RNA–Protein interactions for RNA: ENST00000396854.8

TM9SF1-202, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 1 (best) BASIC

Gene TM9SF1, Length 2,055 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-202ENST00000396854 NISCHQ9Y2I1 1504 aa34.71■■■■□ 3.15
TM9SF1-202ENST00000396854 CCDC180Q9P1Z9 1646 aa30.64■■■□□ 2.5
TM9SF1-202ENST00000396854 ABCC9O60706 1549 aa29.21■■■□□ 2.27
TM9SF1-202ENST00000396854 ZCCHC6Q5VYS8 1495 aaKnown RBP29.08■■■□□ 2.25
TM9SF1-202ENST00000396854 DCAF1Q9Y4B6 1507 aa28.79■■■□□ 2.2
TM9SF1-202ENST00000396854 MYO15BQ96JP2 1530 aa28.66■■■□□ 2.18
TM9SF1-202ENST00000396854 NACADO15069 1562 aa28.59■■■□□ 2.17
TM9SF1-202ENST00000396854 DCAF8L2P0C7V8 631 aa28.58■■■□□ 2.17
TM9SF1-202ENST00000396854 RB1CC1Q8TDY2 1594 aa28.45■■■□□ 2.14
TM9SF1-202ENST00000396854 SCRIBQ14160 1630 aa27.95■■■□□ 2.06
TM9SF1-202ENST00000396854 UNC13AQ9UPW8 1703 aa27.91■■■□□ 2.06
TM9SF1-202ENST00000396854 SHROOM4Q9ULL8 1493 aa27.74■■■□□ 2.03
TM9SF1-202ENST00000396854 BICRAQ9NZM4 1560 aa27.59■■■□□ 2.01
TM9SF1-202ENST00000396854 PABPN1Q86U42 306 aaKnown RBP eCLIP27.35■■□□□ 1.97
TM9SF1-202ENST00000396854 CECR2Q9BXF3 1484 aa26.94■■□□□ 1.9
TM9SF1-202ENST00000396854 BAZ1AQ9NRL2 1556 aaPredicted RBP26.87■■□□□ 1.89
TM9SF1-202ENST00000396854 SMARCA4P51532 1647 aa26.82■■□□□ 1.88
TM9SF1-202ENST00000396854 EIF4G1Q04637 1599 aaKnown RBP26.79■■□□□ 1.88
TM9SF1-202ENST00000396854 MROH2BQ7Z745 1585 aa26.76■■□□□ 1.87
TM9SF1-202ENST00000396854 RSF1Q96T23 1441 aaPredicted RBP26.68■■□□□ 1.86
TM9SF1-202ENST00000396854 PEG3Q9GZU2 1588 aa26.57■■□□□ 1.84
TM9SF1-202ENST00000396854 WIZO95785 1651 aa26.53■■□□□ 1.84
TM9SF1-202ENST00000396854 CC2D2AQ9P2K1 1620 aa26.51■■□□□ 1.83
TM9SF1-202ENST00000396854 SMARCA2P51531 1590 aa26.48■■□□□ 1.83
TM9SF1-202ENST00000396854 ATAD2BQ9ULI0 1458 aa26.46■■□□□ 1.83
TM9SF1-202ENST00000396854 SUPT5HO00267 1087 aaKnown RBP26.42■■□□□ 1.82
TM9SF1-202ENST00000396854 NCAPD3P42695 1498 aa26.34■■□□□ 1.81
TM9SF1-202ENST00000396854 HMGXB3Q12766 1538 aa26.32■■□□□ 1.8
TM9SF1-202ENST00000396854 TOP2AP11388 1531 aaKnown RBP26.28■■□□□ 1.8
TM9SF1-202ENST00000396854 BAZ1BQ9UIG0 1483 aaKnown RBP26.28■■□□□ 1.8
TM9SF1-202ENST00000396854 DNAJC5BQ9UF47 199 aa26.16■■□□□ 1.78
TM9SF1-202ENST00000396854 CCDC88BA6NC98 1476 aa25.94■■□□□ 1.74
TM9SF1-202ENST00000396854 CFTRP13569 1480 aa25.61■■□□□ 1.69
TM9SF1-202ENST00000396854 PRDM2Q13029 1718 aa25.6■■□□□ 1.69
TM9SF1-202ENST00000396854 CADPSQ9ULU8 1353 aa25.59■■□□□ 1.69
TM9SF1-202ENST00000396854 LAMC3Q9Y6N6 1575 aa25.58■■□□□ 1.69
TM9SF1-202ENST00000396854 NESP48681 1621 aa25.49■■□□□ 1.67
TM9SF1-202ENST00000396854 PDS5BQ9NTI5 1447 aa25.32■■□□□ 1.64
TM9SF1-202ENST00000396854 FANCD2Q9BXW9 1451 aa25.3■■□□□ 1.64
TM9SF1-202ENST00000396854 KIF21AQ7Z4S6 1674 aa25.29■■□□□ 1.64
TM9SF1-202ENST00000396854 CEP164Q9UPV0 1460 aa25.22■■□□□ 1.63
TM9SF1-202ENST00000396854 ABCC8Q09428 1581 aa25.21■■□□□ 1.63
TM9SF1-202ENST00000396854 WRNQ14191 1432 aaPredicted RBP eCLIP25.13■■□□□ 1.61
TM9SF1-202ENST00000396854 ERCC6Q03468 1493 aa25.11■■□□□ 1.61
TM9SF1-202ENST00000396854 CHIC1Q5VXU3 224 aa25.09■■□□□ 1.61
TM9SF1-202ENST00000396854 SYNJ1O43426 1573 aa25.08■■□□□ 1.61
TM9SF1-202ENST00000396854 BIVM-ERCC5R4GMW8 1640 aa25.08■■□□□ 1.61
TM9SF1-202ENST00000396854 CUX1P39880 1505 aa25.06■■□□□ 1.6
TM9SF1-202ENST00000396854 TOP2BQ02880 1626 aa25.06■■□□□ 1.6
TM9SF1-202ENST00000396854 DNMBPQ6XZF7 1577 aa25.05■■□□□ 1.6
TM9SF1-202ENST00000396854 MRC2Q9UBG0 1479 aa25.04■■□□□ 1.6
TM9SF1-202ENST00000396854 THOC2Q8NI27 1593 aaKnown RBP25.03■■□□□ 1.6
TM9SF1-202ENST00000396854 URB2Q14146 1524 aaKnown RBP25.03■■□□□ 1.6
TM9SF1-202ENST00000396854 TOPBP1Q92547 1522 aa25■■□□□ 1.59
TM9SF1-202ENST00000396854 WDR62O43379 1518 aa24.98■■□□□ 1.59
TM9SF1-202ENST00000396854 TRIM41Q8WV44 630 aa24.94■■□□□ 1.58
TM9SF1-202ENST00000396854 FGD5Q6ZNL6 1462 aa24.86■■□□□ 1.57
TM9SF1-202ENST00000396854 POLA1P09884 1462 aaPredicted RBP24.83■■□□□ 1.57
TM9SF1-202ENST00000396854 CUX2O14529 1486 aa24.72■■□□□ 1.55
TM9SF1-202ENST00000396854 WDR97A6NE52 1622 aa24.72■■□□□ 1.55
TM9SF1-202ENST00000396854 TARBP1Q13395 1621 aaKnown RBP24.71■■□□□ 1.55
TM9SF1-202ENST00000396854 SOGA1O94964 1423 aa24.7■■□□□ 1.54
TM9SF1-202ENST00000396854 RAD54L2Q9Y4B4 1467 aa24.69■■□□□ 1.54
TM9SF1-202ENST00000396854 ABCA10Q8WWZ4 1543 aa24.67■■□□□ 1.54
TM9SF1-202ENST00000396854 IFT140Q96RY7 1462 aa24.66■■□□□ 1.54
TM9SF1-202ENST00000396854 ABCA5Q8WWZ7 1642 aa24.55■■□□□ 1.52
TM9SF1-202ENST00000396854 EEA1Q15075 1411 aa24.55■■□□□ 1.52
TM9SF1-202ENST00000396854 KIF27Q86VH2 1401 aa24.54■■□□□ 1.52
TM9SF1-202ENST00000396854 RUSC2Q8N2Y8 1516 aa24.54■■□□□ 1.52
TM9SF1-202ENST00000396854 ZNF608Q9ULD9 1512 aaPredicted RBP24.48■■□□□ 1.51
TM9SF1-202ENST00000396854 EIF4G3O43432 1585 aaKnown RBP24.48■■□□□ 1.51
TM9SF1-202ENST00000396854 TDRD9Q8NDG6 1382 aaKnown RBP24.45■■□□□ 1.51
TM9SF1-202ENST00000396854 GAPVD1Q14C86 1478 aa24.45■■□□□ 1.5
TM9SF1-202ENST00000396854 PBRM1Q86U86 1689 aa24.44■■□□□ 1.5
TM9SF1-202ENST00000396854 AQRO60306 1485 aaKnown RBP eCLIP24.41■■□□□ 1.5
TM9SF1-202ENST00000396854 ERICH3Q5RHP9 1530 aa24.4■■□□□ 1.5
TM9SF1-202ENST00000396854 FAM9AQ8IZU1 332 aaPredicted RBP24.38■■□□□ 1.49
TM9SF1-202ENST00000396854 GRIN2BQ13224 1484 aa24.35■■□□□ 1.49
TM9SF1-202ENST00000396854 CSRNP3Q8WYN3 585 aa24.35■■□□□ 1.49
TM9SF1-202ENST00000396854 IGF1RP08069 1367 aa24.35■■□□□ 1.49
TM9SF1-202ENST00000396854 CUL7Q14999 1698 aa24.34■■□□□ 1.49
TM9SF1-202ENST00000396854 KIF21BO75037 1637 aa24.29■■□□□ 1.48
TM9SF1-202ENST00000396854 PRXQ9BXM0 1461 aa24.27■■□□□ 1.48
TM9SF1-202ENST00000396854 ADAMTS12P58397 1594 aa24.25■■□□□ 1.47
TM9SF1-202ENST00000396854 MAGI1Q96QZ7 1491 aaPredicted RBP24.24■■□□□ 1.47
TM9SF1-202ENST00000396854 SNAPC4Q5SXM2 1469 aa24.23■■□□□ 1.47
TM9SF1-202ENST00000396854 CARMIL1Q5VZK9 1371 aa24.22■■□□□ 1.47
TM9SF1-202ENST00000396854 FHAD1B1AJZ9 1412 aa24.18■■□□□ 1.46
TM9SF1-202ENST00000396854 RAPGEF2Q9Y4G8 1499 aa24.17■■□□□ 1.46
TM9SF1-202ENST00000396854 GOLGA3Q08378 1498 aa24.15■■□□□ 1.46
TM9SF1-202ENST00000396854 SYNJ2O15056 1496 aa24.12■■□□□ 1.45
TM9SF1-202ENST00000396854 CHD1O14646 1710 aa24.06■■□□□ 1.44
TM9SF1-202ENST00000396854 GRIN2AQ12879 1464 aa24.06■■□□□ 1.44
TM9SF1-202ENST00000396854 LOC105371045A0A1W2PR82 267 aa24.04■■□□□ 1.44
TM9SF1-202ENST00000396854 CTTNBP2Q8WZ74 1663 aa24.01■■□□□ 1.43
TM9SF1-202ENST00000396854 CHMP7Q8WUX9 453 aaPredicted RBP23.99■■□□□ 1.43
TM9SF1-202ENST00000396854 EHMT2Q96KQ7 1210 aa23.98■■□□□ 1.43
TM9SF1-202ENST00000396854 TNIKQ9UKE5 1360 aa23.95■■□□□ 1.43
TM9SF1-202ENST00000396854 UBTFP17480 764 aaKnown RBP23.94■■□□□ 1.42
TM9SF1-202ENST00000396854 CEP170Q5SW79 1584 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms