RNA–Protein interactions for RNA: ENST00000272091.7

SDE2-201, Transcript of SDE2 telomere maintenance homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDE2, Length 3,975 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDE2-201ENST00000272091 NISCHQ9Y2I1 1504 aa27.55■■■□□ 2
SDE2-201ENST00000272091 CCDC180Q9P1Z9 1646 aa24■■□□□ 1.43
SDE2-201ENST00000272091 ZCCHC6Q5VYS8 1495 aaKnown RBP23.18■■□□□ 1.3
SDE2-201ENST00000272091 DCAF1Q9Y4B6 1507 aa22.76■■□□□ 1.23
SDE2-201ENST00000272091 ABCC9O60706 1549 aa22.59■■□□□ 1.21
SDE2-201ENST00000272091 DCAF8L2P0C7V8 631 aa22.58■■□□□ 1.21
SDE2-201ENST00000272091 SHROOM4Q9ULL8 1493 aa22.52■■□□□ 1.2
SDE2-201ENST00000272091 MYO15BQ96JP2 1530 aa22.44■■□□□ 1.18
SDE2-201ENST00000272091 NACADO15069 1562 aa22.27■■□□□ 1.16
SDE2-201ENST00000272091 SCRIBQ14160 1630 aa22.11■■□□□ 1.13
SDE2-201ENST00000272091 RB1CC1Q8TDY2 1594 aa22.06■■□□□ 1.12
SDE2-201ENST00000272091 UNC13AQ9UPW8 1703 aa21.8■■□□□ 1.08
SDE2-201ENST00000272091 SUPT5HO00267 1087 aaKnown RBP21.64■■□□□ 1.06
SDE2-201ENST00000272091 BICRAQ9NZM4 1560 aa21.52■■□□□ 1.04
SDE2-201ENST00000272091 CECR2Q9BXF3 1484 aa21.45■■□□□ 1.02
SDE2-201ENST00000272091 RSF1Q96T23 1441 aaPredicted RBP21.41■■□□□ 1.02
SDE2-201ENST00000272091 MROH2BQ7Z745 1585 aa21.33■■□□□ 1.01
SDE2-201ENST00000272091 PABPN1Q86U42 306 aaKnown RBP eCLIP21.3■■□□□ 1
SDE2-201ENST00000272091 BAZ1AQ9NRL2 1556 aaPredicted RBP21.23■□□□□ 0.99
SDE2-201ENST00000272091 SMARCA4P51532 1647 aa21.19■□□□□ 0.98
SDE2-201ENST00000272091 WIZO95785 1651 aa21.19■□□□□ 0.98
SDE2-201ENST00000272091 PEG3Q9GZU2 1588 aa20.92■□□□□ 0.94
SDE2-201ENST00000272091 TOP2AP11388 1531 aaKnown RBP20.91■□□□□ 0.94
SDE2-201ENST00000272091 CHIC1Q5VXU3 224 aa20.81■□□□□ 0.92
SDE2-201ENST00000272091 EIF4G1Q04637 1599 aaKnown RBP20.8■□□□□ 0.92
SDE2-201ENST00000272091 ATAD2BQ9ULI0 1458 aa20.78■□□□□ 0.92
SDE2-201ENST00000272091 SMARCA2P51531 1590 aa20.76■□□□□ 0.91
SDE2-201ENST00000272091 CCDC88BA6NC98 1476 aa20.7■□□□□ 0.9
SDE2-201ENST00000272091 BAZ1BQ9UIG0 1483 aaKnown RBP20.63■□□□□ 0.89
SDE2-201ENST00000272091 HMGXB3Q12766 1538 aa20.57■□□□□ 0.88
SDE2-201ENST00000272091 NCAPD3P42695 1498 aa20.56■□□□□ 0.88
SDE2-201ENST00000272091 CC2D2AQ9P2K1 1620 aa20.49■□□□□ 0.87
SDE2-201ENST00000272091 ABCC8Q09428 1581 aa20.34■□□□□ 0.85
SDE2-201ENST00000272091 TRIM41Q8WV44 630 aa20.3■□□□□ 0.84
SDE2-201ENST00000272091 CFTRP13569 1480 aa20.15■□□□□ 0.82
SDE2-201ENST00000272091 PRDM2Q13029 1718 aa20.14■□□□□ 0.81
SDE2-201ENST00000272091 SYNJ1O43426 1573 aa20.12■□□□□ 0.81
SDE2-201ENST00000272091 WRNQ14191 1432 aaPredicted RBP eCLIP20.1■□□□□ 0.81
SDE2-201ENST00000272091 LOC105371045A0A1W2PR82 267 aa20.04■□□□□ 0.8
SDE2-201ENST00000272091 CADPSQ9ULU8 1353 aa20.02■□□□□ 0.79
SDE2-201ENST00000272091 DNAJC5BQ9UF47 199 aa20■□□□□ 0.79
SDE2-201ENST00000272091 BIVM-ERCC5R4GMW8 1640 aa20■□□□□ 0.79
SDE2-201ENST00000272091 TOP2BQ02880 1626 aa19.99■□□□□ 0.79
SDE2-201ENST00000272091 FAM9AQ8IZU1 332 aaPredicted RBP19.98■□□□□ 0.79
SDE2-201ENST00000272091 SOGA1O94964 1423 aa19.94■□□□□ 0.78
SDE2-201ENST00000272091 CUX1P39880 1505 aa19.94■□□□□ 0.78
SDE2-201ENST00000272091 NESP48681 1621 aa19.92■□□□□ 0.78
SDE2-201ENST00000272091 RUSC2Q8N2Y8 1516 aa19.91■□□□□ 0.78
SDE2-201ENST00000272091 LAMC3Q9Y6N6 1575 aa19.85■□□□□ 0.77
SDE2-201ENST00000272091 FANCD2Q9BXW9 1451 aa19.83■□□□□ 0.76
SDE2-201ENST00000272091 EEA1Q15075 1411 aa19.8■□□□□ 0.76
SDE2-201ENST00000272091 EHMT2Q96KQ7 1210 aa19.72■□□□□ 0.75
SDE2-201ENST00000272091 KIF21AQ7Z4S6 1674 aa19.71■□□□□ 0.75
SDE2-201ENST00000272091 CSRNP3Q8WYN3 585 aa19.69■□□□□ 0.74
SDE2-201ENST00000272091 DNMBPQ6XZF7 1577 aa19.69■□□□□ 0.74
SDE2-201ENST00000272091 CEP164Q9UPV0 1460 aa19.67■□□□□ 0.74
SDE2-201ENST00000272091 FGD5Q6ZNL6 1462 aa19.66■□□□□ 0.74
SDE2-201ENST00000272091 TOPBP1Q92547 1522 aa19.65■□□□□ 0.74
SDE2-201ENST00000272091 KIF21BO75037 1637 aa19.65■□□□□ 0.74
SDE2-201ENST00000272091 URB2Q14146 1524 aaKnown RBP19.63■□□□□ 0.73
SDE2-201ENST00000272091 PDS5BQ9NTI5 1447 aa19.62■□□□□ 0.73
SDE2-201ENST00000272091 GOLGA3Q08378 1498 aa19.58■□□□□ 0.72
SDE2-201ENST00000272091 POLA1P09884 1462 aaPredicted RBP19.56■□□□□ 0.72
SDE2-201ENST00000272091 KIF27Q86VH2 1401 aa19.54■□□□□ 0.72
SDE2-201ENST00000272091 TNIKQ9UKE5 1360 aa19.53■□□□□ 0.72
SDE2-201ENST00000272091 RAPGEF2Q9Y4G8 1499 aa19.52■□□□□ 0.72
SDE2-201ENST00000272091 WDR97A6NE52 1622 aa19.52■□□□□ 0.72
SDE2-201ENST00000272091 CUX2O14529 1486 aa19.52■□□□□ 0.71
SDE2-201ENST00000272091 RAD54L2Q9Y4B4 1467 aa19.52■□□□□ 0.71
SDE2-201ENST00000272091 PRXQ9BXM0 1461 aa19.51■□□□□ 0.71
SDE2-201ENST00000272091 ABCA10Q8WWZ4 1543 aa19.48■□□□□ 0.71
SDE2-201ENST00000272091 ERICH3Q5RHP9 1530 aa19.47■□□□□ 0.71
SDE2-201ENST00000272091 CEP162Q5TB80 1403 aa19.46■□□□□ 0.71
SDE2-201ENST00000272091 MRC2Q9UBG0 1479 aa19.43■□□□□ 0.7
SDE2-201ENST00000272091 IGF1RP08069 1367 aa19.42■□□□□ 0.7
SDE2-201ENST00000272091 UBTFP17480 764 aaKnown RBP19.41■□□□□ 0.7
SDE2-201ENST00000272091 TARBP1Q13395 1621 aaKnown RBP19.4■□□□□ 0.7
SDE2-201ENST00000272091 ABCA5Q8WWZ7 1642 aa19.38■□□□□ 0.69
SDE2-201ENST00000272091 WDR62O43379 1518 aa19.38■□□□□ 0.69
SDE2-201ENST00000272091 THOC2Q8NI27 1593 aaKnown RBP19.35■□□□□ 0.69
SDE2-201ENST00000272091 CARMIL1Q5VZK9 1371 aa19.28■□□□□ 0.68
SDE2-201ENST00000272091 CUL7Q14999 1698 aa19.28■□□□□ 0.68
SDE2-201ENST00000272091 ERCC6Q03468 1493 aa19.28■□□□□ 0.68
SDE2-201ENST00000272091 TDRD9Q8NDG6 1382 aaKnown RBP19.26■□□□□ 0.67
SDE2-201ENST00000272091 CLIP1P30622 1438 aa19.26■□□□□ 0.67
SDE2-201ENST00000272091 GAPVD1Q14C86 1478 aa19.24■□□□□ 0.67
SDE2-201ENST00000272091 PBRM1Q86U86 1689 aa19.23■□□□□ 0.67
SDE2-201ENST00000272091 IFT140Q96RY7 1462 aa19.19■□□□□ 0.66
SDE2-201ENST00000272091 ZNF608Q9ULD9 1512 aaPredicted RBP19.17■□□□□ 0.66
SDE2-201ENST00000272091 AQRO60306 1485 aaKnown RBP eCLIP19.16■□□□□ 0.661e-6■■■■□ 24.9
SDE2-201ENST00000272091 ARAP1Q96P48 1450 aa19.16■□□□□ 0.66
SDE2-201ENST00000272091 PCGF6Q9BYE7 350 aa19.14■□□□□ 0.65
SDE2-201ENST00000272091 CTTNBP2Q8WZ74 1663 aa19.13■□□□□ 0.65
SDE2-201ENST00000272091 VPS8Q8N3P4 1428 aa19.12■□□□□ 0.65
SDE2-201ENST00000272091 RANGAP1P46060 587 aaPredicted RBP19.12■□□□□ 0.65
SDE2-201ENST00000272091 ARHGAP35Q9NRY4 1499 aa19.11■□□□□ 0.65
SDE2-201ENST00000272091 EIF4G3O43432 1585 aaKnown RBP19.11■□□□□ 0.65
SDE2-201ENST00000272091 ADAMTS12P58397 1594 aa19.1■□□□□ 0.65
SDE2-201ENST00000272091 TRIM26Q12899 539 aaPredicted RBP19.09■□□□□ 0.65
SDE2-201ENST00000272091 PPARGC1BQ86YN6 1023 aaKnown RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms