RNA–Protein interactions for RNA: ENST00000431742.2

CSTF3-202, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 2 BASIC

Gene CSTF3, Length 715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-202ENST00000431742 NISCHQ9Y2I1 1504 aa34.75■■■■□ 3.15
CSTF3-202ENST00000431742 CCDC180Q9P1Z9 1646 aa30.89■■■□□ 2.54
CSTF3-202ENST00000431742 ABCC9O60706 1549 aa29.76■■■□□ 2.36
CSTF3-202ENST00000431742 ZCCHC6Q5VYS8 1495 aaKnown RBP29.04■■■□□ 2.24
CSTF3-202ENST00000431742 NACADO15069 1562 aa28.88■■■□□ 2.21
CSTF3-202ENST00000431742 MYO15BQ96JP2 1530 aa28.84■■■□□ 2.21
CSTF3-202ENST00000431742 RB1CC1Q8TDY2 1594 aa28.84■■■□□ 2.21
CSTF3-202ENST00000431742 DCAF1Q9Y4B6 1507 aa28.82■■■□□ 2.2
CSTF3-202ENST00000431742 DCAF8L2P0C7V8 631 aa28.65■■■□□ 2.18
CSTF3-202ENST00000431742 UNC13AQ9UPW8 1703 aa28.34■■■□□ 2.13
CSTF3-202ENST00000431742 SCRIBQ14160 1630 aa28.1■■■□□ 2.09
CSTF3-202ENST00000431742 BICRAQ9NZM4 1560 aa28.01■■■□□ 2.07
CSTF3-202ENST00000431742 PABPN1Q86U42 306 aaKnown RBP eCLIP27.76■■■□□ 2.03
CSTF3-202ENST00000431742 SHROOM4Q9ULL8 1493 aa27.73■■■□□ 2.03
CSTF3-202ENST00000431742 AEBP2Q6ZN18 517 aaPredicted RBP27.31■■□□□ 1.96
CSTF3-202ENST00000431742 EIF4G1Q04637 1599 aaKnown RBP27.2■■□□□ 1.94
CSTF3-202ENST00000431742 CC2D2AQ9P2K1 1620 aa27.02■■□□□ 1.92
CSTF3-202ENST00000431742 DNAJC5BQ9UF47 199 aa27.01■■□□□ 1.91
CSTF3-202ENST00000431742 CECR2Q9BXF3 1484 aa27■■□□□ 1.91
CSTF3-202ENST00000431742 SMARCA4P51532 1647 aa26.95■■□□□ 1.91
CSTF3-202ENST00000431742 BAZ1AQ9NRL2 1556 aaPredicted RBP26.92■■□□□ 1.9
CSTF3-202ENST00000431742 MROH2BQ7Z745 1585 aa26.78■■□□□ 1.88
CSTF3-202ENST00000431742 PEG3Q9GZU2 1588 aa26.71■■□□□ 1.87
CSTF3-202ENST00000431742 SMARCA2P51531 1590 aa26.67■■□□□ 1.86
CSTF3-202ENST00000431742 ATAD2BQ9ULI0 1458 aa26.66■■□□□ 1.86
CSTF3-202ENST00000431742 NCAPD3P42695 1498 aa26.61■■□□□ 1.85
CSTF3-202ENST00000431742 HMGXB3Q12766 1538 aa26.57■■□□□ 1.84
CSTF3-202ENST00000431742 RSF1Q96T23 1441 aaPredicted RBP26.54■■□□□ 1.84
CSTF3-202ENST00000431742 WIZO95785 1651 aa26.54■■□□□ 1.84
CSTF3-202ENST00000431742 BAZ1BQ9UIG0 1483 aaKnown RBP26.45■■□□□ 1.82
CSTF3-202ENST00000431742 TOP2AP11388 1531 aaKnown RBP26.27■■□□□ 1.8
CSTF3-202ENST00000431742 CHIC1Q5VXU3 224 aa26.26■■□□□ 1.79
CSTF3-202ENST00000431742 SUPT5HO00267 1087 aaKnown RBP25.92■■□□□ 1.74
CSTF3-202ENST00000431742 LAMC3Q9Y6N6 1575 aa25.9■■□□□ 1.74
CSTF3-202ENST00000431742 CCDC88BA6NC98 1476 aa25.9■■□□□ 1.74
CSTF3-202ENST00000431742 NESP48681 1621 aa25.87■■□□□ 1.73
CSTF3-202ENST00000431742 CADPSQ9ULU8 1353 aa25.8■■□□□ 1.72
CSTF3-202ENST00000431742 PRDM2Q13029 1718 aa25.78■■□□□ 1.72
CSTF3-202ENST00000431742 CFTRP13569 1480 aa25.76■■□□□ 1.71
CSTF3-202ENST00000431742 KIF21AQ7Z4S6 1674 aa25.69■■□□□ 1.7
CSTF3-202ENST00000431742 PDS5BQ9NTI5 1447 aa25.63■■□□□ 1.69
CSTF3-202ENST00000431742 ERCC6Q03468 1493 aa25.6■■□□□ 1.69
CSTF3-202ENST00000431742 FANCD2Q9BXW9 1451 aa25.53■■□□□ 1.68
CSTF3-202ENST00000431742 THOC2Q8NI27 1593 aaKnown RBP25.52■■□□□ 1.68
CSTF3-202ENST00000431742 CEP164Q9UPV0 1460 aa25.48■■□□□ 1.67
CSTF3-202ENST00000431742 MRC2Q9UBG0 1479 aa25.4■■□□□ 1.66
CSTF3-202ENST00000431742 WDR62O43379 1518 aa25.36■■□□□ 1.65
CSTF3-202ENST00000431742 CUX2O14529 1486 aa25.3■■□□□ 1.64
CSTF3-202ENST00000431742 URB2Q14146 1524 aaKnown RBP25.29■■□□□ 1.64
CSTF3-202ENST00000431742 DNMBPQ6XZF7 1577 aa25.22■■□□□ 1.63
CSTF3-202ENST00000431742 TOPBP1Q92547 1522 aa25.18■■□□□ 1.62
CSTF3-202ENST00000431742 ABCC8Q09428 1581 aa25.18■■□□□ 1.62
CSTF3-202ENST00000431742 CUX1P39880 1505 aa25.12■■□□□ 1.61
CSTF3-202ENST00000431742 BIVM-ERCC5R4GMW8 1640 aa25.04■■□□□ 1.6
CSTF3-202ENST00000431742 SYNJ1O43426 1573 aa25.01■■□□□ 1.59
CSTF3-202ENST00000431742 TOP2BQ02880 1626 aa25.01■■□□□ 1.59
CSTF3-202ENST00000431742 WRNQ14191 1432 aaPredicted RBP eCLIP25■■□□□ 1.59
CSTF3-202ENST00000431742 POLA1P09884 1462 aaPredicted RBP24.99■■□□□ 1.59
CSTF3-202ENST00000431742 FGD5Q6ZNL6 1462 aa24.96■■□□□ 1.59
CSTF3-202ENST00000431742 TARBP1Q13395 1621 aaKnown RBP24.96■■□□□ 1.59
CSTF3-202ENST00000431742 IFT140Q96RY7 1462 aa24.93■■□□□ 1.58
CSTF3-202ENST00000431742 WDR97A6NE52 1622 aa24.89■■□□□ 1.57
CSTF3-202ENST00000431742 RAD54L2Q9Y4B4 1467 aa24.83■■□□□ 1.56
CSTF3-202ENST00000431742 SOGA1O94964 1423 aa24.81■■□□□ 1.56
CSTF3-202ENST00000431742 ZNF608Q9ULD9 1512 aaPredicted RBP24.8■■□□□ 1.56
CSTF3-202ENST00000431742 EIF4G3O43432 1585 aaKnown RBP24.8■■□□□ 1.56
CSTF3-202ENST00000431742 ABCA10Q8WWZ4 1543 aa24.75■■□□□ 1.55
CSTF3-202ENST00000431742 ABCA5Q8WWZ7 1642 aa24.7■■□□□ 1.54
CSTF3-202ENST00000431742 AQRO60306 1485 aaKnown RBP eCLIP24.64■■□□□ 1.54
CSTF3-202ENST00000431742 PBRM1Q86U86 1689 aa24.64■■□□□ 1.53
CSTF3-202ENST00000431742 TDRD9Q8NDG6 1382 aaKnown RBP24.62■■□□□ 1.53
CSTF3-202ENST00000431742 GAPVD1Q14C86 1478 aa24.58■■□□□ 1.52
CSTF3-202ENST00000431742 GRIN2BQ13224 1484 aa24.54■■□□□ 1.52
CSTF3-202ENST00000431742 TRIM41Q8WV44 630 aa24.49■■□□□ 1.51
CSTF3-202ENST00000431742 ERICH3Q5RHP9 1530 aa24.47■■□□□ 1.51
CSTF3-202ENST00000431742 SNAPC4Q5SXM2 1469 aa24.47■■□□□ 1.51
CSTF3-202ENST00000431742 MAGI1Q96QZ7 1491 aaPredicted RBP24.47■■□□□ 1.51
CSTF3-202ENST00000431742 CHD1O14646 1710 aa24.47■■□□□ 1.51
CSTF3-202ENST00000431742 KIF27Q86VH2 1401 aa24.44■■□□□ 1.5
CSTF3-202ENST00000431742 ADAMTS12P58397 1594 aa24.42■■□□□ 1.5
CSTF3-202ENST00000431742 SYNJ2O15056 1496 aa24.36■■□□□ 1.49
CSTF3-202ENST00000431742 CUL7Q14999 1698 aa24.35■■□□□ 1.49
CSTF3-202ENST00000431742 RUSC2Q8N2Y8 1516 aa24.33■■□□□ 1.49
CSTF3-202ENST00000431742 FHAD1B1AJZ9 1412 aa24.29■■□□□ 1.48
CSTF3-202ENST00000431742 IGF1RP08069 1367 aa24.29■■□□□ 1.48
CSTF3-202ENST00000431742 GRIN2AQ12879 1464 aa24.25■■□□□ 1.47
CSTF3-202ENST00000431742 CHMP7Q8WUX9 453 aaPredicted RBP24.19■■□□□ 1.46
CSTF3-202ENST00000431742 EEA1Q15075 1411 aa24.18■■□□□ 1.46
CSTF3-202ENST00000431742 FBLN2P98095 1184 aa24.18■■□□□ 1.46
CSTF3-202ENST00000431742 OSCARQ8IYS5 282 aa24.18■■□□□ 1.46
CSTF3-202ENST00000431742 CLASP1Q7Z460 1538 aa24.16■■□□□ 1.46
CSTF3-202ENST00000431742 CEP170Q5SW79 1584 aa24.16■■□□□ 1.46
CSTF3-202ENST00000431742 CARMIL1Q5VZK9 1371 aa24.14■■□□□ 1.45
CSTF3-202ENST00000431742 NUP160Q12769 1436 aa24.13■■□□□ 1.45
CSTF3-202ENST00000431742 PRXQ9BXM0 1461 aa24.09■■□□□ 1.45
CSTF3-202ENST00000431742 DNAJC5Q9H3Z4 198 aa24.09■■□□□ 1.45
CSTF3-202ENST00000431742 RAPGEF2Q9Y4G8 1499 aa24.07■■□□□ 1.44
CSTF3-202ENST00000431742 CSRNP3Q8WYN3 585 aa24.02■■□□□ 1.44
CSTF3-202ENST00000431742 KIF21BO75037 1637 aa24■■□□□ 1.43
CSTF3-202ENST00000431742 SHROOM2Q13796 1616 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms