 1.74
SSR4-208ENST00000471880 ABCA10Q8WWZ4 1543 aa25.92■■□□□ 1.74
SSR4-208ENST00000471880 RIMBP3CA6NJZ7 1639 aa25.9■■□□□ 1.74
SSR4-208ENST00000471880 RIMBP3BA6NNM3 1639 aa25.9■■□□□ 1.74
SSR4-208ENST00000471880 RIMBP3Q9UFD9 1639 aa25.9■■□□□ 1.74
SSR4-208ENST00000471880 GRIN2BQ13224 1484 aa25.87■■□□□ 1.73
SSR4-208ENST00000471880 GAPVD1Q14C86 1478 aa25.85■■□□□ 1.73
SSR4-208ENST00000471880 FBLN2P98095 1184 aa25.85■■□□□ 1.73
SSR4-208ENST00000471880 TRIM41Q8WV44 630 aa25.84■■□□□ 1.73
SSR4-208ENST00000471880 MAGI1Q96QZ7 1491 aaPredicted RBP25.84■■□□□ 1.73
SSR4-208ENST00000471880 ARHGEF11O15085 1522 aa25.81■■□□□ 1.72
SSR4-208ENST00000471880 CLASP1Q7Z460 1538 aa25.75■■□□□ 1.71
SSR4-208ENST00000471880 SYNJ2O15056 1496 aa25.75■■□□□ 1.71
SSR4-208ENST00000471880 ADAMTS12P58397 1594 aa25.69■■□□□ 1.7
SSR4-208ENST00000471880 CHMP7Q8WUX9 453 aaPredicted RBP25.68■■□□□ 1.7
SSR4-208ENST00000471880 ARAP1Q96P48 1450 aa25.6■■□□□ 1.69
SSR4-208ENST00000471880 GRIN2AQ12879 1464 aa25.59■■□□□ 1.69
SSR4-208ENST00000471880 ERICH3Q5RHP9 1530 aa25.58■■□□□ 1.69
SSR4-208ENST00000471880 CEP170Q5SW79 1584 aa25.56■■□□□ 1.68
SSR4-208ENST00000471880 FHAD1B1AJZ9 1412 aa25.52■■□□□ 1.68
SSR4-208ENST00000471880 CYB5RLQ6IPT4 315 aa25.5■■□□□ 1.67
SSR4-208ENST00000471880 NUP160Q12769 1436 aa25.48■■□□□ 1.67
SSR4-208ENST00000471880 ERCC6L2Q5T890 1561 aa25.45■■□□□ 1.66
SSR4-208ENST00000471880 SHROOM2Q13796 1616 aa25.41■■□□□ 1.66
SSR4-208ENST00000471880 KIF27Q86VH2 1401 aa25.37■■□□□ 1.65
SSR4-208ENST00000471880 IGF1RP08069 1367 aa25.35■■□□□ 1.65
SSR4-208ENST00000471880 RUSC2Q8N2Y8 1516 aa25.33■■□□□ 1.65
SSR4-208ENST00000471880 CUL7Q14999 1698 aa25.33■■□□□ 1.65
SSR4-208ENST00000471880 PRG4Q92954 1404 aaPredicted RBP25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms