RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 NISCHQ9Y2I1 1504 aa50.51■■■■■ 5.68
PDLIM4-206ENST00000474421 CCDC180Q9P1Z9 1646 aa45.25■■■■■ 4.83
PDLIM4-206ENST00000474421 ABCC9O60706 1549 aa44.86■■■■■ 4.77
PDLIM4-206ENST00000474421 RB1CC1Q8TDY2 1594 aa42.92■■■■■ 4.46
PDLIM4-206ENST00000474421 NACADO15069 1562 aa42.71■■■■■ 4.43
PDLIM4-206ENST00000474421 DCAF8L2P0C7V8 631 aa42.48■■■■■ 4.39
PDLIM4-206ENST00000474421 MYO15BQ96JP2 1530 aa42.25■■■■■ 4.35
PDLIM4-206ENST00000474421 ZCCHC6Q5VYS8 1495 aaKnown RBP41.92■■■■■ 4.3
PDLIM4-206ENST00000474421 UNC13AQ9UPW8 1703 aa41.89■■■■■ 4.3
PDLIM4-206ENST00000474421 PABPN1Q86U42 306 aaKnown RBP eCLIP41.8■■■■■ 4.28
PDLIM4-206ENST00000474421 DCAF1Q9Y4B6 1507 aa41.79■■■■■ 4.28
PDLIM4-206ENST00000474421 DNAJC5BQ9UF47 199 aa41.76■■■■■ 4.28
PDLIM4-206ENST00000474421 BICRAQ9NZM4 1560 aa41.58■■■■■ 4.25
PDLIM4-206ENST00000474421 SHROOM4Q9ULL8 1493 aa41.19■■■■■ 4.18
PDLIM4-206ENST00000474421 SCRIBQ14160 1630 aa41.17■■■■■ 4.18
PDLIM4-206ENST00000474421 EIF4G1Q04637 1599 aaKnown RBP40.57■■■■■ 4.09
PDLIM4-206ENST00000474421 CC2D2AQ9P2K1 1620 aa40.57■■■■■ 4.09
PDLIM4-206ENST00000474421 CECR2Q9BXF3 1484 aa40.42■■■■■ 4.06
PDLIM4-206ENST00000474421 NCAPD3P42695 1498 aa39.4■■■■□ 3.9
PDLIM4-206ENST00000474421 SMARCA4P51532 1647 aa39.33■■■■□ 3.89
PDLIM4-206ENST00000474421 ATAD2BQ9ULI0 1458 aa39.3■■■■□ 3.88
PDLIM4-206ENST00000474421 SMARCA2P51531 1590 aa39.25■■■■□ 3.87
PDLIM4-206ENST00000474421 BAZ1AQ9NRL2 1556 aaPredicted RBP39.22■■■■□ 3.87
PDLIM4-206ENST00000474421 HMGXB3Q12766 1538 aa39.14■■■■□ 3.86
PDLIM4-206ENST00000474421 PEG3Q9GZU2 1588 aa38.98■■■■□ 3.83
PDLIM4-206ENST00000474421 BAZ1BQ9UIG0 1483 aaKnown RBP38.96■■■■□ 3.83
PDLIM4-206ENST00000474421 MROH2BQ7Z745 1585 aa38.87■■■■□ 3.81
PDLIM4-206ENST00000474421 ERCC6Q03468 1493 aa38.78■■■■□ 3.8
PDLIM4-206ENST00000474421 CUX2O14529 1486 aa38.63■■■■□ 3.77
PDLIM4-206ENST00000474421 NESP48681 1621 aa38.6■■■■□ 3.77
PDLIM4-206ENST00000474421 LAMC3Q9Y6N6 1575 aa38.48■■■■□ 3.75
PDLIM4-206ENST00000474421 WIZO95785 1651 aa38.43■■■■□ 3.74
PDLIM4-206ENST00000474421 PDS5BQ9NTI5 1447 aa38.27■■■■□ 3.72
PDLIM4-206ENST00000474421 DNAJC5Q9H3Z4 198 aa38.23■■■■□ 3.71
PDLIM4-206ENST00000474421 CADPSQ9ULU8 1353 aa38.21■■■■□ 3.71
PDLIM4-206ENST00000474421 RSF1Q96T23 1441 aaPredicted RBP38.21■■■■□ 3.71
PDLIM4-206ENST00000474421 THOC2Q8NI27 1593 aaKnown RBP38.19■■■■□ 3.7
PDLIM4-206ENST00000474421 KIF21AQ7Z4S6 1674 aa38.16■■■■□ 3.7
PDLIM4-206ENST00000474421 TOP2AP11388 1531 aaKnown RBP38.02■■■■□ 3.68
PDLIM4-206ENST00000474421 MRC2Q9UBG0 1479 aa37.88■■■■□ 3.65
PDLIM4-206ENST00000474421 CFTRP13569 1480 aa37.84■■■■□ 3.65
PDLIM4-206ENST00000474421 CEP164Q9UPV0 1460 aa37.8■■■■□ 3.64
PDLIM4-206ENST00000474421 WDR62O43379 1518 aa37.77■■■■□ 3.64
PDLIM4-206ENST00000474421 FANCD2Q9BXW9 1451 aa37.77■■■■□ 3.64
PDLIM4-206ENST00000474421 CCDC88BA6NC98 1476 aa37.55■■■■□ 3.6
PDLIM4-206ENST00000474421 PRDM2Q13029 1718 aa37.53■■■■□ 3.6
PDLIM4-206ENST00000474421 URB2Q14146 1524 aaKnown RBP37.4■■■■□ 3.58
PDLIM4-206ENST00000474421 ABCC8Q09428 1581 aa37.11■■■■□ 3.53
PDLIM4-206ENST00000474421 TOPBP1Q92547 1522 aa37.07■■■■□ 3.53
PDLIM4-206ENST00000474421 IFT140Q96RY7 1462 aa37.04■■■■□ 3.52
PDLIM4-206ENST00000474421 DNMBPQ6XZF7 1577 aa36.99■■■■□ 3.51
PDLIM4-206ENST00000474421 OSCARQ8IYS5 282 aa36.91■■■■□ 3.5
PDLIM4-206ENST00000474421 ZNF608Q9ULD9 1512 aaPredicted RBP36.87■■■■□ 3.49
PDLIM4-206ENST00000474421 EIF4G3O43432 1585 aaKnown RBP36.72■■■■□ 3.47
PDLIM4-206ENST00000474421 TARBP1Q13395 1621 aaKnown RBP36.72■■■■□ 3.47
PDLIM4-206ENST00000474421 POLA1P09884 1462 aaPredicted RBP36.71■■■■□ 3.47
PDLIM4-206ENST00000474421 SUPT5HO00267 1087 aaKnown RBP36.71■■■■□ 3.47
PDLIM4-206ENST00000474421 TRIM41Q8WV44 630 aa36.64■■■■□ 3.46
PDLIM4-206ENST00000474421 AQRO60306 1485 aaKnown RBP eCLIP36.59■■■■□ 3.454e-6■■■■■ 31
PDLIM4-206ENST00000474421 SOGA1O94964 1423 aa36.57■■■■□ 3.44
PDLIM4-206ENST00000474421 RAD54L2Q9Y4B4 1467 aa36.53■■■■□ 3.44
PDLIM4-206ENST00000474421 FGD5Q6ZNL6 1462 aa36.52■■■■□ 3.44
PDLIM4-206ENST00000474421 CUX1P39880 1505 aa36.52■■■■□ 3.44
PDLIM4-206ENST00000474421 WDR97A6NE52 1622 aa36.47■■■■□ 3.43
PDLIM4-206ENST00000474421 TDRD9Q8NDG6 1382 aaKnown RBP36.41■■■■□ 3.42
PDLIM4-206ENST00000474421 CHD1O14646 1710 aa36.4■■■■□ 3.42
PDLIM4-206ENST00000474421 RIMBP3CA6NJZ7 1639 aa36.34■■■■□ 3.41
PDLIM4-206ENST00000474421 RIMBP3BA6NNM3 1639 aa36.34■■■■□ 3.41
PDLIM4-206ENST00000474421 RIMBP3Q9UFD9 1639 aa36.34■■■■□ 3.41
PDLIM4-206ENST00000474421 FBLN2P98095 1184 aa36.32■■■■□ 3.4
PDLIM4-206ENST00000474421 ARHGEF11O15085 1522 aa36.27■■■■□ 3.4
PDLIM4-206ENST00000474421 SNAPC4Q5SXM2 1469 aa36.24■■■■□ 3.39
PDLIM4-206ENST00000474421 GRIN2BQ13224 1484 aa36.24■■■■□ 3.39
PDLIM4-206ENST00000474421 MAGI1Q96QZ7 1491 aaPredicted RBP36.22■■■■□ 3.39
PDLIM4-206ENST00000474421 ABCA10Q8WWZ4 1543 aa36.15■■■■□ 3.38
PDLIM4-206ENST00000474421 GAPVD1Q14C86 1478 aa36.14■■■■□ 3.38
PDLIM4-206ENST00000474421 CHMP7Q8WUX9 453 aaPredicted RBP36.14■■■■□ 3.38
PDLIM4-206ENST00000474421 PBRM1Q86U86 1689 aa36.1■■■■□ 3.37
PDLIM4-206ENST00000474421 WRNQ14191 1432 aaPredicted RBP eCLIP36.09■■■■□ 3.37
PDLIM4-206ENST00000474421 SYNJ2O15056 1496 aa36.08■■■■□ 3.37
PDLIM4-206ENST00000474421 TOP2BQ02880 1626 aa36.06■■■■□ 3.36
PDLIM4-206ENST00000474421 ABCA5Q8WWZ7 1642 aa36.05■■■■□ 3.36
PDLIM4-206ENST00000474421 BIVM-ERCC5R4GMW8 1640 aa36.05■■■■□ 3.36
PDLIM4-206ENST00000474421 SYNJ1O43426 1573 aa36.05■■■■□ 3.36
PDLIM4-206ENST00000474421 CLASP1Q7Z460 1538 aa35.98■■■■□ 3.35
PDLIM4-206ENST00000474421 CYB5RLQ6IPT4 315 aa35.98■■■■□ 3.35
PDLIM4-206ENST00000474421 ARAP1Q96P48 1450 aa35.92■■■■□ 3.34
PDLIM4-206ENST00000474421 ADAMTS12P58397 1594 aa35.76■■■■□ 3.32
PDLIM4-206ENST00000474421 GRIN2AQ12879 1464 aa35.75■■■■□ 3.31
PDLIM4-206ENST00000474421 ERICH3Q5RHP9 1530 aa35.73■■■■□ 3.31
PDLIM4-206ENST00000474421 FHAD1B1AJZ9 1412 aa35.7■■■■□ 3.31
PDLIM4-206ENST00000474421 NUP160Q12769 1436 aa35.62■■■■□ 3.29
PDLIM4-206ENST00000474421 CEP170Q5SW79 1584 aa35.57■■■■□ 3.28
PDLIM4-206ENST00000474421 TRHP20396 242 aaPredicted RBP35.5■■■■□ 3.27
PDLIM4-206ENST00000474421 SHROOM2Q13796 1616 aa35.43■■■■□ 3.26
PDLIM4-206ENST00000474421 KIF27Q86VH2 1401 aa35.4■■■■□ 3.26
PDLIM4-206ENST00000474421 ERCC6L2Q5T890 1561 aa35.38■■■■□ 3.25
PDLIM4-206ENST00000474421 IGF1RP08069 1367 aa35.29■■■■□ 3.24
PDLIM4-206ENST00000474421 CUL7Q14999 1698 aa35.28■■■■□ 3.24
PDLIM4-206ENST00000474421 JPH4Q96JJ6 628 aa35.27■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms