RNA–Protein interactions for RNA: ENST00000373253.7

NCDN-203, Transcript of neurochondrin, humanhuman

TSL 1 (best) BASIC

Gene NCDN, Length 3,677 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCDN-203ENST00000373253 NISCHQ9Y2I1 1504 aa26.13■■□□□ 1.77
NCDN-203ENST00000373253 DCAF8L2P0C7V8 631 aa24.08■■□□□ 1.45
NCDN-203ENST00000373253 SHROOM4Q9ULL8 1493 aa23.77■■□□□ 1.4
NCDN-203ENST00000373253 SUPT5HO00267 1087 aaKnown RBP23.41■■□□□ 1.34
NCDN-203ENST00000373253 EHMT2Q96KQ7 1210 aa22.27■■□□□ 1.16
NCDN-203ENST00000373253 FAM9AQ8IZU1 332 aaPredicted RBP21.91■■□□□ 1.1
NCDN-203ENST00000373253 ZCCHC6Q5VYS8 1495 aaKnown RBP21.84■■□□□ 1.09
NCDN-203ENST00000373253 ABCC9O60706 1549 aa21.82■■□□□ 1.08
NCDN-203ENST00000373253 CHIC1Q5VXU3 224 aa21.78■■□□□ 1.08
NCDN-203ENST00000373253 LOC105371045A0A1W2PR82 267 aa21.67■■□□□ 1.06
NCDN-203ENST00000373253 CCDC180Q9P1Z9 1646 aa21.61■■□□□ 1.05
NCDN-203ENST00000373253 PCGF6Q9BYE7 350 aa21.61■■□□□ 1.05
NCDN-203ENST00000373253 TRIM41Q8WV44 630 aa21.48■■□□□ 1.03
NCDN-203ENST00000373253 TTBK1Q5TCY1 1321 aaPredicted RBP21.38■■□□□ 1.01
NCDN-203ENST00000373253 PABPN1Q86U42 306 aaKnown RBP eCLIP21.34■■□□□ 1.01
NCDN-203ENST00000373253 SCRIBQ14160 1630 aa21.33■■□□□ 1
NCDN-203ENST00000373253 PPARGC1BQ86YN6 1023 aaKnown RBP21.32■■□□□ 1
NCDN-203ENST00000373253 MYO15BQ96JP2 1530 aa21.19■□□□□ 0.98
NCDN-203ENST00000373253 RANGAP1P46060 587 aaPredicted RBP21.12■□□□□ 0.97
NCDN-203ENST00000373253 RSF1Q96T23 1441 aaPredicted RBP20.86■□□□□ 0.93
NCDN-203ENST00000373253 CECR2Q9BXF3 1484 aa20.83■□□□□ 0.92
NCDN-203ENST00000373253 UBTFP17480 764 aaKnown RBP20.8■□□□□ 0.92
NCDN-203ENST00000373253 DCAF1Q9Y4B6 1507 aa20.75■□□□□ 0.91
NCDN-203ENST00000373253 HRCP23327 699 aa20.74■□□□□ 0.91
NCDN-203ENST00000373253 TRIM26Q12899 539 aaPredicted RBP20.66■□□□□ 0.9
NCDN-203ENST00000373253 RB1CC1Q8TDY2 1594 aa20.54■□□□□ 0.88
NCDN-203ENST00000373253 MROH2BQ7Z745 1585 aa20.52■□□□□ 0.87
NCDN-203ENST00000373253 NACADO15069 1562 aa20.49■□□□□ 0.87
NCDN-203ENST00000373253 CCER1Q8TC90 406 aaPredicted RBP20.45■□□□□ 0.86
NCDN-203ENST00000373253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.42■□□□□ 0.86
NCDN-203ENST00000373253 APLP2Q06481 763 aa20.39■□□□□ 0.86
NCDN-203ENST00000373253 WIZO95785 1651 aa20.33■□□□□ 0.85
NCDN-203ENST00000373253 ATP1B4Q9UN42 357 aaPredicted RBP20.3■□□□□ 0.84
NCDN-203ENST00000373253 HNRNPUL2Q1KMD3 747 aaKnown RBP20.27■□□□□ 0.84
NCDN-203ENST00000373253 CSRNP3Q8WYN3 585 aa20.21■□□□□ 0.83
NCDN-203ENST00000373253 ITGAEP38570 1179 aa20.15■□□□□ 0.82
NCDN-203ENST00000373253 ABCC8Q09428 1581 aa20.15■□□□□ 0.82
NCDN-203ENST00000373253 BAZ1AQ9NRL2 1556 aaPredicted RBP20.11■□□□□ 0.81
NCDN-203ENST00000373253 CCDC88BA6NC98 1476 aa20.07■□□□□ 0.8
NCDN-203ENST00000373253 SOGA1O94964 1423 aa20.06■□□□□ 0.8
NCDN-203ENST00000373253 ZEB1P37275 1124 aaPredicted RBP20.04■□□□□ 0.8
NCDN-203ENST00000373253 P3H3Q8IVL6 736 aa19.94■□□□□ 0.78
NCDN-203ENST00000373253 RUSC2Q8N2Y8 1516 aa19.89■□□□□ 0.78
NCDN-203ENST00000373253 BAZ1BQ9UIG0 1483 aaKnown RBP19.87■□□□□ 0.77
NCDN-203ENST00000373253 WRNQ14191 1432 aaPredicted RBP eCLIP19.86■□□□□ 0.77
NCDN-203ENST00000373253 YTHDC1Q96MU7 727 aaKnown RBP19.86■□□□□ 0.77
NCDN-203ENST00000373253 SMARCA4P51532 1647 aa19.84■□□□□ 0.77
NCDN-203ENST00000373253 CEP162Q5TB80 1403 aa19.81■□□□□ 0.76
NCDN-203ENST00000373253 TOP2AP11388 1531 aaKnown RBP19.76■□□□□ 0.75
NCDN-203ENST00000373253 ARID3CA6NKF2 412 aa19.71■□□□□ 0.75
NCDN-203ENST00000373253 SMARCA2P51531 1590 aa19.67■□□□□ 0.74
NCDN-203ENST00000373253 ATAD2BQ9ULI0 1458 aa19.67■□□□□ 0.74
NCDN-203ENST00000373253 PELP1Q8IZL8 1130 aaKnown RBP19.64■□□□□ 0.73
NCDN-203ENST00000373253 CLIP1P30622 1438 aa19.62■□□□□ 0.73
NCDN-203ENST00000373253 FAM50AQ14320 339 aaKnown RBP19.62■□□□□ 0.73
NCDN-203ENST00000373253 DIEXFQ68CQ4 756 aaKnown RBP19.61■□□□□ 0.73
NCDN-203ENST00000373253 TNIKQ9UKE5 1360 aa19.58■□□□□ 0.72
NCDN-203ENST00000373253 BICRAQ9NZM4 1560 aa19.56■□□□□ 0.72
NCDN-203ENST00000373253 GOLGA3Q08378 1498 aa19.56■□□□□ 0.72
NCDN-203ENST00000373253 UNC13AQ9UPW8 1703 aa19.54■□□□□ 0.72
NCDN-203ENST00000373253 NEUROD1Q13562 356 aa19.47■□□□□ 0.71
NCDN-203ENST00000373253 FBLN2P98095 1184 aa19.45■□□□□ 0.7
NCDN-203ENST00000373253 RAPGEF2Q9Y4G8 1499 aa19.45■□□□□ 0.7
NCDN-203ENST00000373253 KANK4Q5T7N3 995 aaPredicted RBP19.44■□□□□ 0.7
NCDN-203ENST00000373253 EEA1Q15075 1411 aa19.42■□□□□ 0.7
NCDN-203ENST00000373253 CEP164Q9UPV0 1460 aa19.42■□□□□ 0.7
NCDN-203ENST00000373253 DNAJC5BQ9UF47 199 aa19.4■□□□□ 0.7
NCDN-203ENST00000373253 SYNJ1O43426 1573 aa19.34■□□□□ 0.69
NCDN-203ENST00000373253 CENPBP07199 599 aaPredicted RBP19.33■□□□□ 0.69
NCDN-203ENST00000373253 KIF27Q86VH2 1401 aa19.32■□□□□ 0.68
NCDN-203ENST00000373253 CUX2O14529 1486 aa19.32■□□□□ 0.68
NCDN-203ENST00000373253 ZNF316A6NFI3 1004 aaPredicted RBP19.31■□□□□ 0.68
NCDN-203ENST00000373253 CNGB1Q14028 1251 aaPredicted RBP19.3■□□□□ 0.68
NCDN-203ENST00000373253 EIF4G1Q04637 1599 aaKnown RBP19.27■□□□□ 0.68
NCDN-203ENST00000373253 SCAF1Q9H7N4 1312 aaKnown RBP19.26■□□□□ 0.67
NCDN-203ENST00000373253 HIRIP3Q9BW71 556 aaPredicted RBP19.24■□□□□ 0.67
NCDN-203ENST00000373253 TDRD9Q8NDG6 1382 aaKnown RBP19.21■□□□□ 0.67
NCDN-203ENST00000373253 VPS8Q8N3P4 1428 aa19.2■□□□□ 0.66
NCDN-203ENST00000373253 CHIC2Q9UKJ5 165 aa19.2■□□□□ 0.66
NCDN-203ENST00000373253 CARMIL1Q5VZK9 1371 aa19.19■□□□□ 0.66
NCDN-203ENST00000373253 CADPSQ9ULU8 1353 aa19.19■□□□□ 0.66
NCDN-203ENST00000373253 GTF3C3Q9Y5Q9 886 aa19.16■□□□□ 0.66
NCDN-203ENST00000373253 TRIM52Q96A61 297 aa19.15■□□□□ 0.66
NCDN-203ENST00000373253 MIER1Q8N108 512 aa19.15■□□□□ 0.66
NCDN-203ENST00000373253 NCAPD3P42695 1498 aa19.13■□□□□ 0.65
NCDN-203ENST00000373253 NESP48681 1621 aa19.11■□□□□ 0.65
NCDN-203ENST00000373253 POLR3GLQ9BT43 218 aa19.09■□□□□ 0.65
NCDN-203ENST00000373253 SIN3AQ96ST3 1273 aa19.08■□□□□ 0.64
NCDN-203ENST00000373253 RAD54L2Q9Y4B4 1467 aa19.08■□□□□ 0.64
NCDN-203ENST00000373253 ZNF777Q9ULD5 760 aaPredicted RBP19.06■□□□□ 0.64
NCDN-203ENST00000373253 ACIN1Q9UKV3 1341 aaKnown RBP19.03■□□□□ 0.64
NCDN-203ENST00000373253 IGF1RP08069 1367 aa19.03■□□□□ 0.64
NCDN-203ENST00000373253 CUX1P39880 1505 aa19.03■□□□□ 0.64
NCDN-203ENST00000373253 RRP7BPQ9NSQ0 103 aa19.02■□□□□ 0.63
NCDN-203ENST00000373253 FANCD2Q9BXW9 1451 aa19■□□□□ 0.63
NCDN-203ENST00000373253 FGD5Q6ZNL6 1462 aa18.99■□□□□ 0.63
NCDN-203ENST00000373253 MTUS2Q5JR59 1369 aa18.98■□□□□ 0.63
NCDN-203ENST00000373253 FHOD3Q2V2M9 1422 aa18.98■□□□□ 0.63
NCDN-203ENST00000373253 CFTRP13569 1480 aa18.97■□□□□ 0.63
NCDN-203ENST00000373253 DDX10Q13206 875 aaKnown RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms