RNA–Protein interactions for RNA: ENST00000356090.8

NCDN-201, Transcript of neurochondrin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NCDN, Length 3,433 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCDN-201ENST00000356090 NISCHQ9Y2I1 1504 aa25.84■■□□□ 1.73
NCDN-201ENST00000356090 SHROOM4Q9ULL8 1493 aa23.25■■□□□ 1.31
NCDN-201ENST00000356090 SUPT5HO00267 1087 aaKnown RBP23.05■■□□□ 1.28
NCDN-201ENST00000356090 DCAF8L2P0C7V8 631 aa22.63■■□□□ 1.21
NCDN-201ENST00000356090 PCGF6Q9BYE7 350 aa22.18■■□□□ 1.14
NCDN-201ENST00000356090 CHIC1Q5VXU3 224 aa22.09■■□□□ 1.13
NCDN-201ENST00000356090 HRCP23327 699 aa22.03■■□□□ 1.12
NCDN-201ENST00000356090 MYO15BQ96JP2 1530 aa21.92■■□□□ 1.1
NCDN-201ENST00000356090 PPARGC1BQ86YN6 1023 aaKnown RBP21.89■■□□□ 1.09
NCDN-201ENST00000356090 ZCCHC6Q5VYS8 1495 aaKnown RBP21.82■■□□□ 1.08
NCDN-201ENST00000356090 LOC105371045A0A1W2PR82 267 aa21.78■■□□□ 1.08
NCDN-201ENST00000356090 EHMT2Q96KQ7 1210 aa21.58■■□□□ 1.04
NCDN-201ENST00000356090 FAM9AQ8IZU1 332 aaPredicted RBP21.44■■□□□ 1.02
NCDN-201ENST00000356090 CCDC180Q9P1Z9 1646 aa21.4■■□□□ 1.02
NCDN-201ENST00000356090 TRIM26Q12899 539 aaPredicted RBP21.32■■□□□ 1
NCDN-201ENST00000356090 TRIM41Q8WV44 630 aa21.22■□□□□ 0.99
NCDN-201ENST00000356090 DCAF1Q9Y4B6 1507 aa21.19■□□□□ 0.98
NCDN-201ENST00000356090 ZEB1P37275 1124 aaPredicted RBP20.94■□□□□ 0.94
NCDN-201ENST00000356090 TTBK1Q5TCY1 1321 aaPredicted RBP20.91■□□□□ 0.94
NCDN-201ENST00000356090 SCRIBQ14160 1630 aa20.78■□□□□ 0.92
NCDN-201ENST00000356090 RSF1Q96T23 1441 aaPredicted RBP20.75■□□□□ 0.91
NCDN-201ENST00000356090 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.73■□□□□ 0.91
NCDN-201ENST00000356090 CCER1Q8TC90 406 aaPredicted RBP20.72■□□□□ 0.91
NCDN-201ENST00000356090 SCAF1Q9H7N4 1312 aaKnown RBP20.63■□□□□ 0.89
NCDN-201ENST00000356090 ABCC9O60706 1549 aa20.62■□□□□ 0.89
NCDN-201ENST00000356090 RB1CC1Q8TDY2 1594 aa20.58■□□□□ 0.89
NCDN-201ENST00000356090 PELP1Q8IZL8 1130 aaKnown RBP20.47■□□□□ 0.87
NCDN-201ENST00000356090 CECR2Q9BXF3 1484 aa20.41■□□□□ 0.86
NCDN-201ENST00000356090 DIEXFQ68CQ4 756 aaKnown RBP20.35■□□□□ 0.85
NCDN-201ENST00000356090 UBTFP17480 764 aaKnown RBP20.33■□□□□ 0.85
NCDN-201ENST00000356090 NEUROD1Q13562 356 aa20.33■□□□□ 0.84
NCDN-201ENST00000356090 YTHDC1Q96MU7 727 aaKnown RBP20.31■□□□□ 0.84
NCDN-201ENST00000356090 ACIN1Q9UKV3 1341 aaKnown RBP20.29■□□□□ 0.84
NCDN-201ENST00000356090 CENPBP07199 599 aaPredicted RBP20.29■□□□□ 0.84
NCDN-201ENST00000356090 GTF3C3Q9Y5Q9 886 aa20.27■□□□□ 0.83
NCDN-201ENST00000356090 MROH2BQ7Z745 1585 aa20.26■□□□□ 0.83
NCDN-201ENST00000356090 RANGAP1P46060 587 aaPredicted RBP20.24■□□□□ 0.83
NCDN-201ENST00000356090 HNRNPUL2Q1KMD3 747 aaKnown RBP20.15■□□□□ 0.82
NCDN-201ENST00000356090 WIZO95785 1651 aa20.14■□□□□ 0.82
NCDN-201ENST00000356090 ABCC8Q09428 1581 aa20.02■□□□□ 0.8
NCDN-201ENST00000356090 CEP162Q5TB80 1403 aa20■□□□□ 0.79
NCDN-201ENST00000356090 CSRNP3Q8WYN3 585 aa20■□□□□ 0.79
NCDN-201ENST00000356090 ZNF316A6NFI3 1004 aaPredicted RBP19.98■□□□□ 0.79
NCDN-201ENST00000356090 APLP2Q06481 763 aa19.98■□□□□ 0.79
NCDN-201ENST00000356090 CCDC88BA6NC98 1476 aa19.98■□□□□ 0.79
NCDN-201ENST00000356090 SOGA1O94964 1423 aa19.96■□□□□ 0.79
NCDN-201ENST00000356090 NACADO15069 1562 aa19.94■□□□□ 0.78
NCDN-201ENST00000356090 PABPN1Q86U42 306 aaKnown RBP eCLIP19.93■□□□□ 0.78
NCDN-201ENST00000356090 MIER1Q8N108 512 aa19.85■□□□□ 0.77
NCDN-201ENST00000356090 RUSC2Q8N2Y8 1516 aa19.83■□□□□ 0.76
NCDN-201ENST00000356090 BAZ1AQ9NRL2 1556 aaPredicted RBP19.82■□□□□ 0.76
NCDN-201ENST00000356090 TNIKQ9UKE5 1360 aa19.8■□□□□ 0.76
NCDN-201ENST00000356090 WRNQ14191 1432 aaPredicted RBP eCLIP19.72■□□□□ 0.75
NCDN-201ENST00000356090 MYT1Q01538 1121 aa19.7■□□□□ 0.74
NCDN-201ENST00000356090 TOP2AP11388 1531 aaKnown RBP19.66■□□□□ 0.74
NCDN-201ENST00000356090 ITGAEP38570 1179 aa19.66■□□□□ 0.74
NCDN-201ENST00000356090 GOLGA3Q08378 1498 aa19.65■□□□□ 0.74
NCDN-201ENST00000356090 CLIP1P30622 1438 aa19.61■□□□□ 0.73
NCDN-201ENST00000356090 SMARCA2P51531 1590 aa19.6■□□□□ 0.73
NCDN-201ENST00000356090 EEA1Q15075 1411 aa19.59■□□□□ 0.73
NCDN-201ENST00000356090 EIF4G1Q04637 1599 aaKnown RBP19.56■□□□□ 0.72
NCDN-201ENST00000356090 SMARCA4P51532 1647 aa19.56■□□□□ 0.72
NCDN-201ENST00000356090 CEP164Q9UPV0 1460 aa19.47■□□□□ 0.71
NCDN-201ENST00000356090 VPS8Q8N3P4 1428 aa19.41■□□□□ 0.7
NCDN-201ENST00000356090 RAPGEF2Q9Y4G8 1499 aa19.39■□□□□ 0.69
NCDN-201ENST00000356090 ATP1B4Q9UN42 357 aaPredicted RBP19.38■□□□□ 0.69
NCDN-201ENST00000356090 KANK4Q5T7N3 995 aaPredicted RBP19.35■□□□□ 0.69
NCDN-201ENST00000356090 BCANQ96GW7 911 aa19.35■□□□□ 0.69
NCDN-201ENST00000356090 SYNJ1O43426 1573 aa19.3■□□□□ 0.68
NCDN-201ENST00000356090 SUPT16HQ9Y5B9 1047 aaKnown RBP19.26■□□□□ 0.67
NCDN-201ENST00000356090 BAZ1BQ9UIG0 1483 aaKnown RBP19.23■□□□□ 0.67
NCDN-201ENST00000356090 DHX57Q6P158 1386 aaKnown RBP19.23■□□□□ 0.67
NCDN-201ENST00000356090 FAM50AQ14320 339 aaKnown RBP19.21■□□□□ 0.67
NCDN-201ENST00000356090 KCNH8Q96L42 1107 aa19.2■□□□□ 0.66
NCDN-201ENST00000356090 HIRIP3Q9BW71 556 aaPredicted RBP19.19■□□□□ 0.66
NCDN-201ENST00000356090 KIF21BO75037 1637 aa19.18■□□□□ 0.66
NCDN-201ENST00000356090 P3H3Q8IVL6 736 aa19.17■□□□□ 0.66
NCDN-201ENST00000356090 DDX10Q13206 875 aaKnown RBP19.16■□□□□ 0.66
NCDN-201ENST00000356090 UNC13AQ9UPW8 1703 aa19.15■□□□□ 0.66
NCDN-201ENST00000356090 ATAD2BQ9ULI0 1458 aa19.12■□□□□ 0.65
NCDN-201ENST00000356090 CLSPNQ9HAW4 1339 aa19.1■□□□□ 0.65
NCDN-201ENST00000356090 FKBP8Q14318 412 aa19.08■□□□□ 0.65
NCDN-201ENST00000356090 SIN3AQ96ST3 1273 aa19.08■□□□□ 0.65
NCDN-201ENST00000356090 CCNB3Q8WWL7 1395 aa19.06■□□□□ 0.64
NCDN-201ENST00000356090 NEFLP07196 543 aa19.05■□□□□ 0.64
NCDN-201ENST00000356090 TRIM52Q96A61 297 aa19.04■□□□□ 0.64
NCDN-201ENST00000356090 TSHZ2Q9NRE2 1034 aa19.02■□□□□ 0.64
NCDN-201ENST00000356090 BICRAQ9NZM4 1560 aa19.01■□□□□ 0.63
NCDN-201ENST00000356090 ARAP1Q96P48 1450 aa19.01■□□□□ 0.63
NCDN-201ENST00000356090 RAB3GAP2Q9H2M9 1393 aa18.98■□□□□ 0.63
NCDN-201ENST00000356090 KIF27Q86VH2 1401 aa18.98■□□□□ 0.63
NCDN-201ENST00000356090 ANP32CO43423 234 aa18.91■□□□□ 0.62
NCDN-201ENST00000356090 PRXQ9BXM0 1461 aa18.9■□□□□ 0.62
NCDN-201ENST00000356090 TOP2BQ02880 1626 aa18.88■□□□□ 0.61
NCDN-201ENST00000356090 RRBP1Q9P2E9 1410 aaKnown RBP18.86■□□□□ 0.61
NCDN-201ENST00000356090 PEG3Q9GZU2 1588 aa18.85■□□□□ 0.61
NCDN-201ENST00000356090 ANP32EQ9BTT0 268 aa18.83■□□□□ 0.61
NCDN-201ENST00000356090 ARHGAP35Q9NRY4 1499 aa18.83■□□□□ 0.6
NCDN-201ENST00000356090 CUX2O14529 1486 aa18.82■□□□□ 0.6
NCDN-201ENST00000356090 IRX6P78412 446 aaPredicted RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms