Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.055e-7■■■□□ 18.9
SUB1P53999 AGAP3-209ENST00000469901 582 ntTSL 314.66□□□□□ -0.063e-7■■■□□ 18.9
SUB1P53999 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.123e-7■■■□□ 18.9
SUB1P53999 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.18□□□□□ -0.142e-13■■■□□ 18.9
SUB1P53999 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.153e-7■■■□□ 18.9
SUB1P53999 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14□□□□□ -0.173e-7■■■□□ 18.9
SUB1P53999 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC13.94□□□□□ -0.183e-7■■■□□ 18.9
SUB1P53999 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC13.94□□□□□ -0.183e-7■■■□□ 18.9
SUB1P53999 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.25e-7■■■□□ 18.9
SUB1P53999 KIFC3-221ENST00000565397 810 ntTSL 313.7□□□□□ -0.225e-7■■■□□ 18.9
SUB1P53999 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.283e-7■■■□□ 18.9
SUB1P53999 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.333e-7■■■□□ 18.9
SUB1P53999 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC12.68□□□□□ -0.383e-7■■■□□ 18.9
SUB1P53999 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.413e-7■■■□□ 18.9
SUB1P53999 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.443e-7■■■□□ 18.9
SUB1P53999 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.443e-7■■■□□ 18.9
SUB1P53999 WDR46-234ENST00000468157 760 ntTSL 512.28□□□□□ -0.443e-7■■■□□ 18.9
SUB1P53999 AGAP3-221ENST00000490097 604 ntTSL 411.91□□□□□ -0.53e-7■■■□□ 18.9
SUB1P53999 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.543e-7■■■□□ 18.9
SUB1P53999 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC11.62□□□□□ -0.555e-7■■■□□ 18.9
SUB1P53999 INTS10-202ENST00000517546 864 ntTSL 211.33□□□□□ -0.63e-7■■■□□ 18.9
SUB1P53999 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC11.06□□□□□ -0.643e-7■■■□□ 18.9
SUB1P53999 MTO1-204ENST00000415228 2240 ntTSL 510.93□□□□□ -0.663e-7■■■□□ 18.9
SUB1P53999 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.683e-7■■■□□ 18.9
SUB1P53999 PDK1-201ENST00000282077 14193 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.683e-7■■■□□ 18.9
SUB1P53999 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC10.79□□□□□ -0.683e-7■■■□□ 18.9
SUB1P53999 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.73e-7■■■□□ 18.9
SUB1P53999 BAHCC1-206ENST00000584436 10801 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.73e-7■■■□□ 18.9
SUB1P53999 CDK5RAP2-201ENST00000349780 6228 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.753e-7■■■□□ 18.9
SUB1P53999 LARP4B-201ENST00000316157 5642 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.773e-7■■■□□ 18.9
SUB1P53999 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC10.1□□□□□ -0.793e-7■■■□□ 18.9
SUB1P53999 NCDN-202ENST00000373243 3683 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.813e-7■■■□□ 18.9
SUB1P53999 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC9.87□□□□□ -0.833e-7■■■□□ 18.9
SUB1P53999 WDR76-204ENST00000478130 1172 ntTSL 39.83□□□□□ -0.843e-7■■■□□ 18.9
SUB1P53999 TMCO1-202ENST00000392129 1946 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.842e-13■■■□□ 18.9
SUB1P53999 WDR46-236ENST00000477718 941 ntTSL 59.57□□□□□ -0.883e-7■■■□□ 18.9
SUB1P53999 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC9.44□□□□□ -0.92e-13■■■□□ 18.9
SUB1P53999 MTOR-206ENST00000490931 1111 ntTSL 59.44□□□□□ -0.93e-7■■■□□ 18.9
SUB1P53999 LARP4B-210ENST00000609318 4848 ntTSL 1 (best)9.42□□□□□ -0.93e-7■■■□□ 18.9
SUB1P53999 MTO1-208ENST00000462039 2416 ntTSL 29.42□□□□□ -0.93e-7■■■□□ 18.9
SUB1P53999 SLC30A9-201ENST00000264451 6218 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.913e-7■■■□□ 18.9
SUB1P53999 SYPL1-201ENST00000011473 2127 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.933e-7■■■□□ 18.9
SUB1P53999 TBC1D7-214ENST00000606214 2229 ntAPPRIS P1 TSL 59.16□□□□□ -0.943e-7■■■□□ 18.9
SUB1P53999 MTOR-201ENST00000361445 8677 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.963e-7■■■□□ 18.9
SUB1P53999 NCDN-204ENST00000423723 986 ntTSL 38.95□□□□□ -0.983e-7■■■□□ 18.9
SUB1P53999 CNIH1-206ENST00000557659 856 ntTSL 28.91□□□□□ -0.983e-7■■■□□ 18.9
SUB1P53999 CDK5RAP2-203ENST00000360822 5551 ntAPPRIS ALT2 TSL 5 BASIC8.88□□□□□ -0.993e-7■■■□□ 18.9
SUB1P53999 MAPKAPK3-204ENST00000451680 873 ntTSL 28.88□□□□□ -0.993e-7■■■□□ 18.9
SUB1P53999 TYK2-215ENST00000530560 558 ntTSL 38.86□□□□□ -0.993e-7■■■□□ 18.9
SUB1P53999 INTS10-216ENST00000523772 777 ntTSL 58.83□□□□□ -13e-7■■■□□ 18.9
SUB1P53999 INTS10-206ENST00000520670 623 ntTSL 58.83□□□□□ -13e-7■■■□□ 18.9
SUB1P53999 TMOD3-201ENST00000308580 8255 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -13e-7■■■□□ 18.9
SUB1P53999 TMCO1-201ENST00000367881 2224 ntTSL 1 (best) BASIC8.65□□□□□ -1.022e-13■■■□□ 18.9
SUB1P53999 WDR76-202ENST00000381246 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.033e-7■■■□□ 18.9
SUB1P53999 MTO1-203ENST00000370308 2621 ntTSL 1 (best)8.61□□□□□ -1.033e-7■■■□□ 18.9
SUB1P53999 SYPL1-202ENST00000455385 2151 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.083e-7■■■□□ 18.9
SUB1P53999 MS4A3-202ENST00000358152 1516 ntTSL 5 BASIC8.21□□□□□ -1.13e-7■■■□□ 18.9
SUB1P53999 CNIH1-202ENST00000395573 1233 ntTSL 1 (best) BASIC8.1□□□□□ -1.113e-7■■■□□ 18.9
SUB1P53999 MTO1-205ENST00000415954 2837 ntTSL 1 (best) BASIC8.08□□□□□ -1.123e-7■■■□□ 18.9
SUB1P53999 CSTF3-203ENST00000438862 1132 ntTSL 1 (best) BASIC8.07□□□□□ -1.123e-7■■■□□ 18.9
SUB1P53999 MTO1-201ENST00000370300 2961 ntTSL 1 (best) BASIC8.07□□□□□ -1.123e-7■■■□□ 18.9
SUB1P53999 CNIH1-203ENST00000553660 785 ntTSL 2 BASIC8.05□□□□□ -1.123e-7■■■□□ 18.9
SUB1P53999 BUB1-201ENST00000302759 3507 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.133e-7■■■□□ 18.9
SUB1P53999 LRRC40-201ENST00000370952 2884 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.183e-7■■■□□ 18.9
SUB1P53999 TMCO1-208ENST00000612311 4468 ntTSL 1 (best) BASIC7.54□□□□□ -1.22e-13■■■□□ 18.9
SUB1P53999 BUB1-212ENST00000535254 3576 ntTSL 2 BASIC7.15□□□□□ -1.263e-7■■■□□ 18.9
SUB1P53999 WDR76-201ENST00000263795 3978 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.293e-7■■■□□ 18.9
SUB1P53999 MTOR-204ENST00000473471 862 ntTSL 36.95□□□□□ -1.33e-7■■■□□ 18.9
SUB1P53999 INTS10-207ENST00000520827 631 ntTSL 36.39□□□□□ -1.393e-7■■■□□ 18.9
SUB1P53999 TMOD3-211ENST00000561438 1139 ntTSL 56.3□□□□□ -1.43e-7■■■□□ 18.9
SUB1P53999 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC5.7□□□□□ -1.53e-7■■■□□ 18.9
SUB1P53999 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.563e-7■■■□□ 18.9
SUB1P53999 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.26□□□□□ -1.573e-7■■■□□ 18.9
SUB1P53999 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.23□□□□□ -1.573e-7■■■□□ 18.9
SUB1P53999 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.593e-7■■■□□ 18.9
SUB1P53999 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.613e-7■■■□□ 18.9
SUB1P53999 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.653e-7■■■□□ 18.9
SUB1P53999 CSTF3-207ENST00000526480 479 ntTSL 34.64□□□□□ -1.673e-7■■■□□ 18.9
SUB1P53999 TMOD3-208ENST00000560725 544 ntTSL 44.1□□□□□ -1.753e-7■■■□□ 18.9
SUB1P53999 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC3.54□□□□□ -1.843e-7■■■□□ 18.9
SUB1P53999 TMOD3-207ENST00000560549 1474 ntTSL 1 (best)3.31□□□□□ -1.883e-7■■■□□ 18.9
SUB1P53999 MRPS18C-202ENST00000505525 442 ntTSL 32.29□□□□□ -2.043e-7■■■□□ 18.9
SUB1P53999 MS4A3-207ENST00000528952 923 ntTSL 21.98□□□□□ -2.093e-7■■■□□ 18.9
SUB1P53999 MTO1-216ENST00000521156 886 ntTSL 21.55□□□□□ -2.163e-7■■■□□ 18.9
SUB1P53999 MRPS18C-209ENST00000514581 301 ntTSL 21.34□□□□□ -2.193e-7■■■□□ 18.9
SUB1P53999 RPL24-202ENST00000464595 668 ntTSL 1 (best)6.12□□□□□ -1.434e-34■■■□□ 18.9
SUB1P53999 RPL24-201ENST00000394077 623 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.454e-34■■■□□ 18.9
SUB1P53999 RPL24-206ENST00000495401 478 ntTSL 2 BASIC5.09□□□□□ -1.594e-34■■■□□ 18.9
SUB1P53999 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.13□□□□□ -0.152e-10■■■□□ 18.8
SUB1P53999 CTTN-213ENST00000529736 952 ntTSL 311.99□□□□□ -0.492e-10■■■□□ 18.8
SUB1P53999 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.522e-10■■■□□ 18.8
SUB1P53999 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.682e-10■■■□□ 18.8
SUB1P53999 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.524e-8■■■□□ 18.7
SUB1P53999 ATP5A1-206ENST00000587902 571 ntTSL 27.55□□□□□ -1.21e-7■■■□□ 18.7
SUB1P53999 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.24■□□□□ 0.354e-6■■■□□ 18.7
SUB1P53999 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.154e-6■■■□□ 18.7
SUB1P53999 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.134e-6■■■□□ 18.7
SUB1P53999 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.12□□□□□ -0.154e-6■■■□□ 18.7
SUB1P53999 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC13.58□□□□□ -0.244e-6■■■□□ 18.7
SUB1P53999 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.474e-6■■■□□ 18.7
Retrieved 100 of 11,644 protein–RNA pairs in 204.8 ms