RNA–Protein interactions for RNA: ENST00000011473.6

SYPL1-201, Transcript of synaptophysin like 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYPL1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYPL1-201ENST00000011473 NISCHQ9Y2I1 1504 aa28.83■■■□□ 2.21
SYPL1-201ENST00000011473 CCDC180Q9P1Z9 1646 aa25.44■■□□□ 1.66
SYPL1-201ENST00000011473 ABCC9O60706 1549 aa24.89■■□□□ 1.58
SYPL1-201ENST00000011473 DCAF8L2P0C7V8 631 aa24.18■■□□□ 1.46
SYPL1-201ENST00000011473 ZCCHC6Q5VYS8 1495 aaKnown RBP24.07■■□□□ 1.44
SYPL1-201ENST00000011473 NACADO15069 1562 aa23.91■■□□□ 1.42
SYPL1-201ENST00000011473 RB1CC1Q8TDY2 1594 aa23.9■■□□□ 1.42
SYPL1-201ENST00000011473 MYO15BQ96JP2 1530 aa23.78■■□□□ 1.4
SYPL1-201ENST00000011473 DCAF1Q9Y4B6 1507 aa23.78■■□□□ 1.4
SYPL1-201ENST00000011473 SCRIBQ14160 1630 aa23.39■■□□□ 1.33
SYPL1-201ENST00000011473 UNC13AQ9UPW8 1703 aa23.36■■□□□ 1.33
SYPL1-201ENST00000011473 PABPN1Q86U42 306 aaKnown RBP eCLIP23.35■■□□□ 1.33
SYPL1-201ENST00000011473 BICRAQ9NZM4 1560 aa23.22■■□□□ 1.31
SYPL1-201ENST00000011473 SHROOM4Q9ULL8 1493 aa23.08■■□□□ 1.29
SYPL1-201ENST00000011473 DNAJC5BQ9UF47 199 aa22.71■■□□□ 1.23
SYPL1-201ENST00000011473 EIF4G1Q04637 1599 aaKnown RBP22.6■■□□□ 1.21
SYPL1-201ENST00000011473 CECR2Q9BXF3 1484 aa22.52■■□□□ 1.2
SYPL1-201ENST00000011473 CC2D2AQ9P2K1 1620 aa22.46■■□□□ 1.19
SYPL1-201ENST00000011473 SMARCA4P51532 1647 aa22.32■■□□□ 1.16
SYPL1-201ENST00000011473 BAZ1AQ9NRL2 1556 aaPredicted RBP22.31■■□□□ 1.16
SYPL1-201ENST00000011473 MROH2BQ7Z745 1585 aa22.28■■□□□ 1.16
SYPL1-201ENST00000011473 ATAD2BQ9ULI0 1458 aa22.18■■□□□ 1.14
SYPL1-201ENST00000011473 SMARCA2P51531 1590 aa22.1■■□□□ 1.13
SYPL1-201ENST00000011473 NCAPD3P42695 1498 aa22.09■■□□□ 1.13
SYPL1-201ENST00000011473 RSF1Q96T23 1441 aaPredicted RBP22.09■■□□□ 1.13
SYPL1-201ENST00000011473 PEG3Q9GZU2 1588 aa22.05■■□□□ 1.12
SYPL1-201ENST00000011473 WIZO95785 1651 aa22.04■■□□□ 1.12
SYPL1-201ENST00000011473 BAZ1BQ9UIG0 1483 aaKnown RBP22.01■■□□□ 1.11
SYPL1-201ENST00000011473 HMGXB3Q12766 1538 aa21.98■■□□□ 1.11
SYPL1-201ENST00000011473 SUPT5HO00267 1087 aaKnown RBP21.8■■□□□ 1.08
SYPL1-201ENST00000011473 TOP2AP11388 1531 aaKnown RBP21.77■■□□□ 1.07
SYPL1-201ENST00000011473 NESP48681 1621 aa21.61■■□□□ 1.05
SYPL1-201ENST00000011473 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
SYPL1-201ENST00000011473 CADPSQ9ULU8 1353 aa21.5■■□□□ 1.03
SYPL1-201ENST00000011473 LAMC3Q9Y6N6 1575 aa21.45■■□□□ 1.02
SYPL1-201ENST00000011473 ERCC6Q03468 1493 aa21.4■■□□□ 1.02
SYPL1-201ENST00000011473 CFTRP13569 1480 aa21.4■■□□□ 1.02
SYPL1-201ENST00000011473 PDS5BQ9NTI5 1447 aa21.34■■□□□ 1.01
SYPL1-201ENST00000011473 KIF21AQ7Z4S6 1674 aa21.27■■□□□ 1
SYPL1-201ENST00000011473 FANCD2Q9BXW9 1451 aa21.26■□□□□ 0.99
SYPL1-201ENST00000011473 CEP164Q9UPV0 1460 aa21.2■□□□□ 0.98
SYPL1-201ENST00000011473 THOC2Q8NI27 1593 aaKnown RBP21.14■□□□□ 0.98
SYPL1-201ENST00000011473 PRDM2Q13029 1718 aa21.14■□□□□ 0.97
SYPL1-201ENST00000011473 MRC2Q9UBG0 1479 aa21.11■□□□□ 0.97
SYPL1-201ENST00000011473 URB2Q14146 1524 aaKnown RBP21.05■□□□□ 0.96
SYPL1-201ENST00000011473 WDR62O43379 1518 aa21.02■□□□□ 0.96
SYPL1-201ENST00000011473 CUX2O14529 1486 aa21.02■□□□□ 0.95
SYPL1-201ENST00000011473 TOPBP1Q92547 1522 aa20.94■□□□□ 0.94
SYPL1-201ENST00000011473 DNMBPQ6XZF7 1577 aa20.89■□□□□ 0.93
SYPL1-201ENST00000011473 ABCC8Q09428 1581 aa20.89■□□□□ 0.93
SYPL1-201ENST00000011473 CUX1P39880 1505 aa20.87■□□□□ 0.93
SYPL1-201ENST00000011473 WRNQ14191 1432 aaPredicted RBP eCLIP20.81■□□□□ 0.92
SYPL1-201ENST00000011473 POLA1P09884 1462 aaPredicted RBP20.79■□□□□ 0.92
SYPL1-201ENST00000011473 FGD5Q6ZNL6 1462 aa20.77■□□□□ 0.92
SYPL1-201ENST00000011473 SYNJ1O43426 1573 aa20.76■□□□□ 0.91
SYPL1-201ENST00000011473 RAD54L2Q9Y4B4 1467 aa20.75■□□□□ 0.91
SYPL1-201ENST00000011473 IFT140Q96RY7 1462 aa20.72■□□□□ 0.91
SYPL1-201ENST00000011473 SOGA1O94964 1423 aa20.71■□□□□ 0.91
SYPL1-201ENST00000011473 ZNF608Q9ULD9 1512 aaPredicted RBP20.7■□□□□ 0.9
SYPL1-201ENST00000011473 TOP2BQ02880 1626 aa20.7■□□□□ 0.9
SYPL1-201ENST00000011473 TARBP1Q13395 1621 aaKnown RBP20.67■□□□□ 0.9
SYPL1-201ENST00000011473 BIVM-ERCC5R4GMW8 1640 aa20.67■□□□□ 0.9
SYPL1-201ENST00000011473 TDRD9Q8NDG6 1382 aaKnown RBP20.62■□□□□ 0.89
SYPL1-201ENST00000011473 AQRO60306 1485 aaKnown RBP eCLIP20.62■□□□□ 0.891e-6■■■□□ 14.8
SYPL1-201ENST00000011473 EIF4G3O43432 1585 aaKnown RBP20.57■□□□□ 0.88
SYPL1-201ENST00000011473 ABCA10Q8WWZ4 1543 aa20.54■□□□□ 0.88
SYPL1-201ENST00000011473 WDR97A6NE52 1622 aa20.52■□□□□ 0.87
SYPL1-201ENST00000011473 TRIM41Q8WV44 630 aa20.51■□□□□ 0.87
SYPL1-201ENST00000011473 GAPVD1Q14C86 1478 aa20.46■□□□□ 0.87
SYPL1-201ENST00000011473 ABCA5Q8WWZ7 1642 aa20.43■□□□□ 0.86
SYPL1-201ENST00000011473 GRIN2BQ13224 1484 aa20.41■□□□□ 0.86
SYPL1-201ENST00000011473 CHIC1Q5VXU3 224 aa20.41■□□□□ 0.86
SYPL1-201ENST00000011473 SNAPC4Q5SXM2 1469 aa20.4■□□□□ 0.86
SYPL1-201ENST00000011473 FBLN2P98095 1184 aa20.38■□□□□ 0.85
SYPL1-201ENST00000011473 PBRM1Q86U86 1689 aa20.35■□□□□ 0.85
SYPL1-201ENST00000011473 KIF27Q86VH2 1401 aa20.34■□□□□ 0.85
SYPL1-201ENST00000011473 RUSC2Q8N2Y8 1516 aa20.32■□□□□ 0.84
SYPL1-201ENST00000011473 MAGI1Q96QZ7 1491 aaPredicted RBP20.31■□□□□ 0.84
SYPL1-201ENST00000011473 CHMP7Q8WUX9 453 aaPredicted RBP20.29■□□□□ 0.84
SYPL1-201ENST00000011473 ERICH3Q5RHP9 1530 aa20.28■□□□□ 0.84
SYPL1-201ENST00000011473 IGF1RP08069 1367 aa20.27■□□□□ 0.84
SYPL1-201ENST00000011473 OSCARQ8IYS5 282 aa20.26■□□□□ 0.83
SYPL1-201ENST00000011473 SYNJ2O15056 1496 aa20.25■□□□□ 0.83
SYPL1-201ENST00000011473 CHD1O14646 1710 aa20.24■□□□□ 0.83
SYPL1-201ENST00000011473 ADAMTS12P58397 1594 aa20.23■□□□□ 0.83
SYPL1-201ENST00000011473 FHAD1B1AJZ9 1412 aa20.21■□□□□ 0.83
SYPL1-201ENST00000011473 DNAJC5Q9H3Z4 198 aa20.2■□□□□ 0.82
SYPL1-201ENST00000011473 FAM9AQ8IZU1 332 aaPredicted RBP20.18■□□□□ 0.82
SYPL1-201ENST00000011473 GRIN2AQ12879 1464 aa20.16■□□□□ 0.82
SYPL1-201ENST00000011473 CARMIL1Q5VZK9 1371 aa20.15■□□□□ 0.82
SYPL1-201ENST00000011473 CUL7Q14999 1698 aa20.11■□□□□ 0.81
SYPL1-201ENST00000011473 CSRNP3Q8WYN3 585 aa20.07■□□□□ 0.8
SYPL1-201ENST00000011473 CEP170Q5SW79 1584 aa20.06■□□□□ 0.8
SYPL1-201ENST00000011473 NUP160Q12769 1436 aa20.05■□□□□ 0.8
SYPL1-201ENST00000011473 EEA1Q15075 1411 aa20.03■□□□□ 0.8
SYPL1-201ENST00000011473 CLASP1Q7Z460 1538 aa20.03■□□□□ 0.8
SYPL1-201ENST00000011473 RAPGEF2Q9Y4G8 1499 aa20.02■□□□□ 0.8
SYPL1-201ENST00000011473 PRXQ9BXM0 1461 aa20.01■□□□□ 0.79
SYPL1-201ENST00000011473 EHMT2Q96KQ7 1210 aa19.99■□□□□ 0.79
SYPL1-201ENST00000011473 ARHGEF11O15085 1522 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms