RNA–Protein interactions for RNA: ENST00000357348.9

RTFDC1-202, Transcript of Protein RTF2 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTFDC1, Length 2,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-202ENST00000357348 NISCHQ9Y2I1 1504 aa28.29■■■□□ 2.12
RTFDC1-202ENST00000357348 CCDC180Q9P1Z9 1646 aa24.71■■□□□ 1.55
RTFDC1-202ENST00000357348 ABCC9O60706 1549 aa23.79■■□□□ 1.4
RTFDC1-202ENST00000357348 DCAF8L2P0C7V8 631 aa23.73■■□□□ 1.39
RTFDC1-202ENST00000357348 ZCCHC6Q5VYS8 1495 aaKnown RBP23.69■■□□□ 1.38
RTFDC1-202ENST00000357348 DCAF1Q9Y4B6 1507 aa23.25■■□□□ 1.31
RTFDC1-202ENST00000357348 SHROOM4Q9ULL8 1493 aa23.16■■□□□ 1.3
RTFDC1-202ENST00000357348 NACADO15069 1562 aa23.08■■□□□ 1.29
RTFDC1-202ENST00000357348 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
RTFDC1-202ENST00000357348 RB1CC1Q8TDY2 1594 aa22.99■■□□□ 1.27
RTFDC1-202ENST00000357348 SCRIBQ14160 1630 aa22.87■■□□□ 1.25
RTFDC1-202ENST00000357348 UNC13AQ9UPW8 1703 aa22.62■■□□□ 1.21
RTFDC1-202ENST00000357348 PABPN1Q86U42 306 aaKnown RBP eCLIP22.45■■□□□ 1.183e-6■■■□□ 15.3
RTFDC1-202ENST00000357348 BICRAQ9NZM4 1560 aa22.33■■□□□ 1.16
RTFDC1-202ENST00000357348 SUPT5HO00267 1087 aaKnown RBP22.15■■□□□ 1.14
RTFDC1-202ENST00000357348 CECR2Q9BXF3 1484 aa22.1■■□□□ 1.13
RTFDC1-202ENST00000357348 MROH2BQ7Z745 1585 aa21.91■■□□□ 1.1
RTFDC1-202ENST00000357348 RSF1Q96T23 1441 aaPredicted RBP21.88■■□□□ 1.09
RTFDC1-202ENST00000357348 BAZ1AQ9NRL2 1556 aaPredicted RBP21.84■■□□□ 1.09
RTFDC1-202ENST00000357348 SMARCA4P51532 1647 aa21.82■■□□□ 1.08
RTFDC1-202ENST00000357348 WIZO95785 1651 aa21.76■■□□□ 1.07
RTFDC1-202ENST00000357348 EIF4G1Q04637 1599 aaKnown RBP21.69■■□□□ 1.06
RTFDC1-202ENST00000357348 ATAD2BQ9ULI0 1458 aa21.51■■□□□ 1.03
RTFDC1-202ENST00000357348 CC2D2AQ9P2K1 1620 aa21.46■■□□□ 1.03
RTFDC1-202ENST00000357348 PEG3Q9GZU2 1588 aa21.46■■□□□ 1.03
RTFDC1-202ENST00000357348 SMARCA2P51531 1590 aa21.45■■□□□ 1.02
RTFDC1-202ENST00000357348 TOP2AP11388 1531 aaKnown RBP21.41■■□□□ 1.02
RTFDC1-202ENST00000357348 BAZ1BQ9UIG0 1483 aaKnown RBP21.4■■□□□ 1.02
RTFDC1-202ENST00000357348 NCAPD3P42695 1498 aa21.31■■□□□ 1
RTFDC1-202ENST00000357348 CCDC88BA6NC98 1476 aa21.25■□□□□ 0.99
RTFDC1-202ENST00000357348 HMGXB3Q12766 1538 aa21.25■□□□□ 0.99
RTFDC1-202ENST00000357348 DNAJC5BQ9UF47 199 aa21.24■□□□□ 0.99
RTFDC1-202ENST00000357348 CHIC1Q5VXU3 224 aa20.95■□□□□ 0.94
RTFDC1-202ENST00000357348 HRCP23327 699 aa20.87■□□□□ 0.93
RTFDC1-202ENST00000357348 NESP48681 1621 aa20.82■□□□□ 0.92
RTFDC1-202ENST00000357348 ABCC8Q09428 1581 aa20.81■□□□□ 0.92
RTFDC1-202ENST00000357348 CFTRP13569 1480 aa20.8■□□□□ 0.92
RTFDC1-202ENST00000357348 CADPSQ9ULU8 1353 aa20.8■□□□□ 0.92
RTFDC1-202ENST00000357348 TRIM41Q8WV44 630 aa20.75■□□□□ 0.91
RTFDC1-202ENST00000357348 PRDM2Q13029 1718 aa20.69■□□□□ 0.9
RTFDC1-202ENST00000357348 LAMC3Q9Y6N6 1575 aa20.64■□□□□ 0.9
RTFDC1-202ENST00000357348 WRNQ14191 1432 aaPredicted RBP eCLIP20.61■□□□□ 0.89
RTFDC1-202ENST00000357348 FANCD2Q9BXW9 1451 aa20.6■□□□□ 0.89
RTFDC1-202ENST00000357348 SYNJ1O43426 1573 aa20.57■□□□□ 0.88
RTFDC1-202ENST00000357348 KIF21AQ7Z4S6 1674 aa20.54■□□□□ 0.88
RTFDC1-202ENST00000357348 PDS5BQ9NTI5 1447 aa20.51■□□□□ 0.87
RTFDC1-202ENST00000357348 FAM9AQ8IZU1 332 aaPredicted RBP20.5■□□□□ 0.87
RTFDC1-202ENST00000357348 CEP164Q9UPV0 1460 aa20.48■□□□□ 0.87
RTFDC1-202ENST00000357348 CUX1P39880 1505 aa20.48■□□□□ 0.87
RTFDC1-202ENST00000357348 PCGF6Q9BYE7 350 aa20.45■□□□□ 0.86
RTFDC1-202ENST00000357348 TOP2BQ02880 1626 aa20.44■□□□□ 0.86
RTFDC1-202ENST00000357348 BIVM-ERCC5R4GMW8 1640 aa20.41■□□□□ 0.86
RTFDC1-202ENST00000357348 ERCC6Q03468 1493 aa20.4■□□□□ 0.86
RTFDC1-202ENST00000357348 URB2Q14146 1524 aaKnown RBP20.36■□□□□ 0.85
RTFDC1-202ENST00000357348 SOGA1O94964 1423 aa20.35■□□□□ 0.85
RTFDC1-202ENST00000357348 EHMT2Q96KQ7 1210 aa20.35■□□□□ 0.85
RTFDC1-202ENST00000357348 TOPBP1Q92547 1522 aa20.34■□□□□ 0.85
RTFDC1-202ENST00000357348 DNMBPQ6XZF7 1577 aa20.33■□□□□ 0.84
RTFDC1-202ENST00000357348 RUSC2Q8N2Y8 1516 aa20.31■□□□□ 0.84
RTFDC1-202ENST00000357348 FGD5Q6ZNL6 1462 aa20.31■□□□□ 0.84
RTFDC1-202ENST00000357348 MRC2Q9UBG0 1479 aa20.27■□□□□ 0.84
RTFDC1-202ENST00000357348 LOC105371045A0A1W2PR82 267 aa20.26■□□□□ 0.83
RTFDC1-202ENST00000357348 POLA1P09884 1462 aaPredicted RBP20.24■□□□□ 0.83
RTFDC1-202ENST00000357348 RAD54L2Q9Y4B4 1467 aa20.23■□□□□ 0.83
RTFDC1-202ENST00000357348 PPARGC1BQ86YN6 1023 aaKnown RBP20.22■□□□□ 0.83
RTFDC1-202ENST00000357348 THOC2Q8NI27 1593 aaKnown RBP20.18■□□□□ 0.82
RTFDC1-202ENST00000357348 WDR62O43379 1518 aa20.15■□□□□ 0.82
RTFDC1-202ENST00000357348 CUX2O14529 1486 aa20.15■□□□□ 0.82
RTFDC1-202ENST00000357348 CSRNP3Q8WYN3 585 aa20.12■□□□□ 0.81
RTFDC1-202ENST00000357348 TRIM26Q12899 539 aaPredicted RBP20.1■□□□□ 0.81
RTFDC1-202ENST00000357348 KIF27Q86VH2 1401 aa20.09■□□□□ 0.81
RTFDC1-202ENST00000357348 EEA1Q15075 1411 aa20.07■□□□□ 0.8
RTFDC1-202ENST00000357348 TDRD9Q8NDG6 1382 aaKnown RBP20.07■□□□□ 0.8
RTFDC1-202ENST00000357348 ABCA10Q8WWZ4 1543 aa20.05■□□□□ 0.8
RTFDC1-202ENST00000357348 TARBP1Q13395 1621 aaKnown RBP20.04■□□□□ 0.8
RTFDC1-202ENST00000357348 WDR97A6NE52 1622 aa20.03■□□□□ 0.8
RTFDC1-202ENST00000357348 ZNF608Q9ULD9 1512 aaPredicted RBP19.98■□□□□ 0.79
RTFDC1-202ENST00000357348 AQRO60306 1485 aaKnown RBP eCLIP19.98■□□□□ 0.794e-8■■□□□ 11.4
RTFDC1-202ENST00000357348 IFT140Q96RY7 1462 aa19.97■□□□□ 0.79
RTFDC1-202ENST00000357348 IGF1RP08069 1367 aa19.95■□□□□ 0.78
RTFDC1-202ENST00000357348 UBTFP17480 764 aaKnown RBP19.95■□□□□ 0.78
RTFDC1-202ENST00000357348 GAPVD1Q14C86 1478 aa19.94■□□□□ 0.78
RTFDC1-202ENST00000357348 ABCA5Q8WWZ7 1642 aa19.93■□□□□ 0.78
RTFDC1-202ENST00000357348 RAPGEF2Q9Y4G8 1499 aa19.92■□□□□ 0.78
RTFDC1-202ENST00000357348 ZEB1P37275 1124 aaPredicted RBP19.88■□□□□ 0.77
RTFDC1-202ENST00000357348 KIF21BO75037 1637 aa19.88■□□□□ 0.77
RTFDC1-202ENST00000357348 GOLGA3Q08378 1498 aa19.88■□□□□ 0.77
RTFDC1-202ENST00000357348 EIF4G3O43432 1585 aaKnown RBP19.86■□□□□ 0.77
RTFDC1-202ENST00000357348 PRXQ9BXM0 1461 aa19.86■□□□□ 0.77
RTFDC1-202ENST00000357348 CARMIL1Q5VZK9 1371 aa19.86■□□□□ 0.77
RTFDC1-202ENST00000357348 PBRM1Q86U86 1689 aa19.86■□□□□ 0.77
RTFDC1-202ENST00000357348 RANGAP1P46060 587 aaPredicted RBP19.86■□□□□ 0.77
RTFDC1-202ENST00000357348 ERICH3Q5RHP9 1530 aa19.8■□□□□ 0.76
RTFDC1-202ENST00000357348 GRIN2BQ13224 1484 aa19.79■□□□□ 0.76
RTFDC1-202ENST00000357348 CUL7Q14999 1698 aa19.77■□□□□ 0.76
RTFDC1-202ENST00000357348 TNIKQ9UKE5 1360 aa19.75■□□□□ 0.75
RTFDC1-202ENST00000357348 SNAPC4Q5SXM2 1469 aa19.74■□□□□ 0.75
RTFDC1-202ENST00000357348 FBLN2P98095 1184 aa19.72■□□□□ 0.75
RTFDC1-202ENST00000357348 ADAMTS12P58397 1594 aa19.7■□□□□ 0.74
RTFDC1-202ENST00000357348 CEP162Q5TB80 1403 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms