RNA–Protein interactions for RNA: ENST00000613122.4

CTDP1-208, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CTDP1, Length 5,866 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-208ENST00000613122 DCAF8L2P0C7V8 631 aa35.65■■■■□ 3.3
CTDP1-208ENST00000613122 NISCHQ9Y2I1 1504 aa33.47■■■□□ 2.95
CTDP1-208ENST00000613122 SUPT5HO00267 1087 aaKnown RBP33.34■■■□□ 2.93
CTDP1-208ENST00000613122 SHROOM4Q9ULL8 1493 aa32.81■■■□□ 2.84
CTDP1-208ENST00000613122 EHMT2Q96KQ7 1210 aa32.39■■■□□ 2.78
CTDP1-208ENST00000613122 APLP2Q06481 763 aa32.01■■■□□ 2.71
CTDP1-208ENST00000613122 FAM9AQ8IZU1 332 aaPredicted RBP31.9■■■□□ 2.7
CTDP1-208ENST00000613122 PELP1Q8IZL8 1130 aaKnown RBP31.38■■■□□ 2.61
CTDP1-208ENST00000613122 TTBK1Q5TCY1 1321 aaPredicted RBP31.24■■■□□ 2.59
CTDP1-208ENST00000613122 RANGAP1P46060 587 aaPredicted RBP31.17■■■□□ 2.58
CTDP1-208ENST00000613122 ATP1B4Q9UN42 357 aaPredicted RBP31.03■■■□□ 2.56
CTDP1-208ENST00000613122 TRIM41Q8WV44 630 aa30.95■■■□□ 2.54
CTDP1-208ENST00000613122 PCGF6Q9BYE7 350 aa30.75■■■□□ 2.51
CTDP1-208ENST00000613122 UBTFP17480 764 aaKnown RBP30.72■■■□□ 2.51
CTDP1-208ENST00000613122 CCER1Q8TC90 406 aaPredicted RBP30.45■■■□□ 2.47
CTDP1-208ENST00000613122 ZEB1P37275 1124 aaPredicted RBP30.31■■■□□ 2.44
CTDP1-208ENST00000613122 CENPBP07199 599 aaPredicted RBP30.16■■■□□ 2.42
CTDP1-208ENST00000613122 MYT1LQ9UL68 1186 aa30.11■■■□□ 2.41
CTDP1-208ENST00000613122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.05■■■□□ 2.4
CTDP1-208ENST00000613122 HNRNPUL2Q1KMD3 747 aaKnown RBP30.05■■■□□ 2.4
CTDP1-208ENST00000613122 ERICH6Q7L0X2 663 aa30.04■■■□□ 2.4
CTDP1-208ENST00000613122 PPARGC1BQ86YN6 1023 aaKnown RBP29.86■■■□□ 2.37
CTDP1-208ENST00000613122 NEFLP07196 543 aa29.8■■■□□ 2.36
CTDP1-208ENST00000613122 ITGAEP38570 1179 aa29.71■■■□□ 2.35
CTDP1-208ENST00000613122 YTHDC1Q96MU7 727 aaKnown RBP29.61■■■□□ 2.33
CTDP1-208ENST00000613122 POLR3GLQ9BT43 218 aa29.55■■■□□ 2.32
CTDP1-208ENST00000613122 TRIM26Q12899 539 aaPredicted RBP29.45■■■□□ 2.3
CTDP1-208ENST00000613122 CHIC1Q5VXU3 224 aa29.45■■■□□ 2.3
CTDP1-208ENST00000613122 ABCC9O60706 1549 aa29.42■■■□□ 2.3
CTDP1-208ENST00000613122 PABPN1Q86U42 306 aaKnown RBP eCLIP29.39■■■□□ 2.3
CTDP1-208ENST00000613122 LOC105371045A0A1W2PR82 267 aa29.21■■■□□ 2.27
CTDP1-208ENST00000613122 SLC4A1APQ9BWU0 796 aaKnown RBP29.21■■■□□ 2.27
CTDP1-208ENST00000613122 CNGB1Q14028 1251 aaPredicted RBP29.15■■■□□ 2.26
CTDP1-208ENST00000613122 DAXXQ9UER7 740 aaPredicted RBP29.02■■■□□ 2.24
CTDP1-208ENST00000613122 FAM50AQ14320 339 aaKnown RBP29.01■■■□□ 2.24
CTDP1-208ENST00000613122 FBLN2P98095 1184 aa28.96■■■□□ 2.23
CTDP1-208ENST00000613122 TRIM52Q96A61 297 aa28.92■■■□□ 2.22
CTDP1-208ENST00000613122 HRCP23327 699 aa28.86■■■□□ 2.21
CTDP1-208ENST00000613122 NEUROD1Q13562 356 aa28.59■■■□□ 2.17
CTDP1-208ENST00000613122 ZNF326Q5BKZ1 582 aaKnown RBP28.54■■■□□ 2.16
CTDP1-208ENST00000613122 CLSPNQ9HAW4 1339 aa28.53■■■□□ 2.16
CTDP1-208ENST00000613122 BCANQ96GW7 911 aa28.45■■■□□ 2.15
CTDP1-208ENST00000613122 ARID3CA6NKF2 412 aa28.41■■■□□ 2.14
CTDP1-208ENST00000613122 P3H3Q8IVL6 736 aa28.39■■■□□ 2.13
CTDP1-208ENST00000613122 DIEXFQ68CQ4 756 aaKnown RBP28.34■■■□□ 2.13
CTDP1-208ENST00000613122 ZNF316A6NFI3 1004 aaPredicted RBP28.32■■■□□ 2.12
CTDP1-208ENST00000613122 ZNF777Q9ULD5 760 aaPredicted RBP28.27■■■□□ 2.12
CTDP1-208ENST00000613122 CDK11AQ9UQ88 783 aaPredicted RBP28.24■■■□□ 2.11
CTDP1-208ENST00000613122 SLC24A1O60721 1099 aa28.23■■■□□ 2.11
CTDP1-208ENST00000613122 ESF1Q9H501 851 aaKnown RBP28.23■■■□□ 2.11
CTDP1-208ENST00000613122 MYT1Q01538 1121 aa28.22■■■□□ 2.11
CTDP1-208ENST00000613122 ZBTB47Q9UFB7 747 aaPredicted RBP28.21■■■□□ 2.11
CTDP1-208ENST00000613122 ANP32CO43423 234 aa28.19■■■□□ 2.1
CTDP1-208ENST00000613122 CSRNP3Q8WYN3 585 aa28.17■■■□□ 2.1
CTDP1-208ENST00000613122 NEFMP07197 916 aa28.16■■■□□ 2.1
CTDP1-208ENST00000613122 NPM1P06748 294 aaKnown RBP eCLIP28.11■■■□□ 2.09
CTDP1-208ENST00000613122 SCRIBQ14160 1630 aa28.1■■■□□ 2.09
CTDP1-208ENST00000613122 RTL5Q5HYW3 569 aaPredicted RBP28.04■■■□□ 2.08
CTDP1-208ENST00000613122 CANXP27824 592 aaKnown RBP28.01■■■□□ 2.07
CTDP1-208ENST00000613122 STAG3Q9UJ98 1225 aa27.99■■■□□ 2.07
CTDP1-208ENST00000613122 PLPPR3Q6T4P5 718 aa27.94■■■□□ 2.06
CTDP1-208ENST00000613122 CHGAP10645 457 aaKnown RBP27.92■■■□□ 2.06
CTDP1-208ENST00000613122 BCL11AQ9H165 835 aa27.89■■■□□ 2.05
CTDP1-208ENST00000613122 CHMP7Q8WUX9 453 aaPredicted RBP27.66■■■□□ 2.02
CTDP1-208ENST00000613122 TONSLQ96HA7 1378 aa27.63■■■□□ 2.01
CTDP1-208ENST00000613122 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.62■■■□□ 2.01
CTDP1-208ENST00000613122 ZCCHC6Q5VYS8 1495 aaKnown RBP27.58■■■□□ 2.01
CTDP1-208ENST00000613122 CHIC2Q9UKJ5 165 aa27.54■■■□□ 2
CTDP1-208ENST00000613122 TSPY4P0CV99 314 aa27.54■■■□□ 2
CTDP1-208ENST00000613122 TSPY10P0CW01 314 aa27.54■■■□□ 2
CTDP1-208ENST00000613122 GTF3C3Q9Y5Q9 886 aa27.45■■□□□ 1.98
CTDP1-208ENST00000613122 MTUS2Q5JR59 1369 aa27.41■■□□□ 1.98
CTDP1-208ENST00000613122 RB1CC1Q8TDY2 1594 aa27.4■■□□□ 1.98
CTDP1-208ENST00000613122 CCDC180Q9P1Z9 1646 aa27.37■■□□□ 1.97
CTDP1-208ENST00000613122 SCAF1Q9H7N4 1312 aaKnown RBP27.36■■□□□ 1.97
CTDP1-208ENST00000613122 KDM2AQ9Y2K7 1162 aa27.3■■□□□ 1.96
CTDP1-208ENST00000613122 KCNH8Q96L42 1107 aa27.3■■□□□ 1.96
CTDP1-208ENST00000613122 ANP32AP39687 249 aaKnown RBP27.25■■□□□ 1.95
CTDP1-208ENST00000613122 FAM9BQ8IZU0 186 aa27.24■■□□□ 1.95
CTDP1-208ENST00000613122 PPP1R15AO75807 674 aaPredicted RBP27.23■■□□□ 1.95
CTDP1-208ENST00000613122 PLEKHD1A6NEE1 506 aa27.21■■□□□ 1.95
CTDP1-208ENST00000613122 DDX10Q13206 875 aaKnown RBP27.2■■□□□ 1.94
CTDP1-208ENST00000613122 WDR43Q15061 677 aaKnown RBP eCLIP27.19■■□□□ 1.94
CTDP1-208ENST00000613122 SALL2Q9Y467 1007 aaPredicted RBP27.19■■□□□ 1.94
CTDP1-208ENST00000613122 HNRNPUQ00839 825 aaKnown RBP eCLIP27.19■■□□□ 1.94
CTDP1-208ENST00000613122 TMC1Q8TDI8 760 aa27.19■■□□□ 1.94
CTDP1-208ENST00000613122 NPM2Q86SE8 214 aaKnown RBP27.18■■□□□ 1.94
CTDP1-208ENST00000613122 A0A0G2JS52 829 aa27.17■■□□□ 1.94
CTDP1-208ENST00000613122 HSP90AA1P07900 732 aaKnown RBP27.14■■□□□ 1.93
CTDP1-208ENST00000613122 C14orf37Q86TY3 774 aa27.13■■□□□ 1.93
CTDP1-208ENST00000613122 ARID4BQ4LE39 1312 aaPredicted RBP27.12■■□□□ 1.93
CTDP1-208ENST00000613122 CLIP1P30622 1438 aa27.12■■□□□ 1.93
CTDP1-208ENST00000613122 ZBTB7CA1YPR0 619 aa27.11■■□□□ 1.93
CTDP1-208ENST00000613122 UPF2Q9HAU5 1272 aaKnown RBP27.11■■□□□ 1.93
CTDP1-208ENST00000613122 SENP3Q9H4L4 574 aaPredicted RBP27.1■■□□□ 1.93
CTDP1-208ENST00000613122 RSF1Q96T23 1441 aaPredicted RBP27.09■■□□□ 1.93
CTDP1-208ENST00000613122 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.08■■□□□ 1.93
CTDP1-208ENST00000613122 RRP7BPQ9NSQ0 103 aa27.08■■□□□ 1.92
CTDP1-208ENST00000613122 PLEKHG5O94827 1062 aa27.06■■□□□ 1.92
CTDP1-208ENST00000613122 BAZ1BQ9UIG0 1483 aaKnown RBP27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms