Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.426e-6■■■■□ 21.9
UPF1Q92900 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.93■■□□□ 1.425e-8■■■■□ 21.9
UPF1Q92900 PIN1-203ENST00000585442 705 ntTSL 523.81■■□□□ 1.46e-6■■■■□ 21.9
UPF1Q92900 TM7SF2-212ENST00000528802 692 ntTSL 323.78■■□□□ 1.46e-6■■■■□ 21.9
UPF1Q92900 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.57■■□□□ 1.366e-6■■■■□ 21.9
UPF1Q92900 PIN1-205ENST00000586352 755 ntTSL 323.51■■□□□ 1.356e-6■■■■□ 21.9
UPF1Q92900 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC23.51■■□□□ 1.356e-6■■■■□ 21.9
UPF1Q92900 CTDP1-205ENST00000590599 1762 ntTSL 223.47■■□□□ 1.356e-6■■■■□ 21.9
UPF1Q92900 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC23.42■■□□□ 1.346e-6■■■■□ 21.9
UPF1Q92900 TM7SF2-206ENST00000526048 1168 ntTSL 522.68■■□□□ 1.226e-6■■■■□ 21.9
UPF1Q92900 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC22.66■■□□□ 1.226e-6■■■■□ 21.9
UPF1Q92900 CPLX1-204ENST00000506404 569 ntTSL 222.6■■□□□ 1.216e-6■■■■□ 21.9
UPF1Q92900 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC22.4■■□□□ 1.185e-6■■■■□ 21.9
UPF1Q92900 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.95■■□□□ 1.16e-6■■■■□ 21.9
UPF1Q92900 PPFIA3-213ENST00000602905 799 ntTSL 221.6■■□□□ 1.056e-6■■■■□ 21.9
UPF1Q92900 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.57■■□□□ 1.045e-8■■■■□ 21.9
UPF1Q92900 TM9SF1-212ENST00000532632 505 ntTSL 321.54■■□□□ 1.046e-6■■■■□ 21.9
UPF1Q92900 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.37■■□□□ 1.015e-8■■■■□ 21.9
UPF1Q92900 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.966e-6■■■■□ 21.9
UPF1Q92900 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.89■□□□□ 0.936e-6■■■■□ 21.9
UPF1Q92900 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.72■□□□□ 0.915e-8■■■■□ 21.9
UPF1Q92900 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.846e-6■■■■□ 21.9
UPF1Q92900 KLC1-216ENST00000554228 2555 ntTSL 519.91■□□□□ 0.786e-6■■■■□ 21.9
UPF1Q92900 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.9■□□□□ 0.782e-11■■■■□ 21.9
UPF1Q92900 TAZ-211ENST00000494912 2286 ntTSL 219.82■□□□□ 0.762e-9■■■■□ 21.9
UPF1Q92900 PIN1-208ENST00000589058 536 ntTSL 319.8■□□□□ 0.766e-6■■■■□ 21.9
UPF1Q92900 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC19.28■□□□□ 0.686e-6■■■■□ 21.9
UPF1Q92900 KLC1-210ENST00000537046 875 ntTSL 319.21■□□□□ 0.676e-6■■■■□ 21.9
UPF1Q92900 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.99■□□□□ 0.635e-8■■■■□ 21.9
UPF1Q92900 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.64■□□□□ 0.586e-6■■■■□ 21.9
UPF1Q92900 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC18.62■□□□□ 0.576e-6■■■■□ 21.9
UPF1Q92900 NPRL3-213ENST00000621703 2812 ntTSL 1 (best)18.43■□□□□ 0.544e-12■■■■□ 21.9
UPF1Q92900 TM9SF1-208ENST00000529332 2107 ntTSL 518.12■□□□□ 0.496e-6■■■■□ 21.9
UPF1Q92900 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.464e-12■■■■□ 21.9
UPF1Q92900 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.432e-11■■■■□ 21.9
UPF1Q92900 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.391e-8■■■■□ 21.9
UPF1Q92900 KLC1-222ENST00000557143 701 ntTSL 217.03■□□□□ 0.326e-6■■■■□ 21.9
UPF1Q92900 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.316e-6■■■■□ 21.9
UPF1Q92900 CTDP1-207ENST00000591598 3228 ntTSL 1 (best)16.97■□□□□ 0.316e-6■■■■□ 21.9
UPF1Q92900 NPRL3-214ENST00000622194 2981 ntTSL 516.71■□□□□ 0.274e-12■■■■□ 21.9
UPF1Q92900 PPFIA3-206ENST00000602655 3493 ntTSL 1 (best)16.68■□□□□ 0.266e-6■■■■□ 21.9
UPF1Q92900 PRPS1-201ENST00000372418 942 ntTSL 3 BASIC16.6■□□□□ 0.259e-8■■■■□ 21.9
UPF1Q92900 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.23■□□□□ 0.196e-6■■■■□ 21.9
UPF1Q92900 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.8■□□□□ 0.124e-12■■■■□ 21.9
UPF1Q92900 AL136295.1-201ENST00000530611 2740 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.116e-6■■■■□ 21.9
UPF1Q92900 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.034e-12■■■■□ 21.9
UPF1Q92900 CCT6A-204ENST00000466479 745 ntTSL 214.72□□□□□ -0.059e-12■■■■□ 21.9
UPF1Q92900 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.086e-6■■■■□ 21.9
UPF1Q92900 THUMPD1-206ENST00000636554 2567 ntTSL 514.29□□□□□ -0.126e-6■■■■□ 21.9
UPF1Q92900 C1QTNF6-201ENST00000337843 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.166e-6■■■■□ 21.9
UPF1Q92900 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.26e-6■■■■□ 21.9
UPF1Q92900 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.26e-7■■■■□ 21.9
UPF1Q92900 TM7SF2-210ENST00000527968 544 ntTSL 313.68□□□□□ -0.226e-6■■■■□ 21.9
UPF1Q92900 THUMPD1-202ENST00000396083 2624 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.236e-6■■■■□ 21.9
UPF1Q92900 DNAJB6-211ENST00000459889 7992 ntTSL 1 (best)13.56□□□□□ -0.246e-7■■■■□ 21.9
UPF1Q92900 SIRPA-204ENST00000622179 4570 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.296e-6■■■■□ 21.9
UPF1Q92900 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.36e-6■■■■□ 21.9
UPF1Q92900 NPRL3-210ENST00000610509 2917 ntTSL 212.62□□□□□ -0.394e-12■■■■□ 21.9
UPF1Q92900 RNF213-201ENST00000319921 5316 ntTSL 1 (best) BASIC12.2□□□□□ -0.464e-11■■■■□ 21.9
UPF1Q92900 SIRPA-201ENST00000356025 3867 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.466e-6■■■■□ 21.9
UPF1Q92900 UHRF1-201ENST00000612630 4309 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.476e-6■■■■□ 21.9
UPF1Q92900 RNF213-207ENST00000559070 4644 ntTSL 1 (best)12□□□□□ -0.494e-11■■■■□ 21.9
UPF1Q92900 UHRF1-205ENST00000620565 3965 ntTSL 1 (best) BASIC11.89□□□□□ -0.516e-6■■■■□ 21.9
UPF1Q92900 C1QTNF6-205ENST00000470655 5003 ntTSL 211.87□□□□□ -0.516e-6■■■■□ 21.9
UPF1Q92900 UHRF1-207ENST00000624301 3898 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.536e-6■■■■□ 21.9
UPF1Q92900 C1QTNF6-206ENST00000493023 3296 ntTSL 1 (best)11.59□□□□□ -0.556e-6■■■■□ 21.9
UPF1Q92900 PLAC8-201ENST00000311507 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.576e-6■■■■□ 21.9
UPF1Q92900 THUMPD1-201ENST00000381337 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.646e-6■■■■□ 21.9
UPF1Q92900 TRIM44-201ENST00000299413 12964 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.831e-8■■■■□ 21.9
UPF1Q92900 AP4S1-204ENST00000542754 4243 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.876e-6■■■■□ 21.9
UPF1Q92900 TMEM87A-210ENST00000568067 815 ntTSL 29.33□□□□□ -0.922e-6■■■■□ 21.9
UPF1Q92900 DCTN4-203ENST00000447998 4208 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.938e-8■■■■□ 21.9
UPF1Q92900 METTL8-201ENST00000375258 8203 ntTSL 5 BASIC9.07□□□□□ -0.966e-6■■■■□ 21.9
UPF1Q92900 AP4S1-211ENST00000616371 4595 ntAPPRIS P1 TSL 2 BASIC8.95□□□□□ -0.986e-6■■■■□ 21.9
UPF1Q92900 TMEM87A-203ENST00000448392 3049 ntTSL 1 (best) BASIC8.68□□□□□ -1.021e-6■■■■□ 21.9
UPF1Q92900 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC8.34□□□□□ -1.075e-8■■■■□ 21.9
UPF1Q92900 TMEM87A-202ENST00000389834 3109 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.091e-6■■■■□ 21.9
UPF1Q92900 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC8.11□□□□□ -1.116e-6■■■■□ 21.9
UPF1Q92900 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC8.1□□□□□ -1.116e-6■■■■□ 21.9
UPF1Q92900 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC6.91□□□□□ -1.38e-8■■■■□ 21.9
UPF1Q92900 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.196e-7■■■■□ 21.9
UPF1Q92900 HS3ST3B1-202ENST00000466596 2808 ntTSL 214.56□□□□□ -0.086e-7■■■■□ 21.9
UPF1Q92900 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.598e-14■■■■□ 21.9
UPF1Q92900 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.218e-7■■■■□ 21.9
UPF1Q92900 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.65□□□□□ -0.068e-7■■■■□ 21.9
UPF1Q92900 EPHB4-206ENST00000487222 5058 ntTSL 1 (best)14.53□□□□□ -0.088e-7■■■■□ 21.9
UPF1Q92900 EPHB4-202ENST00000360620 3789 ntTSL 1 (best) BASIC11.69□□□□□ -0.548e-7■■■■□ 21.9
UPF1Q92900 GDE1-203ENST00000564172 2238 ntTSL 1 (best)20.99■□□□□ 0.955e-7■■■■□ 21.9
UPF1Q92900 RINL-203ENST00000593424 1810 ntAPPRIS ALT2 TSL 219.23■□□□□ 0.671e-7■■■■□ 21.9
UPF1Q92900 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC21.8■■□□□ 1.087e-15■■■■□ 21.9
UPF1Q92900 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.03■□□□□ 0.967e-15■■■■□ 21.9
UPF1Q92900 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.697e-15■■■■□ 21.9
UPF1Q92900 RMND5B-209ENST00000513162 4250 ntTSL 211.31□□□□□ -0.62e-6■■■■□ 21.9
UPF1Q92900 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC12.82□□□□□ -0.361e-9■■■■□ 21.9
UPF1Q92900 TMEM141-203ENST00000479737 491 ntTSL 223.81■■□□□ 1.45e-7■■■■□ 21.8
UPF1Q92900 TMBIM6-219ENST00000549471 484 ntTSL 28.83□□□□□ -12e-75■■■■□ 21.8
UPF1Q92900 FAM136A-204ENST00000450256 936 ntTSL 230.61■■■□□ 2.495e-15■■■■□ 21.8
UPF1Q92900 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.016e-15■■■■□ 21.8
UPF1Q92900 FAM136A-205ENST00000460307 2398 ntTSL 1 (best)21.83■■□□□ 1.086e-15■■■■□ 21.8
UPF1Q92900 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC26.61■■□□□ 1.851e-35■■■■□ 21.8
Retrieved 100 of 15,879 protein–RNA pairs in 252.1 ms