RNA–Protein interactions for RNA: ENST00000526480.1

CSTF3-207, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3

Gene CSTF3, Length 479 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-207ENST00000526480 AEBP2Q6ZN18 517 aaPredicted RBP22.35■■□□□ 1.17
CSTF3-207ENST00000526480 CHIC1Q5VXU3 224 aa21.31■■□□□ 1
CSTF3-207ENST00000526480 SENP3Q9H4L4 574 aaPredicted RBP19.23■□□□□ 0.67
CSTF3-207ENST00000526480 PHF23Q9BUL5 403 aaPredicted RBP18.86■□□□□ 0.61
CSTF3-207ENST00000526480 POTEDQ86YR6 584 aa18.75■□□□□ 0.59
CSTF3-207ENST00000526480 FOXD1Q16676 465 aa18.07■□□□□ 0.48
CSTF3-207ENST00000526480 MSH5O43196 834 aa17.32■□□□□ 0.36
CSTF3-207ENST00000526480 PLPPR3Q6T4P5 718 aa17.3■□□□□ 0.36
CSTF3-207ENST00000526480 PIAS4Q8N2W9 510 aaPredicted RBP16.65■□□□□ 0.26
CSTF3-207ENST00000526480 ADRA2BP18089 450 aa16.57■□□□□ 0.24
CSTF3-207ENST00000526480 PPP6R1Q9UPN7 881 aa16.56■□□□□ 0.24
CSTF3-207ENST00000526480 NISCHQ9Y2I1 1504 aa16.23■□□□□ 0.19
CSTF3-207ENST00000526480 ABCC9O60706 1549 aa15.86■□□□□ 0.13
CSTF3-207ENST00000526480 DNAJC5BQ9UF47 199 aa15.69■□□□□ 0.1
CSTF3-207ENST00000526480 CACNB1Q02641 598 aaPredicted RBP15.58■□□□□ 0.08
CSTF3-207ENST00000526480 PPP4R3CPQ6ZMV5 832 aa15.23■□□□□ 0.03
CSTF3-207ENST00000526480 SCAF1Q9H7N4 1312 aaKnown RBP15.22■□□□□ 0.03
CSTF3-207ENST00000526480 KCNA4P22459 653 aa15.09■□□□□ 0.01
CSTF3-207ENST00000526480 DMRT2Q9Y5R5 561 aa15.07■□□□□ 0
CSTF3-207ENST00000526480 MAPK8IP2Q13387 824 aaPredicted RBP15.06■□□□□ 0
CSTF3-207ENST00000526480 CCDC180Q9P1Z9 1646 aa15.06■□□□□ 0
CSTF3-207ENST00000526480 DNAJC5Q9H3Z4 198 aa14.94□□□□□ -0.02
CSTF3-207ENST00000526480 NCBP3Q53F19 620 aaKnown RBP14.85□□□□□ -0.03
CSTF3-207ENST00000526480 CNKSR2Q8WXI2 1034 aa14.83□□□□□ -0.04
CSTF3-207ENST00000526480 RB1CC1Q8TDY2 1594 aa14.67□□□□□ -0.06
CSTF3-207ENST00000526480 RNF39Q9H2S5 420 aa14.66□□□□□ -0.06
CSTF3-207ENST00000526480 UNC13AQ9UPW8 1703 aa14.63□□□□□ -0.07
CSTF3-207ENST00000526480 DCAF8L1A6NGE4 600 aa14.63□□□□□ -0.07
CSTF3-207ENST00000526480 NPM3O75607 178 aaKnown RBP14.56□□□□□ -0.08
CSTF3-207ENST00000526480 PABPN1Q86U42 306 aaKnown RBP eCLIP14.55□□□□□ -0.08
CSTF3-207ENST00000526480 RNF216Q9NWF9 866 aaPredicted RBP14.54□□□□□ -0.08
CSTF3-207ENST00000526480 POTEHQ6S545 545 aa14.49□□□□□ -0.09
CSTF3-207ENST00000526480 HOXD11P31277 338 aaPredicted RBP14.48□□□□□ -0.09
CSTF3-207ENST00000526480 EHMT2Q96KQ7 1210 aa14.43□□□□□ -0.1
CSTF3-207ENST00000526480 SLC4A1APQ9BWU0 796 aaKnown RBP14.43□□□□□ -0.1
CSTF3-207ENST00000526480 BICRAQ9NZM4 1560 aa14.42□□□□□ -0.1
CSTF3-207ENST00000526480 C1QBPQ07021 282 aaKnown RBP14.4□□□□□ -0.1
CSTF3-207ENST00000526480 CC2D2AQ9P2K1 1620 aa14.33□□□□□ -0.11
CSTF3-207ENST00000526480 CECR2Q9BXF3 1484 aa14.33□□□□□ -0.12
CSTF3-207ENST00000526480 NACADO15069 1562 aa14.33□□□□□ -0.12
CSTF3-207ENST00000526480 CSRNP3Q8WYN3 585 aa14.1□□□□□ -0.15
CSTF3-207ENST00000526480 EIF4G1Q04637 1599 aaKnown RBP14.05□□□□□ -0.16
CSTF3-207ENST00000526480 CUX2O14529 1486 aa13.97□□□□□ -0.17
CSTF3-207ENST00000526480 DCAF8L2P0C7V8 631 aa13.93□□□□□ -0.18
CSTF3-207ENST00000526480 TRIM41Q8WV44 630 aa13.93□□□□□ -0.18
CSTF3-207ENST00000526480 SHROOM4Q9ULL8 1493 aa13.93□□□□□ -0.18
CSTF3-207ENST00000526480 ZBTB22O15209 634 aa13.91□□□□□ -0.18
CSTF3-207ENST00000526480 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.9□□□□□ -0.188e-9■■■□□ 14.6
CSTF3-207ENST00000526480 MYO15BQ96JP2 1530 aa13.8□□□□□ -0.2
CSTF3-207ENST00000526480 FOXD4L1Q9NU39 408 aa13.79□□□□□ -0.2
CSTF3-207ENST00000526480 SLC4A2P04920 1241 aa13.75□□□□□ -0.21
CSTF3-207ENST00000526480 SCRIBQ14160 1630 aa13.68□□□□□ -0.22
CSTF3-207ENST00000526480 ERCC6Q03468 1493 aa13.67□□□□□ -0.22
CSTF3-207ENST00000526480 U3KPZ7 1027 aaPredicted RBP13.57□□□□□ -0.24
CSTF3-207ENST00000526480 THOC2Q8NI27 1593 aaKnown RBP13.53□□□□□ -0.24
CSTF3-207ENST00000526480 MYCNP04198 464 aaPredicted RBP13.48□□□□□ -0.25
CSTF3-207ENST00000526480 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.45□□□□□ -0.26
CSTF3-207ENST00000526480 HNRNPUL2Q1KMD3 747 aaKnown RBP13.45□□□□□ -0.26
CSTF3-207ENST00000526480 NESP48681 1621 aa13.42□□□□□ -0.26
CSTF3-207ENST00000526480 DSG3P32926 999 aa13.39□□□□□ -0.27
CSTF3-207ENST00000526480 SAMD1Q6SPF0 538 aaPredicted RBP13.38□□□□□ -0.27
CSTF3-207ENST00000526480 APLP2Q06481 763 aa13.35□□□□□ -0.27
CSTF3-207ENST00000526480 KIF21AQ7Z4S6 1674 aa13.34□□□□□ -0.27
CSTF3-207ENST00000526480 BAZ1AQ9NRL2 1556 aaPredicted RBP13.32□□□□□ -0.28
CSTF3-207ENST00000526480 DCAF1Q9Y4B6 1507 aa13.31□□□□□ -0.28
CSTF3-207ENST00000526480 SMARCA2P51531 1590 aa13.31□□□□□ -0.28
CSTF3-207ENST00000526480 ZCCHC6Q5VYS8 1495 aaKnown RBP13.29□□□□□ -0.28
CSTF3-207ENST00000526480 ATXN8OSP0DMR3 200 aa13.28□□□□□ -0.28
CSTF3-207ENST00000526480 CAPN15O75808 1086 aa13.27□□□□□ -0.29
CSTF3-207ENST00000526480 RIMBP3CA6NJZ7 1639 aa13.26□□□□□ -0.29
CSTF3-207ENST00000526480 RIMBP3BA6NNM3 1639 aa13.26□□□□□ -0.29
CSTF3-207ENST00000526480 RIMBP3Q9UFD9 1639 aa13.26□□□□□ -0.29
CSTF3-207ENST00000526480 SPINK5Q9NQ38 1064 aaPredicted RBP13.25□□□□□ -0.29
CSTF3-207ENST00000526480 NCAPD3P42695 1498 aa13.2□□□□□ -0.3
CSTF3-207ENST00000526480 TRHP20396 242 aaPredicted RBP13.18□□□□□ -0.3
CSTF3-207ENST00000526480 ZNF219Q9P2Y4 722 aaPredicted RBP13.15□□□□□ -0.3
CSTF3-207ENST00000526480 LAMC3Q9Y6N6 1575 aa13.11□□□□□ -0.31
CSTF3-207ENST00000526480 ATF5Q9Y2D1 282 aaPredicted RBP13.1□□□□□ -0.31
CSTF3-207ENST00000526480 HMGXB3Q12766 1538 aa13.09□□□□□ -0.31
CSTF3-207ENST00000526480 ATAD2BQ9ULI0 1458 aa13.08□□□□□ -0.32
CSTF3-207ENST00000526480 SP7Q8TDD2 431 aaPredicted RBP13.07□□□□□ -0.32
CSTF3-207ENST00000526480 OSCARQ8IYS5 282 aa13.06□□□□□ -0.32
CSTF3-207ENST00000526480 ARHGEF11O15085 1522 aa13.04□□□□□ -0.32
CSTF3-207ENST00000526480 WDR62O43379 1518 aa13.04□□□□□ -0.32
CSTF3-207ENST00000526480 MRC2Q9UBG0 1479 aa12.98□□□□□ -0.33
CSTF3-207ENST00000526480 ABCB7O75027 752 aa12.98□□□□□ -0.33
CSTF3-207ENST00000526480 CHRDL2Q6WN34 429 aa12.97□□□□□ -0.33
CSTF3-207ENST00000526480 ILDR1Q86SU0 546 aaPredicted RBP12.97□□□□□ -0.33
CSTF3-207ENST00000526480 PDS5BQ9NTI5 1447 aa12.95□□□□□ -0.34
CSTF3-207ENST00000526480 SMARCA4P51532 1647 aa12.93□□□□□ -0.34
CSTF3-207ENST00000526480 POLA2Q14181 598 aa12.92□□□□□ -0.34
CSTF3-207ENST00000526480 BAZ1BQ9UIG0 1483 aaKnown RBP12.89□□□□□ -0.35
CSTF3-207ENST00000526480 ARAP1Q96P48 1450 aa12.88□□□□□ -0.35
CSTF3-207ENST00000526480 CYB5RLQ6IPT4 315 aa12.87□□□□□ -0.35
CSTF3-207ENST00000526480 RBM42Q9BTD8 480 aaKnown RBP12.8□□□□□ -0.36
CSTF3-207ENST00000526480 PEG3Q9GZU2 1588 aa12.77□□□□□ -0.36
CSTF3-207ENST00000526480 CHD1O14646 1710 aa12.77□□□□□ -0.36
CSTF3-207ENST00000526480 CEP164Q9UPV0 1460 aa12.75□□□□□ -0.37
CSTF3-207ENST00000526480 CADPSQ9ULU8 1353 aa12.72□□□□□ -0.37
CSTF3-207ENST00000526480 FKBP8Q14318 412 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms