RNA–Protein interactions for RNA: ENST00000370952.3

LRRC40-201, Transcript of leucine rich repeat containing 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRRC40, Length 2,884 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40-201ENST00000370952 NISCHQ9Y2I1 1504 aa18.48■□□□□ 0.55
LRRC40-201ENST00000370952 SHROOM4Q9ULL8 1493 aa16.45■□□□□ 0.22
LRRC40-201ENST00000370952 SUPT5HO00267 1087 aaKnown RBP16.34■□□□□ 0.21
LRRC40-201ENST00000370952 HRCP23327 699 aa16.33■□□□□ 0.2
LRRC40-201ENST00000370952 MYO15BQ96JP2 1530 aa16.11■□□□□ 0.17
LRRC40-201ENST00000370952 PCGF6Q9BYE7 350 aa16.11■□□□□ 0.17
LRRC40-201ENST00000370952 PPARGC1BQ86YN6 1023 aaKnown RBP16.1■□□□□ 0.17
LRRC40-201ENST00000370952 CHIC1Q5VXU3 224 aa15.99■□□□□ 0.15
LRRC40-201ENST00000370952 ZCCHC6Q5VYS8 1495 aaKnown RBP15.71■□□□□ 0.1
LRRC40-201ENST00000370952 LOC105371045A0A1W2PR82 267 aa15.67■□□□□ 0.1
LRRC40-201ENST00000370952 DCAF1Q9Y4B6 1507 aa15.65■□□□□ 0.1
LRRC40-201ENST00000370952 DCAF8L2P0C7V8 631 aa15.54■□□□□ 0.08
LRRC40-201ENST00000370952 TRIM26Q12899 539 aaPredicted RBP15.54■□□□□ 0.08
LRRC40-201ENST00000370952 PELP1Q8IZL8 1130 aaKnown RBP15.53■□□□□ 0.08
LRRC40-201ENST00000370952 CCDC180Q9P1Z9 1646 aa15.47■□□□□ 0.07
LRRC40-201ENST00000370952 SCAF1Q9H7N4 1312 aaKnown RBP15.44■□□□□ 0.06
LRRC40-201ENST00000370952 ZEB1P37275 1124 aaPredicted RBP15.33■□□□□ 0.04
LRRC40-201ENST00000370952 FAM9AQ8IZU1 332 aaPredicted RBP15.14■□□□□ 0.01
LRRC40-201ENST00000370952 EHMT2Q96KQ7 1210 aa15.14■□□□□ 0.01
LRRC40-201ENST00000370952 TRIM41Q8WV44 630 aa15.07■□□□□ 0
LRRC40-201ENST00000370952 NEUROD1Q13562 356 aa15.06■□□□□ 0
LRRC40-201ENST00000370952 ACIN1Q9UKV3 1341 aaKnown RBP15.06■□□□□ 0
LRRC40-201ENST00000370952 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.97□□□□□ -0.01
LRRC40-201ENST00000370952 GTF3C3Q9Y5Q9 886 aa14.97□□□□□ -0.01
LRRC40-201ENST00000370952 ABCC9O60706 1549 aa14.93□□□□□ -0.02
LRRC40-201ENST00000370952 CCER1Q8TC90 406 aaPredicted RBP14.91□□□□□ -0.02
LRRC40-201ENST00000370952 RSF1Q96T23 1441 aaPredicted RBP14.87□□□□□ -0.03
LRRC40-201ENST00000370952 DIEXFQ68CQ4 756 aaKnown RBP14.87□□□□□ -0.03
LRRC40-201ENST00000370952 RB1CC1Q8TDY2 1594 aa14.86□□□□□ -0.03
LRRC40-201ENST00000370952 CENPBP07199 599 aaPredicted RBP14.86□□□□□ -0.03
LRRC40-201ENST00000370952 MYT1Q01538 1121 aa14.85□□□□□ -0.03
LRRC40-201ENST00000370952 TTBK1Q5TCY1 1321 aaPredicted RBP14.75□□□□□ -0.05
LRRC40-201ENST00000370952 SCRIBQ14160 1630 aa14.73□□□□□ -0.05
LRRC40-201ENST00000370952 YTHDC1Q96MU7 727 aaKnown RBP14.7□□□□□ -0.06
LRRC40-201ENST00000370952 ZNF316A6NFI3 1004 aaPredicted RBP14.58□□□□□ -0.08
LRRC40-201ENST00000370952 CECR2Q9BXF3 1484 aa14.52□□□□□ -0.08
LRRC40-201ENST00000370952 MIER1Q8N108 512 aa14.52□□□□□ -0.09
LRRC40-201ENST00000370952 MROH2BQ7Z745 1585 aa14.48□□□□□ -0.09
LRRC40-201ENST00000370952 WIZO95785 1651 aa14.46□□□□□ -0.09
LRRC40-201ENST00000370952 CEP162Q5TB80 1403 aa14.43□□□□□ -0.1
LRRC40-201ENST00000370952 WRNQ14191 1432 aaPredicted RBP eCLIP14.43□□□□□ -0.1
LRRC40-201ENST00000370952 ABCC8Q09428 1581 aa14.37□□□□□ -0.11
LRRC40-201ENST00000370952 HNRNPUL2Q1KMD3 747 aaKnown RBP14.36□□□□□ -0.11
LRRC40-201ENST00000370952 EIF4G1Q04637 1599 aaKnown RBP14.35□□□□□ -0.11
LRRC40-201ENST00000370952 CCDC88BA6NC98 1476 aa14.35□□□□□ -0.11
LRRC40-201ENST00000370952 UBTFP17480 764 aaKnown RBP14.32□□□□□ -0.12
LRRC40-201ENST00000370952 SOGA1O94964 1423 aa14.31□□□□□ -0.12
LRRC40-201ENST00000370952 TNIKQ9UKE5 1360 aa14.29□□□□□ -0.12
LRRC40-201ENST00000370952 BAZ1AQ9NRL2 1556 aaPredicted RBP14.28□□□□□ -0.12
LRRC40-201ENST00000370952 RUSC2Q8N2Y8 1516 aa14.25□□□□□ -0.13
LRRC40-201ENST00000370952 SUPT16HQ9Y5B9 1047 aaKnown RBP14.25□□□□□ -0.13
LRRC40-201ENST00000370952 CSRNP3Q8WYN3 585 aa14.23□□□□□ -0.13
LRRC40-201ENST00000370952 NACADO15069 1562 aa14.18□□□□□ -0.14
LRRC40-201ENST00000370952 TSHZ2Q9NRE2 1034 aa14.16□□□□□ -0.14
LRRC40-201ENST00000370952 GOLGA3Q08378 1498 aa14.14□□□□□ -0.15
LRRC40-201ENST00000370952 ANP32EQ9BTT0 268 aa14.12□□□□□ -0.15
LRRC40-201ENST00000370952 TOP2AP11388 1531 aaKnown RBP14.1□□□□□ -0.15
LRRC40-201ENST00000370952 EEA1Q15075 1411 aa14.1□□□□□ -0.15
LRRC40-201ENST00000370952 SMARCA2P51531 1590 aa14.1□□□□□ -0.15
LRRC40-201ENST00000370952 RANGAP1P46060 587 aaPredicted RBP14.09□□□□□ -0.15
LRRC40-201ENST00000370952 CLSPNQ9HAW4 1339 aa14.09□□□□□ -0.15
LRRC40-201ENST00000370952 BCL11AQ9H165 835 aa14.06□□□□□ -0.16
LRRC40-201ENST00000370952 APLP2Q06481 763 aa14.06□□□□□ -0.16
LRRC40-201ENST00000370952 CLIP1P30622 1438 aa14.05□□□□□ -0.16
LRRC40-201ENST00000370952 BCANQ96GW7 911 aa14.05□□□□□ -0.16
LRRC40-201ENST00000370952 VPS8Q8N3P4 1428 aa14.01□□□□□ -0.17
LRRC40-201ENST00000370952 KCNH8Q96L42 1107 aa14.01□□□□□ -0.17
LRRC40-201ENST00000370952 DHX57Q6P158 1386 aaKnown RBP14□□□□□ -0.17
LRRC40-201ENST00000370952 CEP164Q9UPV0 1460 aa13.99□□□□□ -0.17
LRRC40-201ENST00000370952 SMARCA4P51532 1647 aa13.99□□□□□ -0.17
LRRC40-201ENST00000370952 KIF21BO75037 1637 aa13.94□□□□□ -0.18
LRRC40-201ENST00000370952 FKBP8Q14318 412 aa13.92□□□□□ -0.18
LRRC40-201ENST00000370952 RAPGEF2Q9Y4G8 1499 aa13.91□□□□□ -0.18
LRRC40-201ENST00000370952 SYNJ1O43426 1573 aa13.9□□□□□ -0.18
LRRC40-201ENST00000370952 KANK4Q5T7N3 995 aaPredicted RBP13.85□□□□□ -0.19
LRRC40-201ENST00000370952 ITGAEP38570 1179 aa13.84□□□□□ -0.19
LRRC40-201ENST00000370952 RBM19Q9Y4C8 960 aaKnown RBP13.84□□□□□ -0.19
LRRC40-201ENST00000370952 BAZ1BQ9UIG0 1483 aaKnown RBP13.83□□□□□ -0.19
LRRC40-201ENST00000370952 DDX10Q13206 875 aaKnown RBP13.8□□□□□ -0.2
LRRC40-201ENST00000370952 NEFLP07196 543 aa13.77□□□□□ -0.21
LRRC40-201ENST00000370952 TRIM52Q96A61 297 aa13.76□□□□□ -0.21
LRRC40-201ENST00000370952 UNC13AQ9UPW8 1703 aa13.75□□□□□ -0.21
LRRC40-201ENST00000370952 ARAP1Q96P48 1450 aa13.75□□□□□ -0.21
LRRC40-201ENST00000370952 RRBP1Q9P2E9 1410 aaKnown RBP13.73□□□□□ -0.21
LRRC40-201ENST00000370952 MSH5O43196 834 aa13.73□□□□□ -0.21
LRRC40-201ENST00000370952 HIRIP3Q9BW71 556 aaPredicted RBP13.73□□□□□ -0.21
LRRC40-201ENST00000370952 CCNB3Q8WWL7 1395 aa13.7□□□□□ -0.22
LRRC40-201ENST00000370952 RAB3GAP2Q9H2M9 1393 aa13.69□□□□□ -0.22
LRRC40-201ENST00000370952 PABPN1Q86U42 306 aaKnown RBP eCLIP13.69□□□□□ -0.22
LRRC40-201ENST00000370952 SIN3AQ96ST3 1273 aa13.69□□□□□ -0.22
LRRC40-201ENST00000370952 MAPKBP1O60336 1514 aa13.69□□□□□ -0.22
LRRC40-201ENST00000370952 WDR97A6NE52 1622 aa13.68□□□□□ -0.22
LRRC40-201ENST00000370952 CUX2O14529 1486 aa13.68□□□□□ -0.22
LRRC40-201ENST00000370952 PPP1R15AO75807 674 aaPredicted RBP13.65□□□□□ -0.22
LRRC40-201ENST00000370952 IRX6P78412 446 aaPredicted RBP13.62□□□□□ -0.23
LRRC40-201ENST00000370952 ANP32CO43423 234 aa13.61□□□□□ -0.23
LRRC40-201ENST00000370952 PRXQ9BXM0 1461 aa13.61□□□□□ -0.23
LRRC40-201ENST00000370952 ERICH3Q5RHP9 1530 aa13.6□□□□□ -0.23
LRRC40-201ENST00000370952 TOP2BQ02880 1626 aa13.6□□□□□ -0.23
LRRC40-201ENST00000370952 ERICH6Q7L0X2 663 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms