Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.33■■□□□ 1.641e-7■■■□□ 15.2
YBX3P16989 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.751e-7■■■□□ 15.2
YBX3P16989 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.721e-7■■■□□ 15.2
YBX3P16989 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.71e-7■■■□□ 15.2
YBX3P16989 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.681e-7■■■□□ 15.2
YBX3P16989 GPS1-224ENST00000584460 1855 ntTSL 218.8■□□□□ 0.61e-7■■■□□ 15.2
YBX3P16989 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.28■□□□□ 0.521e-7■■■□□ 15.2
YBX3P16989 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.19■□□□□ 0.51e-7■■■□□ 15.2
YBX3P16989 GPS1-203ENST00000392357 4076 ntTSL 1 (best)14.18□□□□□ -0.141e-7■■■□□ 15.2
YBX3P16989 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.83■□□□□ 0.441e-7■■■□□ 15.2
YBX3P16989 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 01e-7■■■□□ 15.2
YBX3P16989 BTBD2-206ENST00000589200 858 ntTSL 531.68■■■□□ 2.661e-6■■■□□ 15.2
YBX3P16989 SEC14L1-222ENST00000588880 553 ntTSL 222.42■■□□□ 1.181e-6■■■□□ 15.2
YBX3P16989 SEC14L1-216ENST00000587820 652 ntTSL 320.86■□□□□ 0.931e-6■■■□□ 15.2
YBX3P16989 PRPF19-203ENST00000539180 441 ntTSL 219.32■□□□□ 0.689e-9■■■□□ 15.2
YBX3P16989 SEC14L1-207ENST00000561721 637 ntTSL 217.68■□□□□ 0.421e-6■■■□□ 15.2
YBX3P16989 PRPF19-204ENST00000539960 796 ntTSL 217.21■□□□□ 0.359e-9■■■□□ 15.2
YBX3P16989 SDE2-201ENST00000272091 3975 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.29e-9■■■□□ 15.2
YBX3P16989 SEC14L1-214ENST00000586429 575 ntTSL 511.31□□□□□ -0.61e-6■■■□□ 15.2
YBX3P16989 SEC14L1-213ENST00000586390 566 ntTSL 49.33□□□□□ -0.921e-6■■■□□ 15.2
YBX3P16989 SEC14L1-220ENST00000588696 437 ntTSL 28.96□□□□□ -0.981e-6■■■□□ 15.2
YBX3P16989 GOLGA7-207ENST00000523420 582 ntTSL 331.35■■■□□ 2.613e-6■■■□□ 15.2
YBX3P16989 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.373e-6■■■□□ 15.2
YBX3P16989 PDLIM4-205ENST00000463615 582 ntTSL 227.65■■■□□ 2.022e-6■■■□□ 15.1
YBX3P16989 PDLIM4-206ENST00000474421 1084 ntTSL 327.41■■□□□ 1.982e-6■■■□□ 15.1
YBX3P16989 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC24.96■■□□□ 1.592e-6■■■□□ 15.1
YBX3P16989 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.942e-6■■■□□ 15.1
YBX3P16989 MKI67-205ENST00000484853 733 ntTSL 28.21□□□□□ -1.11e-8■■■□□ 15.1
YBX3P16989 GAMT-205ENST00000640762 751 ntTSL 5 BASIC28.19■■■□□ 2.18e-8■■■□□ 15.1
YBX3P16989 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC23.68■■□□□ 1.388e-8■■■□□ 15.1
YBX3P16989 LTBP4-225ENST00000599225 281 ntTSL 321.78■■□□□ 1.084e-6■■■□□ 15.1
YBX3P16989 LTBP4-204ENST00000318809 1700 ntTSL 221.39■■□□□ 1.014e-6■■■□□ 15.1
YBX3P16989 LTBP4-220ENST00000598166 699 ntTSL 520.74■□□□□ 0.914e-6■■■□□ 15.1
YBX3P16989 LTBP4-212ENST00000595118 2446 ntTSL 218.28■□□□□ 0.524e-6■■■□□ 15.1
YBX3P16989 R3HDM2-206ENST00000429355 2266 ntTSL 516.56■□□□□ 0.244e-6■■■□□ 15.1
YBX3P16989 AC137834.1-201ENST00000548184 2107 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.274e-6■■■□□ 15.1
YBX3P16989 R3HDM2-203ENST00000393811 3778 ntTSL 1 (best)11.92□□□□□ -0.54e-6■■■□□ 15.1
YBX3P16989 NUP107-210ENST00000539373 278 ntTSL 37.47□□□□□ -1.213e-6■■■□□ 15.1
YBX3P16989 PSMD5-204ENST00000373920 569 ntTSL 57.38□□□□□ -1.232e-6■■■□□ 15.1
YBX3P16989 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC30.22■■■□□ 2.439e-9■■■□□ 15.1
YBX3P16989 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.799e-9■■■□□ 15.1
YBX3P16989 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.589e-9■■■□□ 15.1
YBX3P16989 BMP2K-202ENST00000389010 2741 ntTSL 1 (best)23.83■■□□□ 1.419e-9■■■□□ 15.1
YBX3P16989 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.249e-9■■■□□ 15.1
YBX3P16989 FBXO18-205ENST00000461504 835 ntTSL 511.85□□□□□ -0.519e-9■■■□□ 15.1
YBX3P16989 BMP2K-205ENST00000505725 566 ntTSL 37.58□□□□□ -1.29e-9■■■□□ 15.1
YBX3P16989 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.55■□□□□ 0.47e-7■■■□□ 15.1
YBX3P16989 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC15.89■□□□□ 0.137e-7■■■□□ 15.1
YBX3P16989 RTFDC1-202ENST00000357348 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.077e-7■■■□□ 15.1
YBX3P16989 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.091e-6■■■□□ 15.1
YBX3P16989 RPA2-204ENST00000419958 554 ntTSL 36.56□□□□□ -1.361e-6■■■□□ 15.1
YBX3P16989 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.921e-7■■■□□ 15.1
YBX3P16989 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.272e-6■■■□□ 15.1
YBX3P16989 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC21.82■■□□□ 1.082e-6■■■□□ 15.1
YBX3P16989 CSNK1D-217ENST00000581241 6094 ntTSL 214.73□□□□□ -0.052e-6■■■□□ 15.1
YBX3P16989 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.082e-6■■■□□ 15.1
YBX3P16989 TRIP13-202ENST00000508430 306 ntTSL 39.95□□□□□ -0.821e-6■■■□□ 15.1
YBX3P16989 GTSF1-202ENST00000546575 458 ntTSL 27.83□□□□□ -1.161e-10■■■□□ 15.1
YBX3P16989 PAPOLA-222ENST00000556787 806 ntTSL 27.34□□□□□ -1.231e-6■■■□□ 15.1
YBX3P16989 GTF2I-213ENST00000613513 538 ntTSL 426.16■■□□□ 1.781e-6■■■□□ 15.1
YBX3P16989 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.061e-6■■■□□ 15.1
YBX3P16989 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.061e-6■■■□□ 15.1
YBX3P16989 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.081e-6■■■□□ 15.1
YBX3P16989 GTF2I-218ENST00000620879 4352 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.381e-6■■■□□ 15.1
YBX3P16989 CSNK1G2-206ENST00000589861 756 ntTSL 532.26■■■□□ 2.751e-7■■■□□ 15.1
YBX3P16989 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.264e-24■■■□□ 15.1
YBX3P16989 ACSM3-207ENST00000562251 1931 ntTSL 27.91□□□□□ -1.142e-7■■■□□ 15.1
YBX3P16989 RPS2-203ENST00000526586 878 ntTSL 213.02□□□□□ -0.331e-62■■■□□ 15.1
YBX3P16989 TAF9-207ENST00000509462 761 ntAPPRIS ALT2 TSL 230.96■■■□□ 2.551e-9■■■□□ 15.1
YBX3P16989 SNRPB-203ENST00000474384 985 ntTSL 522.84■■□□□ 1.252e-9■■■□□ 15.1
YBX3P16989 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.942e-9■■■□□ 15.1
YBX3P16989 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.872e-9■■■□□ 15.1
YBX3P16989 DSP-203ENST00000506617 754 ntTSL 319■□□□□ 0.632e-11■■■□□ 15.1
YBX3P16989 ZNF581-202ENST00000585995 591 ntTSL 324.91■■□□□ 1.581e-8■■■□□ 15.1
YBX3P16989 AL137782.1-202ENST00000570285 386 ntTSL 59.68□□□□□ -0.862e-6■■■□□ 15.1
YBX3P16989 UCHL3-202ENST00000419068 824 ntTSL 58.13□□□□□ -1.112e-6■■■□□ 15.1
YBX3P16989 CTCFL-211ENST00000502686 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.12e-8■■■□□ 15.1
YBX3P16989 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.12e-8■■■□□ 15.1
YBX3P16989 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC14.06□□□□□ -0.162e-8■■■□□ 15.1
YBX3P16989 CTCFL-203ENST00000422109 2964 ntTSL 1 (best)14.06□□□□□ -0.162e-8■■■□□ 15.1
YBX3P16989 CTCFL-221ENST00000608903 2135 ntTSL 1 (best) BASIC13.91□□□□□ -0.182e-8■■■□□ 15.1
YBX3P16989 CTCFL-209ENST00000433949 2234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.22e-8■■■□□ 15.1
YBX3P16989 CTCFL-204ENST00000422869 2966 ntTSL 1 (best) BASIC12.9□□□□□ -0.342e-8■■■□□ 15.1
YBX3P16989 CTCFL-212ENST00000539382 2262 ntTSL 1 (best) BASIC12.78□□□□□ -0.362e-8■■■□□ 15.1
YBX3P16989 CTCFL-218ENST00000608440 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.392e-8■■■□□ 15.1
YBX3P16989 CTCFL-201ENST00000243914 3567 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.462e-8■■■□□ 15.1
YBX3P16989 CTCFL-217ENST00000608425 2915 ntTSL 1 (best) BASIC11.89□□□□□ -0.512e-8■■■□□ 15.1
YBX3P16989 CTCFL-202ENST00000371196 3491 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.522e-8■■■□□ 15.1
YBX3P16989 CTCFL-207ENST00000429804 3864 ntTSL 1 (best) BASIC11.03□□□□□ -0.642e-8■■■□□ 15.1
YBX3P16989 CTCFL-222ENST00000609232 3668 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.682e-8■■■□□ 15.1
YBX3P16989 CTCFL-216ENST00000608263 4040 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.712e-8■■■□□ 15.1
YBX3P16989 CTCFL-206ENST00000426658 3996 ntTSL 1 (best)10.33□□□□□ -0.762e-8■■■□□ 15.1
YBX3P16989 HYOU1-202ENST00000526656 862 ntTSL 331.85■■■□□ 2.691e-19■■■□□ 15.1
YBX3P16989 HYOU1-214ENST00000534233 711 ntTSL 229.46■■■□□ 2.311e-19■■■□□ 15.1
YBX3P16989 HYOU1-210ENST00000531968 550 ntTSL 419.34■□□□□ 0.691e-19■■■□□ 15.1
YBX3P16989 STK40-207ENST00000473733 629 ntTSL 314.99□□□□□ -0.012e-11■■■□□ 15.1
YBX3P16989 RPS4XP22-201ENST00000480755 780 ntBASIC4.51□□□□□ -1.693e-15■■■□□ 15.1
YBX3P16989 YWHAQ-203ENST00000446619 665 ntTSL 327.23■■□□□ 1.951e-11■■■□□ 15.1
YBX3P16989 RPL34-207ENST00000506397 549 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.071e-70■■■□□ 15.1
YBX3P16989 RPL34-205ENST00000503574 2627 ntTSL 210.56□□□□□ -0.721e-70■■■□□ 15.1
Retrieved 100 of 29,075 protein–RNA pairs in 538.8 ms