RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 NISCHQ9Y2I1 1504 aa26.98■■□□□ 1.91
CTDP1-202ENST00000299543 SHROOM4Q9ULL8 1493 aa23.74■■□□□ 1.39
CTDP1-202ENST00000299543 SUPT5HO00267 1087 aaKnown RBP23.38■■□□□ 1.33
CTDP1-202ENST00000299543 DCAF8L2P0C7V8 631 aa23.27■■□□□ 1.32
CTDP1-202ENST00000299543 ZCCHC6Q5VYS8 1495 aaKnown RBP22.75■■□□□ 1.23
CTDP1-202ENST00000299543 CCDC180Q9P1Z9 1646 aa22.58■■□□□ 1.2
CTDP1-202ENST00000299543 CHIC1Q5VXU3 224 aa22.45■■□□□ 1.18
CTDP1-202ENST00000299543 MYO15BQ96JP2 1530 aa22.24■■□□□ 1.15
CTDP1-202ENST00000299543 PPARGC1BQ86YN6 1023 aaKnown RBP22.17■■□□□ 1.14
CTDP1-202ENST00000299543 HRCP23327 699 aa22.14■■□□□ 1.13
CTDP1-202ENST00000299543 PCGF6Q9BYE7 350 aa22.1■■□□□ 1.13
CTDP1-202ENST00000299543 LOC105371045A0A1W2PR82 267 aa22.03■■□□□ 1.12
CTDP1-202ENST00000299543 DCAF1Q9Y4B6 1507 aa21.84■■□□□ 1.09
CTDP1-202ENST00000299543 EHMT2Q96KQ7 1210 aa21.75■■□□□ 1.07
CTDP1-202ENST00000299543 FAM9AQ8IZU1 332 aaPredicted RBP21.71■■□□□ 1.07
CTDP1-202ENST00000299543 SCRIBQ14160 1630 aa21.66■■□□□ 1.06
CTDP1-202ENST00000299543 TRIM41Q8WV44 630 aa21.61■■□□□ 1.05
CTDP1-202ENST00000299543 PELP1Q8IZL8 1130 aaKnown RBP21.6■■□□□ 1.05
CTDP1-202ENST00000299543 ABCC9O60706 1549 aa21.53■■□□□ 1.04
CTDP1-202ENST00000299543 RSF1Q96T23 1441 aaPredicted RBP21.51■■□□□ 1.03
CTDP1-202ENST00000299543 TRIM26Q12899 539 aaPredicted RBP21.42■■□□□ 1.02
CTDP1-202ENST00000299543 SCAF1Q9H7N4 1312 aaKnown RBP21.41■■□□□ 1.02
CTDP1-202ENST00000299543 RB1CC1Q8TDY2 1594 aa21.26■□□□□ 0.99
CTDP1-202ENST00000299543 CECR2Q9BXF3 1484 aa21.25■□□□□ 0.99
CTDP1-202ENST00000299543 MROH2BQ7Z745 1585 aa21.09■□□□□ 0.97
CTDP1-202ENST00000299543 NACADO15069 1562 aa21.05■□□□□ 0.96
CTDP1-202ENST00000299543 TTBK1Q5TCY1 1321 aaPredicted RBP21.01■□□□□ 0.95
CTDP1-202ENST00000299543 WIZO95785 1651 aa20.95■□□□□ 0.95
CTDP1-202ENST00000299543 ZEB1P37275 1124 aaPredicted RBP20.9■□□□□ 0.94
CTDP1-202ENST00000299543 PABPN1Q86U42 306 aaKnown RBP eCLIP20.85■□□□□ 0.93
CTDP1-202ENST00000299543 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.79■□□□□ 0.92
CTDP1-202ENST00000299543 CCER1Q8TC90 406 aaPredicted RBP20.72■□□□□ 0.91
CTDP1-202ENST00000299543 MYT1Q01538 1121 aa20.7■□□□□ 0.9
CTDP1-202ENST00000299543 BAZ1AQ9NRL2 1556 aaPredicted RBP20.69■□□□□ 0.9
CTDP1-202ENST00000299543 UBTFP17480 764 aaKnown RBP20.69■□□□□ 0.9
CTDP1-202ENST00000299543 NEUROD1Q13562 356 aa20.68■□□□□ 0.9
CTDP1-202ENST00000299543 ABCC8Q09428 1581 aa20.65■□□□□ 0.9
CTDP1-202ENST00000299543 CCDC88BA6NC98 1476 aa20.6■□□□□ 0.89
CTDP1-202ENST00000299543 GTF3C3Q9Y5Q9 886 aa20.59■□□□□ 0.89
CTDP1-202ENST00000299543 ACIN1Q9UKV3 1341 aaKnown RBP20.55■□□□□ 0.88
CTDP1-202ENST00000299543 RANGAP1P46060 587 aaPredicted RBP20.55■□□□□ 0.88
CTDP1-202ENST00000299543 SOGA1O94964 1423 aa20.54■□□□□ 0.88
CTDP1-202ENST00000299543 CSRNP3Q8WYN3 585 aa20.51■□□□□ 0.87
CTDP1-202ENST00000299543 TOP2AP11388 1531 aaKnown RBP20.49■□□□□ 0.87
CTDP1-202ENST00000299543 SMARCA4P51532 1647 aa20.48■□□□□ 0.87
CTDP1-202ENST00000299543 CEP162Q5TB80 1403 aa20.43■□□□□ 0.86
CTDP1-202ENST00000299543 RUSC2Q8N2Y8 1516 aa20.43■□□□□ 0.86
CTDP1-202ENST00000299543 SMARCA2P51531 1590 aa20.42■□□□□ 0.86
CTDP1-202ENST00000299543 EIF4G1Q04637 1599 aaKnown RBP20.37■□□□□ 0.85
CTDP1-202ENST00000299543 HNRNPUL2Q1KMD3 747 aaKnown RBP20.33■□□□□ 0.84
CTDP1-202ENST00000299543 TNIKQ9UKE5 1360 aa20.31■□□□□ 0.84
CTDP1-202ENST00000299543 UNC13AQ9UPW8 1703 aa20.3■□□□□ 0.84
CTDP1-202ENST00000299543 WRNQ14191 1432 aaPredicted RBP eCLIP20.27■□□□□ 0.842e-8■■■■■ 75.2
CTDP1-202ENST00000299543 DIEXFQ68CQ4 756 aaKnown RBP20.26■□□□□ 0.83
CTDP1-202ENST00000299543 APLP2Q06481 763 aa20.24■□□□□ 0.83
CTDP1-202ENST00000299543 EEA1Q15075 1411 aa20.18■□□□□ 0.82
CTDP1-202ENST00000299543 GOLGA3Q08378 1498 aa20.17■□□□□ 0.82
CTDP1-202ENST00000299543 BICRAQ9NZM4 1560 aa20.15■□□□□ 0.82
CTDP1-202ENST00000299543 CENPBP07199 599 aaPredicted RBP20.13■□□□□ 0.81
CTDP1-202ENST00000299543 YTHDC1Q96MU7 727 aaKnown RBP20.13■□□□□ 0.81
CTDP1-202ENST00000299543 BAZ1BQ9UIG0 1483 aaKnown RBP20.09■□□□□ 0.81
CTDP1-202ENST00000299543 CLIP1P30622 1438 aa20.07■□□□□ 0.8
CTDP1-202ENST00000299543 ATAD2BQ9ULI0 1458 aa20.06■□□□□ 0.8
CTDP1-202ENST00000299543 SYNJ1O43426 1573 aa20.03■□□□□ 0.8
CTDP1-202ENST00000299543 CEP164Q9UPV0 1460 aa20.03■□□□□ 0.8
CTDP1-202ENST00000299543 ZNF316A6NFI3 1004 aaPredicted RBP20.01■□□□□ 0.79
CTDP1-202ENST00000299543 BCL11AQ9H165 835 aa20.01■□□□□ 0.79
CTDP1-202ENST00000299543 RAPGEF2Q9Y4G8 1499 aa19.97■□□□□ 0.79
CTDP1-202ENST00000299543 ITGAEP38570 1179 aa19.88■□□□□ 0.77
CTDP1-202ENST00000299543 VPS8Q8N3P4 1428 aa19.88■□□□□ 0.77
CTDP1-202ENST00000299543 PEG3Q9GZU2 1588 aa19.88■□□□□ 0.77
CTDP1-202ENST00000299543 MIER1Q8N108 512 aa19.82■□□□□ 0.76
CTDP1-202ENST00000299543 KANK4Q5T7N3 995 aaPredicted RBP19.8■□□□□ 0.76
CTDP1-202ENST00000299543 KIF21BO75037 1637 aa19.79■□□□□ 0.76
CTDP1-202ENST00000299543 ATP1B4Q9UN42 357 aaPredicted RBP19.73■□□□□ 0.75
CTDP1-202ENST00000299543 TOP2BQ02880 1626 aa19.67■□□□□ 0.74
CTDP1-202ENST00000299543 P3H3Q8IVL6 736 aa19.64■□□□□ 0.74
CTDP1-202ENST00000299543 KIF27Q86VH2 1401 aa19.64■□□□□ 0.73
CTDP1-202ENST00000299543 PRXQ9BXM0 1461 aa19.59■□□□□ 0.73
CTDP1-202ENST00000299543 CUX1P39880 1505 aa19.59■□□□□ 0.73
CTDP1-202ENST00000299543 ARAP1Q96P48 1450 aa19.58■□□□□ 0.72
CTDP1-202ENST00000299543 NCAPD3P42695 1498 aa19.57■□□□□ 0.72
CTDP1-202ENST00000299543 ANP32EQ9BTT0 268 aa19.57■□□□□ 0.72
CTDP1-202ENST00000299543 PRKCSHP14314 528 aaPredicted RBP19.53■□□□□ 0.72
CTDP1-202ENST00000299543 DHX57Q6P158 1386 aaKnown RBP19.53■□□□□ 0.72
CTDP1-202ENST00000299543 FAM50AQ14320 339 aaKnown RBP19.52■□□□□ 0.72
CTDP1-202ENST00000299543 CUX2O14529 1486 aa19.51■□□□□ 0.71
CTDP1-202ENST00000299543 BIVM-ERCC5R4GMW8 1640 aa19.48■□□□□ 0.71
CTDP1-202ENST00000299543 ERICH3Q5RHP9 1530 aa19.47■□□□□ 0.71
CTDP1-202ENST00000299543 CFTRP13569 1480 aa19.47■□□□□ 0.71
CTDP1-202ENST00000299543 CCNB3Q8WWL7 1395 aa19.46■□□□□ 0.71
CTDP1-202ENST00000299543 TSHZ2Q9NRE2 1034 aa19.44■□□□□ 0.7
CTDP1-202ENST00000299543 IGF1RP08069 1367 aa19.44■□□□□ 0.7
CTDP1-202ENST00000299543 HMGXB3Q12766 1538 aa19.43■□□□□ 0.7
CTDP1-202ENST00000299543 ARHGAP35Q9NRY4 1499 aa19.43■□□□□ 0.7
CTDP1-202ENST00000299543 CARMIL1Q5VZK9 1371 aa19.42■□□□□ 0.7
CTDP1-202ENST00000299543 CLSPNQ9HAW4 1339 aa19.39■□□□□ 0.69
CTDP1-202ENST00000299543 SUPT16HQ9Y5B9 1047 aaKnown RBP19.38■□□□□ 0.69
CTDP1-202ENST00000299543 CADPSQ9ULU8 1353 aa19.38■□□□□ 0.69
CTDP1-202ENST00000299543 SIN3AQ96ST3 1273 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms