RNA–Protein interactions for RNA: ENST00000463615.1

PDLIM4-205, Transcript of PDZ and LIM domain 4, humanhuman

TSL 2

Gene PDLIM4, Length 582 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-205ENST00000463615 NISCHQ9Y2I1 1504 aa51.18■■■■■ 5.78
PDLIM4-205ENST00000463615 CCDC180Q9P1Z9 1646 aa45.79■■■■■ 4.92
PDLIM4-205ENST00000463615 ABCC9O60706 1549 aa45.31■■■■■ 4.84
PDLIM4-205ENST00000463615 RB1CC1Q8TDY2 1594 aa43.38■■■■■ 4.54
PDLIM4-205ENST00000463615 NACADO15069 1562 aa43.22■■■■■ 4.51
PDLIM4-205ENST00000463615 MYO15BQ96JP2 1530 aa42.86■■■■■ 4.45
PDLIM4-205ENST00000463615 DCAF8L2P0C7V8 631 aa42.81■■■■■ 4.44
PDLIM4-205ENST00000463615 ZCCHC6Q5VYS8 1495 aaKnown RBP42.5■■■■■ 4.39
PDLIM4-205ENST00000463615 DCAF1Q9Y4B6 1507 aa42.41■■■■■ 4.38
PDLIM4-205ENST00000463615 UNC13AQ9UPW8 1703 aa42.33■■■■■ 4.37
PDLIM4-205ENST00000463615 DNAJC5BQ9UF47 199 aa42.22■■■■■ 4.35
PDLIM4-205ENST00000463615 PABPN1Q86U42 306 aaKnown RBP eCLIP42.2■■■■■ 4.35
PDLIM4-205ENST00000463615 BICRAQ9NZM4 1560 aa42.11■■■■■ 4.33
PDLIM4-205ENST00000463615 SHROOM4Q9ULL8 1493 aa41.72■■■■■ 4.27
PDLIM4-205ENST00000463615 SCRIBQ14160 1630 aa41.6■■■■■ 4.25
PDLIM4-205ENST00000463615 EIF4G1Q04637 1599 aaKnown RBP41.03■■■■■ 4.16
PDLIM4-205ENST00000463615 CC2D2AQ9P2K1 1620 aa41■■■■■ 4.15
PDLIM4-205ENST00000463615 CECR2Q9BXF3 1484 aa40.83■■■■■ 4.13
PDLIM4-205ENST00000463615 NCAPD3P42695 1498 aa39.92■■■■□ 3.98
PDLIM4-205ENST00000463615 SMARCA4P51532 1647 aa39.81■■■■□ 3.96
PDLIM4-205ENST00000463615 ATAD2BQ9ULI0 1458 aa39.8■■■■□ 3.96
PDLIM4-205ENST00000463615 SMARCA2P51531 1590 aa39.72■■■■□ 3.95
PDLIM4-205ENST00000463615 BAZ1AQ9NRL2 1556 aaPredicted RBP39.7■■■■□ 3.95
PDLIM4-205ENST00000463615 HMGXB3Q12766 1538 aa39.64■■■■□ 3.94
PDLIM4-205ENST00000463615 PEG3Q9GZU2 1588 aa39.53■■■■□ 3.92
PDLIM4-205ENST00000463615 MROH2BQ7Z745 1585 aa39.38■■■■□ 3.9
PDLIM4-205ENST00000463615 BAZ1BQ9UIG0 1483 aaKnown RBP39.38■■■■□ 3.9
PDLIM4-205ENST00000463615 ERCC6Q03468 1493 aa39.1■■■■□ 3.85
PDLIM4-205ENST00000463615 CUX2O14529 1486 aa39.04■■■■□ 3.84
PDLIM4-205ENST00000463615 NESP48681 1621 aa39.03■■■■□ 3.84
PDLIM4-205ENST00000463615 LAMC3Q9Y6N6 1575 aa38.91■■■■□ 3.82
PDLIM4-205ENST00000463615 WIZO95785 1651 aa38.88■■■■□ 3.81
PDLIM4-205ENST00000463615 RSF1Q96T23 1441 aaPredicted RBP38.73■■■■□ 3.79
PDLIM4-205ENST00000463615 CADPSQ9ULU8 1353 aa38.68■■■■□ 3.78
PDLIM4-205ENST00000463615 PDS5BQ9NTI5 1447 aa38.67■■■■□ 3.78
PDLIM4-205ENST00000463615 THOC2Q8NI27 1593 aaKnown RBP38.64■■■■□ 3.78
PDLIM4-205ENST00000463615 DNAJC5Q9H3Z4 198 aa38.58■■■■□ 3.77
PDLIM4-205ENST00000463615 KIF21AQ7Z4S6 1674 aa38.54■■■■□ 3.76
PDLIM4-205ENST00000463615 TOP2AP11388 1531 aaKnown RBP38.5■■■■□ 3.75
PDLIM4-205ENST00000463615 CFTRP13569 1480 aa38.34■■■■□ 3.73
PDLIM4-205ENST00000463615 MRC2Q9UBG0 1479 aa38.3■■■■□ 3.72
PDLIM4-205ENST00000463615 WDR62O43379 1518 aa38.22■■■■□ 3.71
PDLIM4-205ENST00000463615 CEP164Q9UPV0 1460 aa38.2■■■■□ 3.71
PDLIM4-205ENST00000463615 FANCD2Q9BXW9 1451 aa38.19■■■■□ 3.7
PDLIM4-205ENST00000463615 CCDC88BA6NC98 1476 aa38.03■■■■□ 3.68
PDLIM4-205ENST00000463615 PRDM2Q13029 1718 aa37.92■■■■□ 3.66
PDLIM4-205ENST00000463615 URB2Q14146 1524 aaKnown RBP37.86■■■■□ 3.65
PDLIM4-205ENST00000463615 ABCC8Q09428 1581 aa37.54■■■■□ 3.6
PDLIM4-205ENST00000463615 TOPBP1Q92547 1522 aa37.52■■■■□ 3.6
PDLIM4-205ENST00000463615 IFT140Q96RY7 1462 aa37.46■■■■□ 3.59
PDLIM4-205ENST00000463615 DNMBPQ6XZF7 1577 aa37.42■■■■□ 3.58
PDLIM4-205ENST00000463615 ZNF608Q9ULD9 1512 aaPredicted RBP37.31■■■■□ 3.56
PDLIM4-205ENST00000463615 OSCARQ8IYS5 282 aa37.25■■■■□ 3.55
PDLIM4-205ENST00000463615 TARBP1Q13395 1621 aaKnown RBP37.18■■■■□ 3.54
PDLIM4-205ENST00000463615 POLA1P09884 1462 aaPredicted RBP37.16■■■■□ 3.54
PDLIM4-205ENST00000463615 EIF4G3O43432 1585 aaKnown RBP37.12■■■■□ 3.53
PDLIM4-205ENST00000463615 SUPT5HO00267 1087 aaKnown RBP37.1■■■■□ 3.53
PDLIM4-205ENST00000463615 AQRO60306 1485 aaKnown RBP eCLIP37■■■■□ 3.514e-6■■■■■ 31
PDLIM4-205ENST00000463615 CUX1P39880 1505 aa36.99■■■■□ 3.51
PDLIM4-205ENST00000463615 SOGA1O94964 1423 aa36.98■■■■□ 3.51
PDLIM4-205ENST00000463615 RAD54L2Q9Y4B4 1467 aa36.96■■■■□ 3.51
PDLIM4-205ENST00000463615 FGD5Q6ZNL6 1462 aa36.95■■■■□ 3.51
PDLIM4-205ENST00000463615 WDR97A6NE52 1622 aa36.91■■■■□ 3.5
PDLIM4-205ENST00000463615 TRIM41Q8WV44 630 aa36.85■■■■□ 3.49
PDLIM4-205ENST00000463615 TDRD9Q8NDG6 1382 aaKnown RBP36.82■■■■□ 3.49
PDLIM4-205ENST00000463615 CHD1O14646 1710 aa36.73■■■■□ 3.47
PDLIM4-205ENST00000463615 RIMBP3CA6NJZ7 1639 aa36.69■■■■□ 3.46
PDLIM4-205ENST00000463615 RIMBP3BA6NNM3 1639 aa36.69■■■■□ 3.46
PDLIM4-205ENST00000463615 RIMBP3Q9UFD9 1639 aa36.69■■■■□ 3.46
PDLIM4-205ENST00000463615 ARHGEF11O15085 1522 aa36.65■■■■□ 3.46
PDLIM4-205ENST00000463615 GRIN2BQ13224 1484 aa36.65■■■■□ 3.46
PDLIM4-205ENST00000463615 SNAPC4Q5SXM2 1469 aa36.64■■■■□ 3.46
PDLIM4-205ENST00000463615 MAGI1Q96QZ7 1491 aaPredicted RBP36.64■■■■□ 3.46
PDLIM4-205ENST00000463615 ABCA10Q8WWZ4 1543 aa36.62■■■■□ 3.45
PDLIM4-205ENST00000463615 FBLN2P98095 1184 aa36.59■■■■□ 3.45
PDLIM4-205ENST00000463615 GAPVD1Q14C86 1478 aa36.55■■■■□ 3.44
PDLIM4-205ENST00000463615 TOP2BQ02880 1626 aa36.52■■■■□ 3.44
PDLIM4-205ENST00000463615 BIVM-ERCC5R4GMW8 1640 aa36.52■■■■□ 3.44
PDLIM4-205ENST00000463615 WRNQ14191 1432 aaPredicted RBP eCLIP36.51■■■■□ 3.44
PDLIM4-205ENST00000463615 ABCA5Q8WWZ7 1642 aa36.51■■■■□ 3.43
PDLIM4-205ENST00000463615 SYNJ2O15056 1496 aa36.5■■■■□ 3.43
PDLIM4-205ENST00000463615 CHMP7Q8WUX9 453 aaPredicted RBP36.47■■■■□ 3.43
PDLIM4-205ENST00000463615 PBRM1Q86U86 1689 aa36.46■■■■□ 3.43
PDLIM4-205ENST00000463615 SYNJ1O43426 1573 aa36.43■■■■□ 3.42
PDLIM4-205ENST00000463615 CLASP1Q7Z460 1538 aa36.43■■■■□ 3.42
PDLIM4-205ENST00000463615 ARAP1Q96P48 1450 aa36.31■■■■□ 3.4
PDLIM4-205ENST00000463615 CYB5RLQ6IPT4 315 aa36.28■■■■□ 3.4
PDLIM4-205ENST00000463615 ADAMTS12P58397 1594 aa36.19■■■■□ 3.38
PDLIM4-205ENST00000463615 ERICH3Q5RHP9 1530 aa36.17■■■■□ 3.38
PDLIM4-205ENST00000463615 GRIN2AQ12879 1464 aa36.17■■■■□ 3.38
PDLIM4-205ENST00000463615 FHAD1B1AJZ9 1412 aa36.13■■■■□ 3.37
PDLIM4-205ENST00000463615 NUP160Q12769 1436 aa36.08■■■■□ 3.37
PDLIM4-205ENST00000463615 CEP170Q5SW79 1584 aa35.99■■■■□ 3.35
PDLIM4-205ENST00000463615 SHROOM2Q13796 1616 aa35.87■■■■□ 3.33
PDLIM4-205ENST00000463615 KIF27Q86VH2 1401 aa35.81■■■■□ 3.32
PDLIM4-205ENST00000463615 ERCC6L2Q5T890 1561 aa35.8■■■■□ 3.32
PDLIM4-205ENST00000463615 IGF1RP08069 1367 aa35.77■■■■□ 3.32
PDLIM4-205ENST00000463615 TRHP20396 242 aaPredicted RBP35.7■■■■□ 3.31
PDLIM4-205ENST00000463615 CUL7Q14999 1698 aa35.68■■■■□ 3.3
PDLIM4-205ENST00000463615 RUSC2Q8N2Y8 1516 aa35.67■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms