RNA–Protein interactions for RNA: ENST00000602905.1

PPFIA3-213, Transcript of PTPRF interacting protein alpha 3, humanhuman

TSL 2

Gene PPFIA3, Length 799 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA3-213ENST00000602905 NISCHQ9Y2I1 1504 aa38.43■■■■□ 3.74
PPFIA3-213ENST00000602905 CCDC180Q9P1Z9 1646 aa34.16■■■■□ 3.06
PPFIA3-213ENST00000602905 ABCC9O60706 1549 aa33.24■■■□□ 2.91
PPFIA3-213ENST00000602905 DCAF8L2P0C7V8 631 aa32.16■■■□□ 2.74
PPFIA3-213ENST00000602905 RB1CC1Q8TDY2 1594 aa32.1■■■□□ 2.73
PPFIA3-213ENST00000602905 NACADO15069 1562 aa32.08■■■□□ 2.73
PPFIA3-213ENST00000602905 ZCCHC6Q5VYS8 1495 aaKnown RBP32.03■■■□□ 2.72
PPFIA3-213ENST00000602905 MYO15BQ96JP2 1530 aa31.9■■■□□ 2.7
PPFIA3-213ENST00000602905 DCAF1Q9Y4B6 1507 aa31.81■■■□□ 2.68
PPFIA3-213ENST00000602905 UNC13AQ9UPW8 1703 aa31.35■■■□□ 2.61
PPFIA3-213ENST00000602905 SCRIBQ14160 1630 aa31.16■■■□□ 2.58
PPFIA3-213ENST00000602905 PABPN1Q86U42 306 aaKnown RBP eCLIP31.08■■■□□ 2.575e-6■■■■□ 22.2
PPFIA3-213ENST00000602905 BICRAQ9NZM4 1560 aa31.02■■■□□ 2.56
PPFIA3-213ENST00000602905 SHROOM4Q9ULL8 1493 aa30.78■■■□□ 2.52
PPFIA3-213ENST00000602905 DNAJC5BQ9UF47 199 aa30.29■■■□□ 2.44
PPFIA3-213ENST00000602905 EIF4G1Q04637 1599 aaKnown RBP30.24■■■□□ 2.43
PPFIA3-213ENST00000602905 CC2D2AQ9P2K1 1620 aa30.09■■■□□ 2.41
PPFIA3-213ENST00000602905 CECR2Q9BXF3 1484 aa29.88■■■□□ 2.37
PPFIA3-213ENST00000602905 BAZ1AQ9NRL2 1556 aaPredicted RBP29.82■■■□□ 2.36
PPFIA3-213ENST00000602905 SMARCA4P51532 1647 aa29.82■■■□□ 2.36
PPFIA3-213ENST00000602905 SMARCA2P51531 1590 aa29.62■■■□□ 2.33
PPFIA3-213ENST00000602905 MROH2BQ7Z745 1585 aa29.6■■■□□ 2.33
PPFIA3-213ENST00000602905 ATAD2BQ9ULI0 1458 aa29.59■■■□□ 2.33
PPFIA3-213ENST00000602905 NCAPD3P42695 1498 aa29.55■■■□□ 2.32
PPFIA3-213ENST00000602905 PEG3Q9GZU2 1588 aa29.49■■■□□ 2.31
PPFIA3-213ENST00000602905 HMGXB3Q12766 1538 aa29.45■■■□□ 2.3
PPFIA3-213ENST00000602905 BAZ1BQ9UIG0 1483 aaKnown RBP29.41■■■□□ 2.3
PPFIA3-213ENST00000602905 WIZO95785 1651 aa29.33■■■□□ 2.29
PPFIA3-213ENST00000602905 RSF1Q96T23 1441 aaPredicted RBP29.32■■■□□ 2.28
PPFIA3-213ENST00000602905 TOP2AP11388 1531 aaKnown RBP29.03■■■□□ 2.24
PPFIA3-213ENST00000602905 LAMC3Q9Y6N6 1575 aa28.8■■■□□ 2.2
PPFIA3-213ENST00000602905 NESP48681 1621 aa28.78■■■□□ 2.2
PPFIA3-213ENST00000602905 SUPT5HO00267 1087 aaKnown RBP28.77■■■□□ 2.2
PPFIA3-213ENST00000602905 CADPSQ9ULU8 1353 aa28.72■■■□□ 2.19
PPFIA3-213ENST00000602905 ERCC6Q03468 1493 aa28.71■■■□□ 2.19
PPFIA3-213ENST00000602905 CCDC88BA6NC98 1476 aa28.67■■■□□ 2.18
PPFIA3-213ENST00000602905 PDS5BQ9NTI5 1447 aa28.62■■■□□ 2.17
PPFIA3-213ENST00000602905 CFTRP13569 1480 aa28.56■■■□□ 2.16
PPFIA3-213ENST00000602905 KIF21AQ7Z4S6 1674 aa28.51■■■□□ 2.15
PPFIA3-213ENST00000602905 PRDM2Q13029 1718 aa28.46■■■□□ 2.15
PPFIA3-213ENST00000602905 FANCD2Q9BXW9 1451 aa28.4■■■□□ 2.14
PPFIA3-213ENST00000602905 CEP164Q9UPV0 1460 aa28.37■■■□□ 2.13
PPFIA3-213ENST00000602905 THOC2Q8NI27 1593 aaKnown RBP28.33■■■□□ 2.13
PPFIA3-213ENST00000602905 CUX2O14529 1486 aa28.32■■■□□ 2.12
PPFIA3-213ENST00000602905 MRC2Q9UBG0 1479 aa28.28■■■□□ 2.12
PPFIA3-213ENST00000602905 WDR62O43379 1518 aa28.16■■■□□ 2.1
PPFIA3-213ENST00000602905 URB2Q14146 1524 aaKnown RBP28.07■■■□□ 2.08
PPFIA3-213ENST00000602905 ABCC8Q09428 1581 aa28.03■■■□□ 2.08
PPFIA3-213ENST00000602905 DNMBPQ6XZF7 1577 aa27.95■■■□□ 2.07
PPFIA3-213ENST00000602905 TOPBP1Q92547 1522 aa27.95■■■□□ 2.06
PPFIA3-213ENST00000602905 CUX1P39880 1505 aa27.77■■■□□ 2.04
PPFIA3-213ENST00000602905 IFT140Q96RY7 1462 aa27.76■■■□□ 2.04
PPFIA3-213ENST00000602905 POLA1P09884 1462 aaPredicted RBP27.7■■■□□ 2.03
PPFIA3-213ENST00000602905 WRNQ14191 1432 aaPredicted RBP eCLIP27.69■■■□□ 2.02
PPFIA3-213ENST00000602905 FGD5Q6ZNL6 1462 aa27.68■■■□□ 2.02
PPFIA3-213ENST00000602905 SOGA1O94964 1423 aa27.64■■■□□ 2.02
PPFIA3-213ENST00000602905 TARBP1Q13395 1621 aaKnown RBP27.62■■■□□ 2.01
PPFIA3-213ENST00000602905 TOP2BQ02880 1626 aa27.61■■■□□ 2.01
PPFIA3-213ENST00000602905 BIVM-ERCC5R4GMW8 1640 aa27.61■■■□□ 2.01
PPFIA3-213ENST00000602905 RAD54L2Q9Y4B4 1467 aa27.58■■■□□ 2.01
PPFIA3-213ENST00000602905 SYNJ1O43426 1573 aa27.57■■■□□ 2
PPFIA3-213ENST00000602905 ZNF608Q9ULD9 1512 aaPredicted RBP27.57■■■□□ 2
PPFIA3-213ENST00000602905 EIF4G3O43432 1585 aaKnown RBP27.51■■□□□ 1.99
PPFIA3-213ENST00000602905 WDR97A6NE52 1622 aa27.48■■□□□ 1.99
PPFIA3-213ENST00000602905 AQRO60306 1485 aaKnown RBP eCLIP27.45■■□□□ 1.99
PPFIA3-213ENST00000602905 TDRD9Q8NDG6 1382 aaKnown RBP27.44■■□□□ 1.98
PPFIA3-213ENST00000602905 ABCA10Q8WWZ4 1543 aa27.42■■□□□ 1.98
PPFIA3-213ENST00000602905 GAPVD1Q14C86 1478 aa27.32■■□□□ 1.96
PPFIA3-213ENST00000602905 GRIN2BQ13224 1484 aa27.3■■□□□ 1.96
PPFIA3-213ENST00000602905 ABCA5Q8WWZ7 1642 aa27.29■■□□□ 1.96
PPFIA3-213ENST00000602905 PBRM1Q86U86 1689 aa27.29■■□□□ 1.96
PPFIA3-213ENST00000602905 DNAJC5Q9H3Z4 198 aa27.24■■□□□ 1.95
PPFIA3-213ENST00000602905 SNAPC4Q5SXM2 1469 aa27.22■■□□□ 1.95
PPFIA3-213ENST00000602905 MAGI1Q96QZ7 1491 aaPredicted RBP27.21■■□□□ 1.95
PPFIA3-213ENST00000602905 OSCARQ8IYS5 282 aa27.2■■□□□ 1.94
PPFIA3-213ENST00000602905 TRIM41Q8WV44 630 aa27.2■■□□□ 1.94
PPFIA3-213ENST00000602905 FBLN2P98095 1184 aa27.18■■□□□ 1.94
PPFIA3-213ENST00000602905 CHD1O14646 1710 aa27.17■■□□□ 1.94
PPFIA3-213ENST00000602905 CHMP7Q8WUX9 453 aaPredicted RBP27.13■■□□□ 1.93
PPFIA3-213ENST00000602905 KIF27Q86VH2 1401 aa27.13■■□□□ 1.93
PPFIA3-213ENST00000602905 ERICH3Q5RHP9 1530 aa27.11■■□□□ 1.93
PPFIA3-213ENST00000602905 SYNJ2O15056 1496 aa27.09■■□□□ 1.93
PPFIA3-213ENST00000602905 ADAMTS12P58397 1594 aa27.03■■□□□ 1.92
PPFIA3-213ENST00000602905 FHAD1B1AJZ9 1412 aa27.01■■□□□ 1.91
PPFIA3-213ENST00000602905 CUL7Q14999 1698 aa26.94■■□□□ 1.9
PPFIA3-213ENST00000602905 IGF1RP08069 1367 aa26.94■■□□□ 1.9
PPFIA3-213ENST00000602905 GRIN2AQ12879 1464 aa26.93■■□□□ 1.9
PPFIA3-213ENST00000602905 CHIC1Q5VXU3 224 aa26.89■■□□□ 1.9
PPFIA3-213ENST00000602905 RUSC2Q8N2Y8 1516 aa26.84■■□□□ 1.89
PPFIA3-213ENST00000602905 CARMIL1Q5VZK9 1371 aa26.84■■□□□ 1.89
PPFIA3-213ENST00000602905 CLASP1Q7Z460 1538 aa26.81■■□□□ 1.88
PPFIA3-213ENST00000602905 NUP160Q12769 1436 aa26.78■■□□□ 1.88
PPFIA3-213ENST00000602905 CEP170Q5SW79 1584 aa26.76■■□□□ 1.87
PPFIA3-213ENST00000602905 EEA1Q15075 1411 aa26.73■■□□□ 1.87
PPFIA3-213ENST00000602905 RIMBP3CA6NJZ7 1639 aa26.71■■□□□ 1.87
PPFIA3-213ENST00000602905 RIMBP3BA6NNM3 1639 aa26.71■■□□□ 1.87
PPFIA3-213ENST00000602905 RIMBP3Q9UFD9 1639 aa26.71■■□□□ 1.87
PPFIA3-213ENST00000602905 ARHGEF11O15085 1522 aa26.7■■□□□ 1.87
PPFIA3-213ENST00000602905 RAPGEF2Q9Y4G8 1499 aa26.69■■□□□ 1.86
PPFIA3-213ENST00000602905 CSRNP3Q8WYN3 585 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms