RNA–Protein interactions for RNA: ENST00000271850.11

TPM3-201, Transcript of tropomyosin 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene TPM3, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-201ENST00000271850 AEBP2Q6ZN18 517 aaPredicted RBP26.16■■□□□ 1.78
TPM3-201ENST00000271850 CHIC1Q5VXU3 224 aa24.62■■□□□ 1.53
TPM3-201ENST00000271850 NISCHQ9Y2I1 1504 aa22.81■■□□□ 1.24
TPM3-201ENST00000271850 SENP3Q9H4L4 574 aaPredicted RBP22.53■■□□□ 1.2
TPM3-201ENST00000271850 PHF23Q9BUL5 403 aaPredicted RBP22.12■■□□□ 1.13
TPM3-201ENST00000271850 FOXD1Q16676 465 aa20.95■□□□□ 0.94
TPM3-201ENST00000271850 ABCC9O60706 1549 aa20.5■□□□□ 0.87
TPM3-201ENST00000271850 CCDC180Q9P1Z9 1646 aa20.43■□□□□ 0.86
TPM3-201ENST00000271850 POTEDQ86YR6 584 aa19.98■□□□□ 0.79
TPM3-201ENST00000271850 MSH5O43196 834 aa19.87■□□□□ 0.77
TPM3-201ENST00000271850 PIAS4Q8N2W9 510 aaPredicted RBP19.55■□□□□ 0.72
TPM3-201ENST00000271850 PLPPR3Q6T4P5 718 aa19.49■□□□□ 0.71
TPM3-201ENST00000271850 RB1CC1Q8TDY2 1594 aa19.44■□□□□ 0.7
TPM3-201ENST00000271850 DNAJC5BQ9UF47 199 aa19.34■□□□□ 0.69
TPM3-201ENST00000271850 NACADO15069 1562 aa19.32■□□□□ 0.68
TPM3-201ENST00000271850 PPP6R1Q9UPN7 881 aa19.24■□□□□ 0.67
TPM3-201ENST00000271850 ADRA2BP18089 450 aa19.2■□□□□ 0.66
TPM3-201ENST00000271850 DCAF8L2P0C7V8 631 aa19.12■□□□□ 0.65
TPM3-201ENST00000271850 UNC13AQ9UPW8 1703 aa19.1■□□□□ 0.65
TPM3-201ENST00000271850 PABPN1Q86U42 306 aaKnown RBP eCLIP19.08■□□□□ 0.64
TPM3-201ENST00000271850 MYO15BQ96JP2 1530 aa19.07■□□□□ 0.64
TPM3-201ENST00000271850 BICRAQ9NZM4 1560 aa19.01■□□□□ 0.63
TPM3-201ENST00000271850 ZCCHC6Q5VYS8 1495 aaKnown RBP18.92■□□□□ 0.62
TPM3-201ENST00000271850 DCAF1Q9Y4B6 1507 aa18.82■□□□□ 0.6
TPM3-201ENST00000271850 SCRIBQ14160 1630 aa18.66■□□□□ 0.58
TPM3-201ENST00000271850 SHROOM4Q9ULL8 1493 aa18.62■□□□□ 0.57
TPM3-201ENST00000271850 CC2D2AQ9P2K1 1620 aa18.52■□□□□ 0.56
TPM3-201ENST00000271850 EIF4G1Q04637 1599 aaKnown RBP18.48■□□□□ 0.55
TPM3-201ENST00000271850 CECR2Q9BXF3 1484 aa18.45■□□□□ 0.54
TPM3-201ENST00000271850 NCAPD3P42695 1498 aa17.87■□□□□ 0.45
TPM3-201ENST00000271850 ATAD2BQ9ULI0 1458 aa17.83■□□□□ 0.45
TPM3-201ENST00000271850 SMARCA4P51532 1647 aa17.8■□□□□ 0.44
TPM3-201ENST00000271850 DMRT2Q9Y5R5 561 aa17.76■□□□□ 0.43
TPM3-201ENST00000271850 SCAF1Q9H7N4 1312 aaKnown RBP17.72■□□□□ 0.43
TPM3-201ENST00000271850 HMGXB3Q12766 1538 aa17.72■□□□□ 0.43
TPM3-201ENST00000271850 MAPK8IP2Q13387 824 aaPredicted RBP17.72■□□□□ 0.43
TPM3-201ENST00000271850 SMARCA2P51531 1590 aa17.7■□□□□ 0.42
TPM3-201ENST00000271850 DNAJC5Q9H3Z4 198 aa17.67■□□□□ 0.42
TPM3-201ENST00000271850 BAZ1AQ9NRL2 1556 aaPredicted RBP17.66■□□□□ 0.42
TPM3-201ENST00000271850 NESP48681 1621 aa17.65■□□□□ 0.42
TPM3-201ENST00000271850 PEG3Q9GZU2 1588 aa17.65■□□□□ 0.42
TPM3-201ENST00000271850 CUX2O14529 1486 aa17.63■□□□□ 0.41
TPM3-201ENST00000271850 ERCC6Q03468 1493 aa17.61■□□□□ 0.41
TPM3-201ENST00000271850 MROH2BQ7Z745 1585 aa17.61■□□□□ 0.41
TPM3-201ENST00000271850 BAZ1BQ9UIG0 1483 aaKnown RBP17.6■□□□□ 0.41
TPM3-201ENST00000271850 THOC2Q8NI27 1593 aaKnown RBP17.48■□□□□ 0.39
TPM3-201ENST00000271850 LAMC3Q9Y6N6 1575 aa17.43■□□□□ 0.38
TPM3-201ENST00000271850 KIF21AQ7Z4S6 1674 aa17.39■□□□□ 0.37
TPM3-201ENST00000271850 WIZO95785 1651 aa17.38■□□□□ 0.37
TPM3-201ENST00000271850 CADPSQ9ULU8 1353 aa17.3■□□□□ 0.36
TPM3-201ENST00000271850 CACNB1Q02641 598 aaPredicted RBP17.3■□□□□ 0.36
TPM3-201ENST00000271850 PDS5BQ9NTI5 1447 aa17.3■□□□□ 0.36
TPM3-201ENST00000271850 RSF1Q96T23 1441 aaPredicted RBP17.21■□□□□ 0.35
TPM3-201ENST00000271850 MRC2Q9UBG0 1479 aa17.2■□□□□ 0.34
TPM3-201ENST00000271850 WDR62O43379 1518 aa17.2■□□□□ 0.34
TPM3-201ENST00000271850 CFTRP13569 1480 aa17.13■□□□□ 0.33
TPM3-201ENST00000271850 TOP2AP11388 1531 aaKnown RBP17.13■□□□□ 0.33
TPM3-201ENST00000271850 DCAF8L1A6NGE4 600 aa17.13■□□□□ 0.33
TPM3-201ENST00000271850 FANCD2Q9BXW9 1451 aa17.12■□□□□ 0.33
TPM3-201ENST00000271850 CEP164Q9UPV0 1460 aa17.11■□□□□ 0.33
TPM3-201ENST00000271850 URB2Q14146 1524 aaKnown RBP17.03■□□□□ 0.32
TPM3-201ENST00000271850 PPP4R3CPQ6ZMV5 832 aa16.99■□□□□ 0.31
TPM3-201ENST00000271850 CCDC88BA6NC98 1476 aa16.95■□□□□ 0.3
TPM3-201ENST00000271850 HOXD11P31277 338 aaPredicted RBP16.93■□□□□ 0.3
TPM3-201ENST00000271850 PRDM2Q13029 1718 aa16.92■□□□□ 0.3
TPM3-201ENST00000271850 RNF39Q9H2S5 420 aa16.86■□□□□ 0.29
TPM3-201ENST00000271850 TRIM41Q8WV44 630 aa16.84■□□□□ 0.29
TPM3-201ENST00000271850 ZNF608Q9ULD9 1512 aaPredicted RBP16.84■□□□□ 0.29
TPM3-201ENST00000271850 TOPBP1Q92547 1522 aa16.8■□□□□ 0.28
TPM3-201ENST00000271850 CNKSR2Q8WXI2 1034 aa16.8■□□□□ 0.28
TPM3-201ENST00000271850 IFT140Q96RY7 1462 aa16.77■□□□□ 0.28
TPM3-201ENST00000271850 OSCARQ8IYS5 282 aa16.76■□□□□ 0.27
TPM3-201ENST00000271850 RNF216Q9NWF9 866 aaPredicted RBP16.73■□□□□ 0.27
TPM3-201ENST00000271850 DNMBPQ6XZF7 1577 aa16.72■□□□□ 0.27
TPM3-201ENST00000271850 EIF4G3O43432 1585 aaKnown RBP16.7■□□□□ 0.26
TPM3-201ENST00000271850 TARBP1Q13395 1621 aaKnown RBP16.69■□□□□ 0.26
TPM3-201ENST00000271850 ABCC8Q09428 1581 aa16.66■□□□□ 0.26
TPM3-201ENST00000271850 RIMBP3CA6NJZ7 1639 aa16.66■□□□□ 0.26
TPM3-201ENST00000271850 RIMBP3BA6NNM3 1639 aa16.66■□□□□ 0.26
TPM3-201ENST00000271850 RIMBP3Q9UFD9 1639 aa16.66■□□□□ 0.26
TPM3-201ENST00000271850 C1QBPQ07021 282 aaKnown RBP16.65■□□□□ 0.26
TPM3-201ENST00000271850 POLA1P09884 1462 aaPredicted RBP16.65■□□□□ 0.26
TPM3-201ENST00000271850 AQRO60306 1485 aaKnown RBP eCLIP16.64■□□□□ 0.254e-7■■□□□ 12.7
TPM3-201ENST00000271850 ARHGEF11O15085 1522 aa16.6■□□□□ 0.25
TPM3-201ENST00000271850 RAD54L2Q9Y4B4 1467 aa16.6■□□□□ 0.25
TPM3-201ENST00000271850 CHD1O14646 1710 aa16.57■□□□□ 0.24
TPM3-201ENST00000271850 CUX1P39880 1505 aa16.54■□□□□ 0.24
TPM3-201ENST00000271850 FGD5Q6ZNL6 1462 aa16.53■□□□□ 0.24
TPM3-201ENST00000271850 TDRD9Q8NDG6 1382 aaKnown RBP16.51■□□□□ 0.23
TPM3-201ENST00000271850 SOGA1O94964 1423 aa16.51■□□□□ 0.23
TPM3-201ENST00000271850 ARAP1Q96P48 1450 aa16.47■□□□□ 0.23
TPM3-201ENST00000271850 SNAPC4Q5SXM2 1469 aa16.46■□□□□ 0.23
TPM3-201ENST00000271850 WDR97A6NE52 1622 aa16.45■□□□□ 0.22
TPM3-201ENST00000271850 CLASP1Q7Z460 1538 aa16.42■□□□□ 0.22
TPM3-201ENST00000271850 FBLN2P98095 1184 aa16.41■□□□□ 0.22
TPM3-201ENST00000271850 CYB5RLQ6IPT4 315 aa16.4■□□□□ 0.22
TPM3-201ENST00000271850 GRIN2BQ13224 1484 aa16.37■□□□□ 0.21
TPM3-201ENST00000271850 MAGI1Q96QZ7 1491 aaPredicted RBP16.37■□□□□ 0.21
TPM3-201ENST00000271850 ABCA5Q8WWZ7 1642 aa16.34■□□□□ 0.21
TPM3-201ENST00000271850 PBRM1Q86U86 1689 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms