RNA–Protein interactions for RNA: ENST00000602655.5

PPFIA3-206, Transcript of PTPRF interacting protein alpha 3, humanhuman

TSL 1 (best)

Gene PPFIA3, Length 3,493 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA3-206ENST00000602655 NISCHQ9Y2I1 1504 aa31.2■■■□□ 2.58
PPFIA3-206ENST00000602655 DCAF8L2P0C7V8 631 aa27.91■■■□□ 2.06
PPFIA3-206ENST00000602655 SHROOM4Q9ULL8 1493 aa27.42■■□□□ 1.98
PPFIA3-206ENST00000602655 SUPT5HO00267 1087 aaKnown RBP26.64■■□□□ 1.85
PPFIA3-206ENST00000602655 ABCC9O60706 1549 aa26.32■■□□□ 1.8
PPFIA3-206ENST00000602655 CCDC180Q9P1Z9 1646 aa26.24■■□□□ 1.79
PPFIA3-206ENST00000602655 ZCCHC6Q5VYS8 1495 aaKnown RBP26.08■■□□□ 1.77
PPFIA3-206ENST00000602655 PELP1Q8IZL8 1130 aaKnown RBP25.53■■□□□ 1.68
PPFIA3-206ENST00000602655 HRCP23327 699 aa25.48■■□□□ 1.67
PPFIA3-206ENST00000602655 PABPN1Q86U42 306 aaKnown RBP eCLIP25.45■■□□□ 1.675e-6■■■■□ 22.2
PPFIA3-206ENST00000602655 SCRIBQ14160 1630 aa25.43■■□□□ 1.66
PPFIA3-206ENST00000602655 PPARGC1BQ86YN6 1023 aaKnown RBP25.28■■□□□ 1.64
PPFIA3-206ENST00000602655 EHMT2Q96KQ7 1210 aa25.16■■□□□ 1.62
PPFIA3-206ENST00000602655 PCGF6Q9BYE7 350 aa25.1■■□□□ 1.61
PPFIA3-206ENST00000602655 DCAF1Q9Y4B6 1507 aa25■■□□□ 1.59
PPFIA3-206ENST00000602655 CHIC1Q5VXU3 224 aa24.87■■□□□ 1.57
PPFIA3-206ENST00000602655 FAM9AQ8IZU1 332 aaPredicted RBP24.87■■□□□ 1.57
PPFIA3-206ENST00000602655 CECR2Q9BXF3 1484 aa24.82■■□□□ 1.56
PPFIA3-206ENST00000602655 NACADO15069 1562 aa24.79■■□□□ 1.56
PPFIA3-206ENST00000602655 RB1CC1Q8TDY2 1594 aa24.72■■□□□ 1.55
PPFIA3-206ENST00000602655 MYT1Q01538 1121 aa24.7■■□□□ 1.54
PPFIA3-206ENST00000602655 RSF1Q96T23 1441 aaPredicted RBP24.65■■□□□ 1.54
PPFIA3-206ENST00000602655 LOC105371045A0A1W2PR82 267 aa24.6■■□□□ 1.53
PPFIA3-206ENST00000602655 TRIM41Q8WV44 630 aa24.52■■□□□ 1.52
PPFIA3-206ENST00000602655 SCAF1Q9H7N4 1312 aaKnown RBP24.52■■□□□ 1.52
PPFIA3-206ENST00000602655 MYO15BQ96JP2 1530 aa24.45■■□□□ 1.5
PPFIA3-206ENST00000602655 MROH2BQ7Z745 1585 aa24.44■■□□□ 1.5
PPFIA3-206ENST00000602655 WIZO95785 1651 aa24.21■■□□□ 1.47
PPFIA3-206ENST00000602655 RANGAP1P46060 587 aaPredicted RBP24.06■■□□□ 1.44
PPFIA3-206ENST00000602655 TTBK1Q5TCY1 1321 aaPredicted RBP24.02■■□□□ 1.44
PPFIA3-206ENST00000602655 UNC13AQ9UPW8 1703 aa24■■□□□ 1.43
PPFIA3-206ENST00000602655 BAZ1AQ9NRL2 1556 aaPredicted RBP23.98■■□□□ 1.43
PPFIA3-206ENST00000602655 BICRAQ9NZM4 1560 aa23.97■■□□□ 1.43
PPFIA3-206ENST00000602655 GTF3C3Q9Y5Q9 886 aa23.82■■□□□ 1.4
PPFIA3-206ENST00000602655 SMARCA4P51532 1647 aa23.82■■□□□ 1.4
PPFIA3-206ENST00000602655 CCDC88BA6NC98 1476 aa23.81■■□□□ 1.4
PPFIA3-206ENST00000602655 TRIM26Q12899 539 aaPredicted RBP23.78■■□□□ 1.4
PPFIA3-206ENST00000602655 ZEB1P37275 1124 aaPredicted RBP23.76■■□□□ 1.39
PPFIA3-206ENST00000602655 ACIN1Q9UKV3 1341 aaKnown RBP23.76■■□□□ 1.39
PPFIA3-206ENST00000602655 NEUROD1Q13562 356 aa23.74■■□□□ 1.39
PPFIA3-206ENST00000602655 UBTFP17480 764 aaKnown RBP23.7■■□□□ 1.38
PPFIA3-206ENST00000602655 ABCC8Q09428 1581 aa23.69■■□□□ 1.38
PPFIA3-206ENST00000602655 BAZ1BQ9UIG0 1483 aaKnown RBP23.68■■□□□ 1.38
PPFIA3-206ENST00000602655 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
PPFIA3-206ENST00000602655 ATAD2BQ9ULI0 1458 aa23.63■■□□□ 1.37
PPFIA3-206ENST00000602655 CENPBP07199 599 aaPredicted RBP23.62■■□□□ 1.37
PPFIA3-206ENST00000602655 TOP2AP11388 1531 aaKnown RBP23.55■■□□□ 1.36
PPFIA3-206ENST00000602655 SMARCA2P51531 1590 aa23.47■■□□□ 1.35
PPFIA3-206ENST00000602655 SOGA1O94964 1423 aa23.44■■□□□ 1.34
PPFIA3-206ENST00000602655 EIF4G1Q04637 1599 aaKnown RBP23.43■■□□□ 1.34
PPFIA3-206ENST00000602655 CSRNP3Q8WYN3 585 aa23.35■■□□□ 1.33
PPFIA3-206ENST00000602655 RUSC2Q8N2Y8 1516 aa23.35■■□□□ 1.33
PPFIA3-206ENST00000602655 YTHDC1Q96MU7 727 aaKnown RBP23.32■■□□□ 1.32
PPFIA3-206ENST00000602655 WRNQ14191 1432 aaPredicted RBP eCLIP23.31■■□□□ 1.32
PPFIA3-206ENST00000602655 BCL11AQ9H165 835 aa23.22■■□□□ 1.31
PPFIA3-206ENST00000602655 DIEXFQ68CQ4 756 aaKnown RBP23.19■■□□□ 1.3
PPFIA3-206ENST00000602655 ATP1B4Q9UN42 357 aaPredicted RBP23.13■■□□□ 1.29
PPFIA3-206ENST00000602655 NCAPD3P42695 1498 aa23.13■■□□□ 1.29
PPFIA3-206ENST00000602655 CC2D2AQ9P2K1 1620 aa23.12■■□□□ 1.29
PPFIA3-206ENST00000602655 CCER1Q8TC90 406 aaPredicted RBP23.08■■□□□ 1.29
PPFIA3-206ENST00000602655 NESP48681 1621 aa23.07■■□□□ 1.28
PPFIA3-206ENST00000602655 P3H3Q8IVL6 736 aa23.05■■□□□ 1.28
PPFIA3-206ENST00000602655 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.02■■□□□ 1.28
PPFIA3-206ENST00000602655 PEG3Q9GZU2 1588 aa22.97■■□□□ 1.27
PPFIA3-206ENST00000602655 SYNJ1O43426 1573 aa22.97■■□□□ 1.27
PPFIA3-206ENST00000602655 CADPSQ9ULU8 1353 aa22.97■■□□□ 1.27
PPFIA3-206ENST00000602655 APLP2Q06481 763 aa22.94■■□□□ 1.26
PPFIA3-206ENST00000602655 CEP162Q5TB80 1403 aa22.84■■□□□ 1.25
PPFIA3-206ENST00000602655 HNRNPUL2Q1KMD3 747 aaKnown RBP22.83■■□□□ 1.25
PPFIA3-206ENST00000602655 HMGXB3Q12766 1538 aa22.8■■□□□ 1.24
PPFIA3-206ENST00000602655 ARID3CA6NKF2 412 aa22.79■■□□□ 1.24
PPFIA3-206ENST00000602655 CFTRP13569 1480 aa22.79■■□□□ 1.24
PPFIA3-206ENST00000602655 ITGAEP38570 1179 aa22.78■■□□□ 1.24
PPFIA3-206ENST00000602655 FBLN2P98095 1184 aa22.77■■□□□ 1.24
PPFIA3-206ENST00000602655 RAPGEF2Q9Y4G8 1499 aa22.77■■□□□ 1.24
PPFIA3-206ENST00000602655 ANP32EQ9BTT0 268 aa22.76■■□□□ 1.23
PPFIA3-206ENST00000602655 CUX2O14529 1486 aa22.76■■□□□ 1.23
PPFIA3-206ENST00000602655 TDRD9Q8NDG6 1382 aaKnown RBP22.75■■□□□ 1.23
PPFIA3-206ENST00000602655 FANCD2Q9BXW9 1451 aa22.74■■□□□ 1.23
PPFIA3-206ENST00000602655 RAD54L2Q9Y4B4 1467 aa22.72■■□□□ 1.23
PPFIA3-206ENST00000602655 CUX1P39880 1505 aa22.72■■□□□ 1.23
PPFIA3-206ENST00000602655 GOLGA3Q08378 1498 aa22.68■■□□□ 1.22
PPFIA3-206ENST00000602655 TNIKQ9UKE5 1360 aa22.66■■□□□ 1.22
PPFIA3-206ENST00000602655 CLIP1P30622 1438 aa22.66■■□□□ 1.22
PPFIA3-206ENST00000602655 KIF27Q86VH2 1401 aa22.65■■□□□ 1.22
PPFIA3-206ENST00000602655 PRKCSHP14314 528 aaPredicted RBP22.64■■□□□ 1.22
PPFIA3-206ENST00000602655 FGD5Q6ZNL6 1462 aa22.6■■□□□ 1.21
PPFIA3-206ENST00000602655 EEA1Q15075 1411 aa22.59■■□□□ 1.21
PPFIA3-206ENST00000602655 CEP164Q9UPV0 1460 aa22.58■■□□□ 1.21
PPFIA3-206ENST00000602655 CARMIL1Q5VZK9 1371 aa22.53■■□□□ 1.2
PPFIA3-206ENST00000602655 TOP2BQ02880 1626 aa22.5■■□□□ 1.19
PPFIA3-206ENST00000602655 IGF1RP08069 1367 aa22.5■■□□□ 1.19
PPFIA3-206ENST00000602655 MIER1Q8N108 512 aa22.49■■□□□ 1.19
PPFIA3-206ENST00000602655 KANK4Q5T7N3 995 aaPredicted RBP22.47■■□□□ 1.19
PPFIA3-206ENST00000602655 PDS5BQ9NTI5 1447 aa22.47■■□□□ 1.19
PPFIA3-206ENST00000602655 ERCC6Q03468 1493 aa22.47■■□□□ 1.19
PPFIA3-206ENST00000602655 ZNF316A6NFI3 1004 aaPredicted RBP22.46■■□□□ 1.19
PPFIA3-206ENST00000602655 POLA1P09884 1462 aaPredicted RBP22.38■■□□□ 1.17
PPFIA3-206ENST00000602655 AQRO60306 1485 aaKnown RBP eCLIP22.38■■□□□ 1.173e-9■■■■■ 38.1
PPFIA3-206ENST00000602655 TOPBP1Q92547 1522 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms