RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 NISCHQ9Y2I1 1504 aa33.19■■■□□ 2.9
TPM3-208ENST00000341485 CCDC180Q9P1Z9 1646 aa28.95■■■□□ 2.23
TPM3-208ENST00000341485 ZCCHC6Q5VYS8 1495 aaKnown RBP27.87■■■□□ 2.05
TPM3-208ENST00000341485 DCAF8L2P0C7V8 631 aa27.52■■■□□ 2
TPM3-208ENST00000341485 ABCC9O60706 1549 aa27.43■■□□□ 1.98
TPM3-208ENST00000341485 DCAF1Q9Y4B6 1507 aa27.41■■□□□ 1.98
TPM3-208ENST00000341485 SHROOM4Q9ULL8 1493 aa27.15■■□□□ 1.94
TPM3-208ENST00000341485 MYO15BQ96JP2 1530 aa27.08■■□□□ 1.93
TPM3-208ENST00000341485 NACADO15069 1562 aa26.97■■□□□ 1.91
TPM3-208ENST00000341485 RB1CC1Q8TDY2 1594 aa26.77■■□□□ 1.88
TPM3-208ENST00000341485 SCRIBQ14160 1630 aa26.67■■□□□ 1.86
TPM3-208ENST00000341485 UNC13AQ9UPW8 1703 aa26.21■■□□□ 1.79
TPM3-208ENST00000341485 SUPT5HO00267 1087 aaKnown RBP26.15■■□□□ 1.78
TPM3-208ENST00000341485 BICRAQ9NZM4 1560 aa25.91■■□□□ 1.74
TPM3-208ENST00000341485 PABPN1Q86U42 306 aaKnown RBP eCLIP25.87■■□□□ 1.73
TPM3-208ENST00000341485 CECR2Q9BXF3 1484 aa25.79■■□□□ 1.72
TPM3-208ENST00000341485 RSF1Q96T23 1441 aaPredicted RBP25.74■■□□□ 1.71
TPM3-208ENST00000341485 MROH2BQ7Z745 1585 aa25.65■■□□□ 1.7
TPM3-208ENST00000341485 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
TPM3-208ENST00000341485 SMARCA4P51532 1647 aa25.53■■□□□ 1.68
TPM3-208ENST00000341485 WIZO95785 1651 aa25.46■■□□□ 1.67
TPM3-208ENST00000341485 CHIC1Q5VXU3 224 aa25.41■■□□□ 1.66
TPM3-208ENST00000341485 TOP2AP11388 1531 aaKnown RBP25.18■■□□□ 1.62
TPM3-208ENST00000341485 PEG3Q9GZU2 1588 aa25.17■■□□□ 1.62
TPM3-208ENST00000341485 EIF4G1Q04637 1599 aaKnown RBP25.16■■□□□ 1.62
TPM3-208ENST00000341485 SMARCA2P51531 1590 aa25.1■■□□□ 1.61
TPM3-208ENST00000341485 ATAD2BQ9ULI0 1458 aa25.1■■□□□ 1.61
TPM3-208ENST00000341485 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
TPM3-208ENST00000341485 CCDC88BA6NC98 1476 aa24.92■■□□□ 1.58
TPM3-208ENST00000341485 NCAPD3P42695 1498 aa24.87■■□□□ 1.57
TPM3-208ENST00000341485 HMGXB3Q12766 1538 aa24.85■■□□□ 1.57
TPM3-208ENST00000341485 CC2D2AQ9P2K1 1620 aa24.8■■□□□ 1.56
TPM3-208ENST00000341485 LOC105371045A0A1W2PR82 267 aa24.57■■□□□ 1.52
TPM3-208ENST00000341485 TRIM41Q8WV44 630 aa24.55■■□□□ 1.52
TPM3-208ENST00000341485 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
TPM3-208ENST00000341485 CFTRP13569 1480 aa24.32■■□□□ 1.48
TPM3-208ENST00000341485 PCGF6Q9BYE7 350 aa24.26■■□□□ 1.47
TPM3-208ENST00000341485 WRNQ14191 1432 aaPredicted RBP eCLIP24.26■■□□□ 1.479e-7■■■□□ 18.8
TPM3-208ENST00000341485 CADPSQ9ULU8 1353 aa24.26■■□□□ 1.47
TPM3-208ENST00000341485 PRDM2Q13029 1718 aa24.23■■□□□ 1.47
TPM3-208ENST00000341485 HRCP23327 699 aa24.17■■□□□ 1.46
TPM3-208ENST00000341485 FAM9AQ8IZU1 332 aaPredicted RBP24.15■■□□□ 1.46
TPM3-208ENST00000341485 SYNJ1O43426 1573 aa24.14■■□□□ 1.46
TPM3-208ENST00000341485 DNAJC5BQ9UF47 199 aa24.14■■□□□ 1.45
TPM3-208ENST00000341485 NESP48681 1621 aa24.06■■□□□ 1.44
TPM3-208ENST00000341485 LAMC3Q9Y6N6 1575 aa24.06■■□□□ 1.44
TPM3-208ENST00000341485 TOP2BQ02880 1626 aa24.05■■□□□ 1.44
TPM3-208ENST00000341485 BIVM-ERCC5R4GMW8 1640 aa24.02■■□□□ 1.44
TPM3-208ENST00000341485 FANCD2Q9BXW9 1451 aa24.01■■□□□ 1.43
TPM3-208ENST00000341485 CUX1P39880 1505 aa23.98■■□□□ 1.43
TPM3-208ENST00000341485 SOGA1O94964 1423 aa23.95■■□□□ 1.42
TPM3-208ENST00000341485 TRIM26Q12899 539 aaPredicted RBP23.94■■□□□ 1.42
TPM3-208ENST00000341485 EEA1Q15075 1411 aa23.9■■□□□ 1.42
TPM3-208ENST00000341485 PDS5BQ9NTI5 1447 aa23.88■■□□□ 1.41
TPM3-208ENST00000341485 EHMT2Q96KQ7 1210 aa23.88■■□□□ 1.41
TPM3-208ENST00000341485 CEP164Q9UPV0 1460 aa23.87■■□□□ 1.41
TPM3-208ENST00000341485 RUSC2Q8N2Y8 1516 aa23.85■■□□□ 1.41
TPM3-208ENST00000341485 DNMBPQ6XZF7 1577 aa23.79■■□□□ 1.4
TPM3-208ENST00000341485 CSRNP3Q8WYN3 585 aa23.79■■□□□ 1.4
TPM3-208ENST00000341485 KIF21AQ7Z4S6 1674 aa23.78■■□□□ 1.4
TPM3-208ENST00000341485 FGD5Q6ZNL6 1462 aa23.74■■□□□ 1.39
TPM3-208ENST00000341485 TOPBP1Q92547 1522 aa23.74■■□□□ 1.39
TPM3-208ENST00000341485 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
TPM3-208ENST00000341485 KIF27Q86VH2 1401 aa23.66■■□□□ 1.38
TPM3-208ENST00000341485 PPARGC1BQ86YN6 1023 aaKnown RBP23.64■■□□□ 1.37
TPM3-208ENST00000341485 POLA1P09884 1462 aaPredicted RBP23.61■■□□□ 1.37
TPM3-208ENST00000341485 CUX2O14529 1486 aa23.6■■□□□ 1.37
TPM3-208ENST00000341485 GOLGA3Q08378 1498 aa23.59■■□□□ 1.37
TPM3-208ENST00000341485 KIF21BO75037 1637 aa23.59■■□□□ 1.37
TPM3-208ENST00000341485 MRC2Q9UBG0 1479 aa23.58■■□□□ 1.36
TPM3-208ENST00000341485 RAD54L2Q9Y4B4 1467 aa23.56■■□□□ 1.36
TPM3-208ENST00000341485 ERCC6Q03468 1493 aa23.55■■□□□ 1.36
TPM3-208ENST00000341485 UBTFP17480 764 aaKnown RBP23.53■■□□□ 1.36
TPM3-208ENST00000341485 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
TPM3-208ENST00000341485 TNIKQ9UKE5 1360 aa23.49■■□□□ 1.35
TPM3-208ENST00000341485 RAPGEF2Q9Y4G8 1499 aa23.46■■□□□ 1.35
TPM3-208ENST00000341485 PRXQ9BXM0 1461 aa23.45■■□□□ 1.34
TPM3-208ENST00000341485 WDR97A6NE52 1622 aa23.44■■□□□ 1.34
TPM3-208ENST00000341485 WDR62O43379 1518 aa23.43■■□□□ 1.34
TPM3-208ENST00000341485 CEP162Q5TB80 1403 aa23.43■■□□□ 1.34
TPM3-208ENST00000341485 ERICH3Q5RHP9 1530 aa23.43■■□□□ 1.34
TPM3-208ENST00000341485 IGF1RP08069 1367 aa23.41■■□□□ 1.34
TPM3-208ENST00000341485 THOC2Q8NI27 1593 aaKnown RBP23.36■■□□□ 1.33
TPM3-208ENST00000341485 TARBP1Q13395 1621 aaKnown RBP23.36■■□□□ 1.33
TPM3-208ENST00000341485 TDRD9Q8NDG6 1382 aaKnown RBP23.33■■□□□ 1.33
TPM3-208ENST00000341485 CARMIL1Q5VZK9 1371 aa23.33■■□□□ 1.32
TPM3-208ENST00000341485 ZEB1P37275 1124 aaPredicted RBP23.32■■□□□ 1.32
TPM3-208ENST00000341485 ABCA5Q8WWZ7 1642 aa23.32■■□□□ 1.32
TPM3-208ENST00000341485 GAPVD1Q14C86 1478 aa23.3■■□□□ 1.32
TPM3-208ENST00000341485 IFT140Q96RY7 1462 aa23.29■■□□□ 1.32
TPM3-208ENST00000341485 CUL7Q14999 1698 aa23.26■■□□□ 1.31
TPM3-208ENST00000341485 CLIP1P30622 1438 aa23.21■■□□□ 1.31
TPM3-208ENST00000341485 RANGAP1P46060 587 aaPredicted RBP23.18■■□□□ 1.3
TPM3-208ENST00000341485 PBRM1Q86U86 1689 aa23.18■■□□□ 1.3
TPM3-208ENST00000341485 AQRO60306 1485 aaKnown RBP eCLIP23.18■■□□□ 1.34e-7■■□□□ 12.7
TPM3-208ENST00000341485 ZNF608Q9ULD9 1512 aaPredicted RBP23.15■■□□□ 1.3
TPM3-208ENST00000341485 GRIN2BQ13224 1484 aa23.12■■□□□ 1.29
TPM3-208ENST00000341485 EIF4G3O43432 1585 aaKnown RBP23.09■■□□□ 1.29
TPM3-208ENST00000341485 TTBK1Q5TCY1 1321 aaPredicted RBP23.06■■□□□ 1.28
TPM3-208ENST00000341485 FHAD1B1AJZ9 1412 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms