RNA–Protein interactions for RNA: ENST00000261789.8

TM9SF1-201, Transcript of transmembrane 9 superfamily member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-201ENST00000261789 NISCHQ9Y2I1 1504 aa33.72■■■□□ 2.99
TM9SF1-201ENST00000261789 SHROOM4Q9ULL8 1493 aa29.06■■■□□ 2.24
TM9SF1-201ENST00000261789 CCDC180Q9P1Z9 1646 aa28.95■■■□□ 2.23
TM9SF1-201ENST00000261789 SUPT5HO00267 1087 aaKnown RBP28.52■■■□□ 2.16
TM9SF1-201ENST00000261789 ZCCHC6Q5VYS8 1495 aaKnown RBP28.52■■■□□ 2.16
TM9SF1-201ENST00000261789 DCAF8L2P0C7V8 631 aa28.23■■■□□ 2.11
TM9SF1-201ENST00000261789 CHIC1Q5VXU3 224 aa27.66■■■□□ 2.02
TM9SF1-201ENST00000261789 MYO15BQ96JP2 1530 aa27.61■■■□□ 2.01
TM9SF1-201ENST00000261789 DCAF1Q9Y4B6 1507 aa27.57■■■□□ 2
TM9SF1-201ENST00000261789 ABCC9O60706 1549 aa27.19■■□□□ 1.94
TM9SF1-201ENST00000261789 LOC105371045A0A1W2PR82 267 aa26.97■■□□□ 1.91
TM9SF1-201ENST00000261789 PCGF6Q9BYE7 350 aa26.97■■□□□ 1.91
TM9SF1-201ENST00000261789 SCRIBQ14160 1630 aa26.95■■□□□ 1.9
TM9SF1-201ENST00000261789 HRCP23327 699 aa26.9■■□□□ 1.9
TM9SF1-201ENST00000261789 NACADO15069 1562 aa26.9■■□□□ 1.9
TM9SF1-201ENST00000261789 RSF1Q96T23 1441 aaPredicted RBP26.77■■□□□ 1.88
TM9SF1-201ENST00000261789 RB1CC1Q8TDY2 1594 aa26.6■■□□□ 1.85
TM9SF1-201ENST00000261789 PPARGC1BQ86YN6 1023 aaKnown RBP26.51■■□□□ 1.83
TM9SF1-201ENST00000261789 TRIM41Q8WV44 630 aa26.47■■□□□ 1.83
TM9SF1-201ENST00000261789 CECR2Q9BXF3 1484 aa26.42■■□□□ 1.82
TM9SF1-201ENST00000261789 FAM9AQ8IZU1 332 aaPredicted RBP26.39■■□□□ 1.82
TM9SF1-201ENST00000261789 TRIM26Q12899 539 aaPredicted RBP26.31■■□□□ 1.8
TM9SF1-201ENST00000261789 MROH2BQ7Z745 1585 aa26.29■■□□□ 1.8
TM9SF1-201ENST00000261789 EHMT2Q96KQ7 1210 aa26.28■■□□□ 1.8
TM9SF1-201ENST00000261789 UNC13AQ9UPW8 1703 aa26.19■■□□□ 1.78
TM9SF1-201ENST00000261789 WIZO95785 1651 aa26.17■■□□□ 1.78
TM9SF1-201ENST00000261789 BAZ1AQ9NRL2 1556 aaPredicted RBP25.9■■□□□ 1.74
TM9SF1-201ENST00000261789 BICRAQ9NZM4 1560 aa25.9■■□□□ 1.74
TM9SF1-201ENST00000261789 EIF4G1Q04637 1599 aaKnown RBP25.74■■□□□ 1.71
TM9SF1-201ENST00000261789 PABPN1Q86U42 306 aaKnown RBP eCLIP25.7■■□□□ 1.7
TM9SF1-201ENST00000261789 SMARCA4P51532 1647 aa25.67■■□□□ 1.7
TM9SF1-201ENST00000261789 ABCC8Q09428 1581 aa25.66■■□□□ 1.7
TM9SF1-201ENST00000261789 ZEB1P37275 1124 aaPredicted RBP25.65■■□□□ 1.7
TM9SF1-201ENST00000261789 TOP2AP11388 1531 aaKnown RBP25.65■■□□□ 1.7
TM9SF1-201ENST00000261789 CCDC88BA6NC98 1476 aa25.64■■□□□ 1.7
TM9SF1-201ENST00000261789 SMARCA2P51531 1590 aa25.56■■□□□ 1.68
TM9SF1-201ENST00000261789 SOGA1O94964 1423 aa25.43■■□□□ 1.66
TM9SF1-201ENST00000261789 TTBK1Q5TCY1 1321 aaPredicted RBP25.42■■□□□ 1.66
TM9SF1-201ENST00000261789 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.39■■□□□ 1.65
TM9SF1-201ENST00000261789 RUSC2Q8N2Y8 1516 aa25.33■■□□□ 1.65
TM9SF1-201ENST00000261789 CEP162Q5TB80 1403 aa25.29■■□□□ 1.64
TM9SF1-201ENST00000261789 PEG3Q9GZU2 1588 aa25.28■■□□□ 1.64
TM9SF1-201ENST00000261789 CCER1Q8TC90 406 aaPredicted RBP25.25■■□□□ 1.63
TM9SF1-201ENST00000261789 CSRNP3Q8WYN3 585 aa25.25■■□□□ 1.63
TM9SF1-201ENST00000261789 UBTFP17480 764 aaKnown RBP25.24■■□□□ 1.63
TM9SF1-201ENST00000261789 TNIKQ9UKE5 1360 aa25.19■■□□□ 1.62
TM9SF1-201ENST00000261789 WRNQ14191 1432 aaPredicted RBP eCLIP25.18■■□□□ 1.62
TM9SF1-201ENST00000261789 ATAD2BQ9ULI0 1458 aa25.12■■□□□ 1.61
TM9SF1-201ENST00000261789 EEA1Q15075 1411 aa25.11■■□□□ 1.61
TM9SF1-201ENST00000261789 GOLGA3Q08378 1498 aa25.03■■□□□ 1.6
TM9SF1-201ENST00000261789 SYNJ1O43426 1573 aa25.03■■□□□ 1.6
TM9SF1-201ENST00000261789 BAZ1BQ9UIG0 1483 aaKnown RBP24.96■■□□□ 1.59
TM9SF1-201ENST00000261789 SCAF1Q9H7N4 1312 aaKnown RBP24.89■■□□□ 1.58
TM9SF1-201ENST00000261789 CEP164Q9UPV0 1460 aa24.87■■□□□ 1.57
TM9SF1-201ENST00000261789 RANGAP1P46060 587 aaPredicted RBP24.87■■□□□ 1.57
TM9SF1-201ENST00000261789 NCAPD3P42695 1498 aa24.85■■□□□ 1.57
TM9SF1-201ENST00000261789 HMGXB3Q12766 1538 aa24.83■■□□□ 1.57
TM9SF1-201ENST00000261789 CLIP1P30622 1438 aa24.8■■□□□ 1.56
TM9SF1-201ENST00000261789 KIF21BO75037 1637 aa24.8■■□□□ 1.56
TM9SF1-201ENST00000261789 RAPGEF2Q9Y4G8 1499 aa24.78■■□□□ 1.56
TM9SF1-201ENST00000261789 DIEXFQ68CQ4 756 aaKnown RBP24.77■■□□□ 1.56
TM9SF1-201ENST00000261789 HNRNPUL2Q1KMD3 747 aaKnown RBP24.76■■□□□ 1.55
TM9SF1-201ENST00000261789 VPS8Q8N3P4 1428 aa24.66■■□□□ 1.54
TM9SF1-201ENST00000261789 TOP2BQ02880 1626 aa24.64■■□□□ 1.53
TM9SF1-201ENST00000261789 CC2D2AQ9P2K1 1620 aa24.62■■□□□ 1.53
TM9SF1-201ENST00000261789 APLP2Q06481 763 aa24.62■■□□□ 1.53
TM9SF1-201ENST00000261789 NEUROD1Q13562 356 aa24.62■■□□□ 1.53
TM9SF1-201ENST00000261789 ACIN1Q9UKV3 1341 aaKnown RBP24.58■■□□□ 1.52
TM9SF1-201ENST00000261789 ZNF316A6NFI3 1004 aaPredicted RBP24.54■■□□□ 1.52
TM9SF1-201ENST00000261789 BIVM-ERCC5R4GMW8 1640 aa24.52■■□□□ 1.52
TM9SF1-201ENST00000261789 CUX1P39880 1505 aa24.45■■□□□ 1.5
TM9SF1-201ENST00000261789 PRXQ9BXM0 1461 aa24.45■■□□□ 1.5
TM9SF1-201ENST00000261789 KANK4Q5T7N3 995 aaPredicted RBP24.39■■□□□ 1.49
TM9SF1-201ENST00000261789 ARAP1Q96P48 1450 aa24.38■■□□□ 1.49
TM9SF1-201ENST00000261789 ERICH3Q5RHP9 1530 aa24.38■■□□□ 1.49
TM9SF1-201ENST00000261789 CFTRP13569 1480 aa24.38■■□□□ 1.49
TM9SF1-201ENST00000261789 CENPBP07199 599 aaPredicted RBP24.37■■□□□ 1.49
TM9SF1-201ENST00000261789 GTF3C3Q9Y5Q9 886 aa24.36■■□□□ 1.49
TM9SF1-201ENST00000261789 KIF27Q86VH2 1401 aa24.33■■□□□ 1.48
TM9SF1-201ENST00000261789 YTHDC1Q96MU7 727 aaKnown RBP24.31■■□□□ 1.48
TM9SF1-201ENST00000261789 MIER1Q8N108 512 aa24.28■■□□□ 1.48
TM9SF1-201ENST00000261789 PRDM2Q13029 1718 aa24.26■■□□□ 1.47
TM9SF1-201ENST00000261789 CADPSQ9ULU8 1353 aa24.22■■□□□ 1.47
TM9SF1-201ENST00000261789 PELP1Q8IZL8 1130 aaKnown RBP24.18■■□□□ 1.46
TM9SF1-201ENST00000261789 ARHGAP35Q9NRY4 1499 aa24.18■■□□□ 1.46
TM9SF1-201ENST00000261789 DHX57Q6P158 1386 aaKnown RBP24.17■■□□□ 1.46
TM9SF1-201ENST00000261789 CUX2O14529 1486 aa24.14■■□□□ 1.45
TM9SF1-201ENST00000261789 ITGAEP38570 1179 aa24.12■■□□□ 1.45
TM9SF1-201ENST00000261789 IGF1RP08069 1367 aa24.11■■□□□ 1.45
TM9SF1-201ENST00000261789 RRBP1Q9P2E9 1410 aaKnown RBP24.08■■□□□ 1.45
TM9SF1-201ENST00000261789 CCNB3Q8WWL7 1395 aa24.03■■□□□ 1.44
TM9SF1-201ENST00000261789 CLSPNQ9HAW4 1339 aa24.02■■□□□ 1.44
TM9SF1-201ENST00000261789 DNAJC5BQ9UF47 199 aa24.02■■□□□ 1.44
TM9SF1-201ENST00000261789 FGD5Q6ZNL6 1462 aa24.02■■□□□ 1.43
TM9SF1-201ENST00000261789 CARMIL1Q5VZK9 1371 aa24■■□□□ 1.43
TM9SF1-201ENST00000261789 NESP48681 1621 aa23.99■■□□□ 1.43
TM9SF1-201ENST00000261789 FANCD2Q9BXW9 1451 aa23.96■■□□□ 1.43
TM9SF1-201ENST00000261789 P3H3Q8IVL6 736 aa23.96■■□□□ 1.43
TM9SF1-201ENST00000261789 LAMC3Q9Y6N6 1575 aa23.95■■□□□ 1.42
TM9SF1-201ENST00000261789 ATP1B4Q9UN42 357 aaPredicted RBP23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms