RNA–Protein interactions for RNA: ENST00000608440.5

CTCFL-218, Transcript of CCCTC-binding factor like, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CTCFL, Length 2,749 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFL-218ENST00000608440 NISCHQ9Y2I1 1504 aa24.45■■□□□ 1.51
CTCFL-218ENST00000608440 PELP1Q8IZL8 1130 aaKnown RBP21.7■■□□□ 1.06
CTCFL-218ENST00000608440 HRCP23327 699 aa21.47■■□□□ 1.03
CTCFL-218ENST00000608440 CCDC180Q9P1Z9 1646 aa21.23■□□□□ 0.99
CTCFL-218ENST00000608440 PPARGC1BQ86YN6 1023 aaKnown RBP21.2■□□□□ 0.98
CTCFL-218ENST00000608440 MYT1Q01538 1121 aa21.02■□□□□ 0.96
CTCFL-218ENST00000608440 PCGF6Q9BYE7 350 aa20.82■□□□□ 0.92
CTCFL-218ENST00000608440 SCAF1Q9H7N4 1312 aaKnown RBP20.81■□□□□ 0.92
CTCFL-218ENST00000608440 ZCCHC6Q5VYS8 1495 aaKnown RBP20.55■□□□□ 0.88
CTCFL-218ENST00000608440 DCAF8L2P0C7V8 631 aa20.36■□□□□ 0.85
CTCFL-218ENST00000608440 ABCC9O60706 1549 aa20.24■□□□□ 0.83
CTCFL-218ENST00000608440 SHROOM4Q9ULL8 1493 aa20.17■□□□□ 0.82
CTCFL-218ENST00000608440 MYO15BQ96JP2 1530 aa20.13■□□□□ 0.81
CTCFL-218ENST00000608440 DCAF1Q9Y4B6 1507 aa20.13■□□□□ 0.81
CTCFL-218ENST00000608440 SUPT5HO00267 1087 aaKnown RBP20.02■□□□□ 0.8
CTCFL-218ENST00000608440 ACIN1Q9UKV3 1341 aaKnown RBP20■□□□□ 0.79
CTCFL-218ENST00000608440 NEUROD1Q13562 356 aa19.98■□□□□ 0.79
CTCFL-218ENST00000608440 GTF3C3Q9Y5Q9 886 aa19.97■□□□□ 0.79
CTCFL-218ENST00000608440 TTBK1Q5TCY1 1321 aaPredicted RBP19.87■□□□□ 0.77
CTCFL-218ENST00000608440 BCL11AQ9H165 835 aa19.81■□□□□ 0.76
CTCFL-218ENST00000608440 NACADO15069 1562 aa19.79■□□□□ 0.76
CTCFL-218ENST00000608440 ZEB1P37275 1124 aaPredicted RBP19.78■□□□□ 0.76
CTCFL-218ENST00000608440 TRIM26Q12899 539 aaPredicted RBP19.78■□□□□ 0.76
CTCFL-218ENST00000608440 CHIC1Q5VXU3 224 aa19.78■□□□□ 0.76
CTCFL-218ENST00000608440 SCRIBQ14160 1630 aa19.69■□□□□ 0.74
CTCFL-218ENST00000608440 FAM9AQ8IZU1 332 aaPredicted RBP19.67■□□□□ 0.74
CTCFL-218ENST00000608440 CENPBP07199 599 aaPredicted RBP19.65■□□□□ 0.74
CTCFL-218ENST00000608440 RB1CC1Q8TDY2 1594 aa19.64■□□□□ 0.73
CTCFL-218ENST00000608440 PRKCSHP14314 528 aaPredicted RBP19.59■□□□□ 0.73
CTCFL-218ENST00000608440 LOC105371045A0A1W2PR82 267 aa19.57■□□□□ 0.72
CTCFL-218ENST00000608440 DIEXFQ68CQ4 756 aaKnown RBP19.31■□□□□ 0.68
CTCFL-218ENST00000608440 ANP32EQ9BTT0 268 aa19.27■□□□□ 0.67
CTCFL-218ENST00000608440 YTHDC1Q96MU7 727 aaKnown RBP19.25■□□□□ 0.67
CTCFL-218ENST00000608440 UNC13AQ9UPW8 1703 aa19.25■□□□□ 0.67
CTCFL-218ENST00000608440 CSRNP3Q8WYN3 585 aa19.17■□□□□ 0.66
CTCFL-218ENST00000608440 PABPN1Q86U42 306 aaKnown RBP eCLIP19.13■□□□□ 0.65
CTCFL-218ENST00000608440 BICRAQ9NZM4 1560 aa19.08■□□□□ 0.64
CTCFL-218ENST00000608440 CECR2Q9BXF3 1484 aa19.07■□□□□ 0.64
CTCFL-218ENST00000608440 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.03■□□□□ 0.64
CTCFL-218ENST00000608440 RSF1Q96T23 1441 aaPredicted RBP19.02■□□□□ 0.64
CTCFL-218ENST00000608440 ERICH6Q7L0X2 663 aa18.98■□□□□ 0.63
CTCFL-218ENST00000608440 CCER1Q8TC90 406 aaPredicted RBP18.98■□□□□ 0.63
CTCFL-218ENST00000608440 MROH2BQ7Z745 1585 aa18.95■□□□□ 0.62
CTCFL-218ENST00000608440 TSHZ2Q9NRE2 1034 aa18.89■□□□□ 0.61
CTCFL-218ENST00000608440 BAZ1AQ9NRL2 1556 aaPredicted RBP18.87■□□□□ 0.61
CTCFL-218ENST00000608440 TRIM41Q8WV44 630 aa18.81■□□□□ 0.6
CTCFL-218ENST00000608440 SMARCA4P51532 1647 aa18.8■□□□□ 0.6
CTCFL-218ENST00000608440 WIZO95785 1651 aa18.79■□□□□ 0.6
CTCFL-218ENST00000608440 APLP2Q06481 763 aa18.78■□□□□ 0.6
CTCFL-218ENST00000608440 MIER1Q8N108 512 aa18.76■□□□□ 0.59
CTCFL-218ENST00000608440 SUPT16HQ9Y5B9 1047 aaKnown RBP18.76■□□□□ 0.59
CTCFL-218ENST00000608440 EHMT2Q96KQ7 1210 aa18.7■□□□□ 0.58
CTCFL-218ENST00000608440 ZNF316A6NFI3 1004 aaPredicted RBP18.69■□□□□ 0.58
CTCFL-218ENST00000608440 ANO8Q9HCE9 1232 aaPredicted RBP18.58■□□□□ 0.56
CTCFL-218ENST00000608440 TOP2AP11388 1531 aaKnown RBP18.55■□□□□ 0.56
CTCFL-218ENST00000608440 EIF4G1Q04637 1599 aaKnown RBP18.51■□□□□ 0.55
CTCFL-218ENST00000608440 PEG3Q9GZU2 1588 aa18.5■□□□□ 0.55
CTCFL-218ENST00000608440 ATAD2BQ9ULI0 1458 aa18.5■□□□□ 0.55
CTCFL-218ENST00000608440 CLSPNQ9HAW4 1339 aa18.45■□□□□ 0.54
CTCFL-218ENST00000608440 SMARCA2P51531 1590 aa18.45■□□□□ 0.54
CTCFL-218ENST00000608440 BCANQ96GW7 911 aa18.44■□□□□ 0.54
CTCFL-218ENST00000608440 BAZ1BQ9UIG0 1483 aaKnown RBP18.41■□□□□ 0.54
CTCFL-218ENST00000608440 CCDC88BA6NC98 1476 aa18.39■□□□□ 0.54
CTCFL-218ENST00000608440 RBM19Q9Y4C8 960 aaKnown RBP18.38■□□□□ 0.53
CTCFL-218ENST00000608440 MSH5O43196 834 aa18.32■□□□□ 0.52
CTCFL-218ENST00000608440 NCAPD3P42695 1498 aa18.29■□□□□ 0.52
CTCFL-218ENST00000608440 CCDC136Q96JN2 1154 aa18.28■□□□□ 0.52
CTCFL-218ENST00000608440 SALL2Q9Y467 1007 aaPredicted RBP18.28■□□□□ 0.52
CTCFL-218ENST00000608440 HMGXB3Q12766 1538 aa18.26■□□□□ 0.51
CTCFL-218ENST00000608440 CC2D2AQ9P2K1 1620 aa18.24■□□□□ 0.51
CTCFL-218ENST00000608440 DEKP35659 375 aaKnown RBP18.21■□□□□ 0.51
CTCFL-218ENST00000608440 FKBP8Q14318 412 aa18.17■□□□□ 0.5
CTCFL-218ENST00000608440 ITGAEP38570 1179 aa18.14■□□□□ 0.49
CTCFL-218ENST00000608440 UBE2Q2Q8WVN8 375 aa18.08■□□□□ 0.49
CTCFL-218ENST00000608440 ABCC8Q09428 1581 aa18.08■□□□□ 0.48
CTCFL-218ENST00000608440 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.06■□□□□ 0.48
CTCFL-218ENST00000608440 MYT1LQ9UL68 1186 aa17.99■□□□□ 0.47
CTCFL-218ENST00000608440 RTN4Q9NQC3 1192 aaKnown RBP17.97■□□□□ 0.47
CTCFL-218ENST00000608440 KCNH8Q96L42 1107 aa17.96■□□□□ 0.47
CTCFL-218ENST00000608440 FANCIQ9NVI1 1328 aa17.93■□□□□ 0.46
CTCFL-218ENST00000608440 NEFLP07196 543 aa17.92■□□□□ 0.46
CTCFL-218ENST00000608440 ERICH6BQ5W0A0 696 aa17.92■□□□□ 0.46
CTCFL-218ENST00000608440 CFTRP13569 1480 aa17.91■□□□□ 0.46
CTCFL-218ENST00000608440 NBR1Q14596 966 aa17.91■□□□□ 0.46
CTCFL-218ENST00000608440 WRNQ14191 1432 aaPredicted RBP eCLIP17.91■□□□□ 0.46
CTCFL-218ENST00000608440 DNAJC5BQ9UF47 199 aa17.9■□□□□ 0.46
CTCFL-218ENST00000608440 IL27Q8NEV9 243 aa17.89■□□□□ 0.45
CTCFL-218ENST00000608440 HNRNPUL2Q1KMD3 747 aaKnown RBP17.87■□□□□ 0.45
CTCFL-218ENST00000608440 CADPSQ9ULU8 1353 aa17.86■□□□□ 0.45
CTCFL-218ENST00000608440 SYNJ1O43426 1573 aa17.85■□□□□ 0.45
CTCFL-218ENST00000608440 EIF5BO60841 1220 aaKnown RBP17.83■□□□□ 0.45
CTCFL-218ENST00000608440 NESP48681 1621 aa17.78■□□□□ 0.44
CTCFL-218ENST00000608440 CDK11AQ9UQ88 783 aaPredicted RBP17.76■□□□□ 0.43
CTCFL-218ENST00000608440 SOGA1O94964 1423 aa17.74■□□□□ 0.43
CTCFL-218ENST00000608440 PRDM2Q13029 1718 aa17.74■□□□□ 0.43
CTCFL-218ENST00000608440 PKNOX2Q96KN3 472 aa17.73■□□□□ 0.43
CTCFL-218ENST00000608440 TOP2BQ02880 1626 aa17.71■□□□□ 0.43
CTCFL-218ENST00000608440 CUX1P39880 1505 aa17.71■□□□□ 0.43
CTCFL-218ENST00000608440 FANCD2Q9BXW9 1451 aa17.69■□□□□ 0.42
CTCFL-218ENST00000608440 RUSC2Q8N2Y8 1516 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms