RNA–Protein interactions for RNA: ENST00000426658.6

CTCFL-206, Transcript of CCCTC-binding factor like, humanhuman

TSL 1 (best)

Gene CTCFL, Length 3,996 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFL-206ENST00000426658 NISCHQ9Y2I1 1504 aa19.25■□□□□ 0.67
CTCFL-206ENST00000426658 DCAF8L2P0C7V8 631 aa17.99■□□□□ 0.47
CTCFL-206ENST00000426658 SHROOM4Q9ULL8 1493 aa17.5■□□□□ 0.39
CTCFL-206ENST00000426658 SUPT5HO00267 1087 aaKnown RBP17.48■□□□□ 0.39
CTCFL-206ENST00000426658 HRCP23327 699 aa16.87■□□□□ 0.29
CTCFL-206ENST00000426658 PCGF6Q9BYE7 350 aa16.8■□□□□ 0.28
CTCFL-206ENST00000426658 CHIC1Q5VXU3 224 aa16.63■□□□□ 0.25
CTCFL-206ENST00000426658 EHMT2Q96KQ7 1210 aa16.62■□□□□ 0.25
CTCFL-206ENST00000426658 PPARGC1BQ86YN6 1023 aaKnown RBP16.53■□□□□ 0.24
CTCFL-206ENST00000426658 MYO15BQ96JP2 1530 aa16.42■□□□□ 0.22
CTCFL-206ENST00000426658 FAM9AQ8IZU1 332 aaPredicted RBP16.36■□□□□ 0.21
CTCFL-206ENST00000426658 LOC105371045A0A1W2PR82 267 aa16.3■□□□□ 0.2
CTCFL-206ENST00000426658 ZCCHC6Q5VYS8 1495 aaKnown RBP16.29■□□□□ 0.2
CTCFL-206ENST00000426658 TRIM26Q12899 539 aaPredicted RBP16.25■□□□□ 0.19
CTCFL-206ENST00000426658 PELP1Q8IZL8 1130 aaKnown RBP16.18■□□□□ 0.18
CTCFL-206ENST00000426658 ZEB1P37275 1124 aaPredicted RBP16.16■□□□□ 0.18
CTCFL-206ENST00000426658 DCAF1Q9Y4B6 1507 aa16.15■□□□□ 0.18
CTCFL-206ENST00000426658 TTBK1Q5TCY1 1321 aaPredicted RBP16.08■□□□□ 0.16
CTCFL-206ENST00000426658 TRIM41Q8WV44 630 aa16.02■□□□□ 0.16
CTCFL-206ENST00000426658 CCDC180Q9P1Z9 1646 aa15.94■□□□□ 0.14
CTCFL-206ENST00000426658 SCAF1Q9H7N4 1312 aaKnown RBP15.79■□□□□ 0.12
CTCFL-206ENST00000426658 CCER1Q8TC90 406 aaPredicted RBP15.76■□□□□ 0.11
CTCFL-206ENST00000426658 CENPBP07199 599 aaPredicted RBP15.68■□□□□ 0.1
CTCFL-206ENST00000426658 ABCC9O60706 1549 aa15.66■□□□□ 0.1
CTCFL-206ENST00000426658 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.62■□□□□ 0.09
CTCFL-206ENST00000426658 RANGAP1P46060 587 aaPredicted RBP15.61■□□□□ 0.09
CTCFL-206ENST00000426658 ACIN1Q9UKV3 1341 aaKnown RBP15.59■□□□□ 0.09
CTCFL-206ENST00000426658 PABPN1Q86U42 306 aaKnown RBP eCLIP15.55■□□□□ 0.08
CTCFL-206ENST00000426658 MYT1Q01538 1121 aa15.55■□□□□ 0.08
CTCFL-206ENST00000426658 YTHDC1Q96MU7 727 aaKnown RBP15.53■□□□□ 0.08
CTCFL-206ENST00000426658 DIEXFQ68CQ4 756 aaKnown RBP15.53■□□□□ 0.08
CTCFL-206ENST00000426658 GTF3C3Q9Y5Q9 886 aa15.51■□□□□ 0.07
CTCFL-206ENST00000426658 NEUROD1Q13562 356 aa15.5■□□□□ 0.07
CTCFL-206ENST00000426658 UBTFP17480 764 aaKnown RBP15.5■□□□□ 0.07
CTCFL-206ENST00000426658 RSF1Q96T23 1441 aaPredicted RBP15.48■□□□□ 0.07
CTCFL-206ENST00000426658 APLP2Q06481 763 aa15.39■□□□□ 0.05
CTCFL-206ENST00000426658 SCRIBQ14160 1630 aa15.36■□□□□ 0.05
CTCFL-206ENST00000426658 HNRNPUL2Q1KMD3 747 aaKnown RBP15.31■□□□□ 0.04
CTCFL-206ENST00000426658 RB1CC1Q8TDY2 1594 aa15.3■□□□□ 0.04
CTCFL-206ENST00000426658 ZNF316A6NFI3 1004 aaPredicted RBP15.25■□□□□ 0.03
CTCFL-206ENST00000426658 ATP1B4Q9UN42 357 aaPredicted RBP15.12■□□□□ 0.01
CTCFL-206ENST00000426658 CECR2Q9BXF3 1484 aa15.09■□□□□ 0.01
CTCFL-206ENST00000426658 ITGAEP38570 1179 aa15.08■□□□□ 0
CTCFL-206ENST00000426658 MIER1Q8N108 512 aa15.05■□□□□ 0
CTCFL-206ENST00000426658 CEP162Q5TB80 1403 aa15.04■□□□□ -0
CTCFL-206ENST00000426658 MROH2BQ7Z745 1585 aa15.02■□□□□ -0
CTCFL-206ENST00000426658 CSRNP3Q8WYN3 585 aa15.02■□□□□ -0
CTCFL-206ENST00000426658 TNIKQ9UKE5 1360 aa14.95□□□□□ -0.02
CTCFL-206ENST00000426658 WRNQ14191 1432 aaPredicted RBP eCLIP14.94□□□□□ -0.02
CTCFL-206ENST00000426658 WIZO95785 1651 aa14.92□□□□□ -0.02
CTCFL-206ENST00000426658 CCDC88BA6NC98 1476 aa14.88□□□□□ -0.03
CTCFL-206ENST00000426658 SOGA1O94964 1423 aa14.88□□□□□ -0.03
CTCFL-206ENST00000426658 ABCC8Q09428 1581 aa14.86□□□□□ -0.03
CTCFL-206ENST00000426658 EEA1Q15075 1411 aa14.84□□□□□ -0.03
CTCFL-206ENST00000426658 NACADO15069 1562 aa14.84□□□□□ -0.03
CTCFL-206ENST00000426658 GOLGA3Q08378 1498 aa14.81□□□□□ -0.04
CTCFL-206ENST00000426658 CLSPNQ9HAW4 1339 aa14.8□□□□□ -0.04
CTCFL-206ENST00000426658 BAZ1AQ9NRL2 1556 aaPredicted RBP14.8□□□□□ -0.04
CTCFL-206ENST00000426658 BCANQ96GW7 911 aa14.76□□□□□ -0.05
CTCFL-206ENST00000426658 CLIP1P30622 1438 aa14.75□□□□□ -0.05
CTCFL-206ENST00000426658 SUPT16HQ9Y5B9 1047 aaKnown RBP14.72□□□□□ -0.05
CTCFL-206ENST00000426658 RUSC2Q8N2Y8 1516 aa14.71□□□□□ -0.05
CTCFL-206ENST00000426658 FBLN2P98095 1184 aa14.69□□□□□ -0.06
CTCFL-206ENST00000426658 TOP2AP11388 1531 aaKnown RBP14.69□□□□□ -0.06
CTCFL-206ENST00000426658 NEFLP07196 543 aa14.67□□□□□ -0.06
CTCFL-206ENST00000426658 CEP164Q9UPV0 1460 aa14.67□□□□□ -0.06
CTCFL-206ENST00000426658 FAM50AQ14320 339 aaKnown RBP14.64□□□□□ -0.07
CTCFL-206ENST00000426658 VPS8Q8N3P4 1428 aa14.63□□□□□ -0.07
CTCFL-206ENST00000426658 CNGB1Q14028 1251 aaPredicted RBP14.6□□□□□ -0.07
CTCFL-206ENST00000426658 ANP32EQ9BTT0 268 aa14.6□□□□□ -0.07
CTCFL-206ENST00000426658 EIF4G1Q04637 1599 aaKnown RBP14.59□□□□□ -0.07
CTCFL-206ENST00000426658 SMARCA2P51531 1590 aa14.58□□□□□ -0.08
CTCFL-206ENST00000426658 P3H3Q8IVL6 736 aa14.58□□□□□ -0.08
CTCFL-206ENST00000426658 TSHZ2Q9NRE2 1034 aa14.58□□□□□ -0.08
CTCFL-206ENST00000426658 FKBP8Q14318 412 aa14.56□□□□□ -0.08
CTCFL-206ENST00000426658 MYT1LQ9UL68 1186 aa14.56□□□□□ -0.08
CTCFL-206ENST00000426658 ERICH6Q7L0X2 663 aa14.53□□□□□ -0.08
CTCFL-206ENST00000426658 SMARCA4P51532 1647 aa14.53□□□□□ -0.08
CTCFL-206ENST00000426658 HIRIP3Q9BW71 556 aaPredicted RBP14.52□□□□□ -0.08
CTCFL-206ENST00000426658 DHX57Q6P158 1386 aaKnown RBP14.51□□□□□ -0.09
CTCFL-206ENST00000426658 DDX10Q13206 875 aaKnown RBP14.49□□□□□ -0.09
CTCFL-206ENST00000426658 RAPGEF2Q9Y4G8 1499 aa14.46□□□□□ -0.09
CTCFL-206ENST00000426658 ARID3CA6NKF2 412 aa14.46□□□□□ -0.09
CTCFL-206ENST00000426658 KANK4Q5T7N3 995 aaPredicted RBP14.45□□□□□ -0.1
CTCFL-206ENST00000426658 POLR3GLQ9BT43 218 aa14.44□□□□□ -0.1
CTCFL-206ENST00000426658 BAZ1BQ9UIG0 1483 aaKnown RBP14.43□□□□□ -0.1
CTCFL-206ENST00000426658 ANP32CO43423 234 aa14.42□□□□□ -0.1
CTCFL-206ENST00000426658 KCNH8Q96L42 1107 aa14.42□□□□□ -0.1
CTCFL-206ENST00000426658 TRIM52Q96A61 297 aa14.42□□□□□ -0.1
CTCFL-206ENST00000426658 KIF21BO75037 1637 aa14.41□□□□□ -0.1
CTCFL-206ENST00000426658 BCL11AQ9H165 835 aa14.39□□□□□ -0.11
CTCFL-206ENST00000426658 CCNB3Q8WWL7 1395 aa14.37□□□□□ -0.11
CTCFL-206ENST00000426658 SYNJ1O43426 1573 aa14.34□□□□□ -0.11
CTCFL-206ENST00000426658 RBM19Q9Y4C8 960 aaKnown RBP14.33□□□□□ -0.12
CTCFL-206ENST00000426658 SIN3AQ96ST3 1273 aa14.31□□□□□ -0.12
CTCFL-206ENST00000426658 CDK11AQ9UQ88 783 aaPredicted RBP14.3□□□□□ -0.12
CTCFL-206ENST00000426658 RAB3GAP2Q9H2M9 1393 aa14.29□□□□□ -0.12
CTCFL-206ENST00000426658 IRX6P78412 446 aaPredicted RBP14.28□□□□□ -0.12
CTCFL-206ENST00000426658 RRBP1Q9P2E9 1410 aaKnown RBP14.24□□□□□ -0.13
CTCFL-206ENST00000426658 KIF27Q86VH2 1401 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 233 ms