Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC22.21■■□□□ 1.151e-11■■■□□ 15.4
U2AF1Q01081 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.091e-11■■■□□ 15.4
U2AF1Q01081 CDRT4-203ENST00000524205 632 ntAPPRIS ALT2 TSL 213.96□□□□□ -0.171e-11■■■□□ 15.4
U2AF1Q01081 TVP23C-CDRT4-201ENST00000481756 556 ntTSL 48.66□□□□□ -1.021e-11■■■□□ 15.4
U2AF1Q01081 TVP23C-CDRT4-202ENST00000518506 520 ntTSL 52.23□□□□□ -2.051e-11■■■□□ 15.4
U2AF1Q01081 BCL6-210ENST00000496823 1138 ntTSL 318.56■□□□□ 0.567e-7■■■□□ 15.3
U2AF1Q01081 BCL6-211ENST00000621333 3399 ntTSL 5 BASIC14.37□□□□□ -0.117e-7■■■□□ 15.3
U2AF1Q01081 BCL6-202ENST00000406870 3569 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.547e-7■■■□□ 15.3
U2AF1Q01081 BCL6-209ENST00000480458 342 ntTSL 511.11□□□□□ -0.637e-7■■■□□ 15.3
U2AF1Q01081 BCL6-207ENST00000470319 526 ntTSL 43.64□□□□□ -1.837e-7■■■□□ 15.3
U2AF1Q01081 LUC7L2-209ENST00000608368 551 ntTSL 419.36■□□□□ 0.691e-8■■■□□ 15.3
U2AF1Q01081 NUP214-224ENST00000530863 560 ntTSL 55.65□□□□□ -1.52e-8■■■□□ 15.3
U2AF1Q01081 UTRN-203ENST00000367526 3220 ntTSL 5 BASIC12.04□□□□□ -0.482e-6■■■□□ 15.3
U2AF1Q01081 SRRM2-203ENST00000570655 575 ntTSL 211.86□□□□□ -0.511e-14■■■□□ 15.3
U2AF1Q01081 RBM33-203ENST00000341148 7058 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.072e-6■■■□□ 15.3
U2AF1Q01081 RBM33-207ENST00000401878 10149 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.13e-8■■■□□ 15.3
U2AF1Q01081 USP48-214ENST00000532737 680 ntTSL 433.22■■■□□ 2.913e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC26.85■■□□□ 1.893e-7■■■□□ 15.3
U2AF1Q01081 SF1-213ENST00000472725 632 ntTSL 326.67■■□□□ 1.863e-7■■■□□ 15.3
U2AF1Q01081 RUNX1-208ENST00000455571 610 ntTSL 324.47■■□□□ 1.513e-7■■■□□ 15.3
U2AF1Q01081 SF1-212ENST00000463343 983 ntTSL 223.69■■□□□ 1.383e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-203ENST00000439080 1388 ntTSL 222.62■■□□□ 1.213e-7■■■□□ 15.3
U2AF1Q01081 MRPL16-203ENST00000531802 557 ntTSL 222.56■■□□□ 1.23e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-225ENST00000621715 816 ntTSL 322.42■■□□□ 1.183e-7■■■□□ 15.3
U2AF1Q01081 USP48-210ENST00000489108 443 ntTSL 221.58■■□□□ 1.053e-7■■■□□ 15.3
U2AF1Q01081 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.973e-7■■■□□ 15.3
U2AF1Q01081 RINT1-206ENST00000493041 563 ntTSL 520.41■□□□□ 0.863e-7■■■□□ 15.3
U2AF1Q01081 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC20.25■□□□□ 0.833e-7■■■□□ 15.3
U2AF1Q01081 RINT1-205ENST00000482041 578 ntTSL 419.75■□□□□ 0.753e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-231ENST00000639599 1283 ntTSL 519.62■□□□□ 0.733e-7■■■□□ 15.3
U2AF1Q01081 SS18L1-205ENST00000492466 899 ntTSL 519.54■□□□□ 0.723e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-204ENST00000472476 1001 ntTSL 519.19■□□□□ 0.663e-7■■■□□ 15.3
U2AF1Q01081 RINT1-202ENST00000467392 837 ntTSL 318.63■□□□□ 0.573e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.343e-7■■■□□ 15.3
U2AF1Q01081 RINT1-201ENST00000257700 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.253e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-202ENST00000315091 1835 ntTSL 5 BASIC16.61■□□□□ 0.253e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-229ENST00000638264 774 ntTSL 1 (best) BASIC15.5■□□□□ 0.073e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-226ENST00000621790 1008 ntTSL 5 BASIC15.5■□□□□ 0.073e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-217ENST00000616545 920 ntTSL 5 BASIC15.5■□□□□ 0.073e-7■■■□□ 15.3
U2AF1Q01081 RUNX1-214ENST00000475045 1582 ntTSL 515.25■□□□□ 0.033e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-221ENST00000619555 682 ntTSL 514.95□□□□□ -0.023e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-223ENST00000620632 706 ntTSL 314.47□□□□□ -0.093e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-206ENST00000473869 1946 ntTSL 514.37□□□□□ -0.113e-7■■■□□ 15.3
U2AF1Q01081 RINT1-208ENST00000497979 2627 ntTSL 514.29□□□□□ -0.123e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-230ENST00000639083 2269 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.143e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-218ENST00000617172 980 ntTSL 512.93□□□□□ -0.343e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-211ENST00000610369 563 ntTSL 512.93□□□□□ -0.343e-7■■■□□ 15.3
U2AF1Q01081 AL109811.4-201ENST00000614757 1793 ntTSL 5 BASIC12.61□□□□□ -0.393e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-227ENST00000622057 706 ntTSL 512.48□□□□□ -0.413e-7■■■□□ 15.3
U2AF1Q01081 SS18L1-201ENST00000331758 4493 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.423e-7■■■□□ 15.3
U2AF1Q01081 MRPL16-204ENST00000534340 574 ntTSL 311.29□□□□□ -0.63e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-213ENST00000611963 739 ntTSL 510.74□□□□□ -0.693e-7■■■□□ 15.3
U2AF1Q01081 USP48-212ENST00000527823 554 ntTSL 410.69□□□□□ -0.73e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-216ENST00000614494 515 ntTSL 59.61□□□□□ -0.873e-7■■■□□ 15.3
U2AF1Q01081 MRPL16-202ENST00000525470 922 ntTSL 55.92□□□□□ -1.463e-7■■■□□ 15.3
U2AF1Q01081 AL109811.4-202ENST00000611136 700 ntTSL 55.71□□□□□ -1.53e-7■■■□□ 15.3
U2AF1Q01081 AL109811.4-203ENST00000612542 554 ntAPPRIS P1 TSL 54.31□□□□□ -1.723e-7■■■□□ 15.3
U2AF1Q01081 TARDBP-208ENST00000477447 409 ntTSL 54.31□□□□□ -1.723e-7■■■□□ 15.3
U2AF1Q01081 SRCAP-203ENST00000411466 836 ntTSL 329.72■■■□□ 2.359e-23■■■□□ 15.3
U2AF1Q01081 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC9.56□□□□□ -0.889e-23■■■□□ 15.3
U2AF1Q01081 PIK3CB-204ENST00000462898 4747 ntTSL 521.88■■□□□ 1.091e-7■■■□□ 15.3
U2AF1Q01081 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.881e-7■■■□□ 15.3
U2AF1Q01081 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.021e-7■■■□□ 15.3
U2AF1Q01081 SRRM2-214ENST00000573451 441 ntTSL 310.4□□□□□ -0.744e-16■■■□□ 15.3
U2AF1Q01081 LINC01021-202ENST00000505775 946 ntTSL 1 (best) BASIC15.2■□□□□ 0.025e-7■■■□□ 15.3
U2AF1Q01081 LINC01021-203ENST00000510165 1106 ntTSL 1 (best) BASIC14.62□□□□□ -0.075e-7■■■□□ 15.3
U2AF1Q01081 RIF1-202ENST00000414861 2534 ntTSL 1 (best)12.91□□□□□ -0.345e-9■■■□□ 15.3
U2AF1Q01081 LINC01021-206ENST00000514844 667 ntTSL 1 (best)6.6□□□□□ -1.355e-7■■■□□ 15.3
U2AF1Q01081 LINC01021-201ENST00000503107 458 ntTSL 1 (best)5.25□□□□□ -1.575e-7■■■□□ 15.3
U2AF1Q01081 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.69□□□□□ -1.665e-7■■■□□ 15.3
U2AF1Q01081 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.84□□□□□ -1.89e-7■■■□□ 15.3
U2AF1Q01081 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.5□□□□□ -2.019e-7■■■□□ 15.3
U2AF1Q01081 PGK1-201ENST00000373316 4887 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.281e-6■■■□□ 15.3
U2AF1Q01081 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC30.78■■■□□ 2.523e-10■■■□□ 15.2
U2AF1Q01081 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.433e-10■■■□□ 15.2
U2AF1Q01081 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.343e-10■■■□□ 15.2
U2AF1Q01081 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.063e-10■■■□□ 15.2
U2AF1Q01081 DDX42-204ENST00000577940 1427 ntTSL 511.11□□□□□ -0.633e-10■■■□□ 15.2
U2AF1Q01081 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC9.25□□□□□ -0.933e-10■■■□□ 15.2
U2AF1Q01081 DDX42-218ENST00000584261 510 ntTSL 38.15□□□□□ -1.13e-10■■■□□ 15.2
U2AF1Q01081 WAC-210ENST00000439676 2762 ntTSL 56.07□□□□□ -1.441e-7■■■□□ 15.2
U2AF1Q01081 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.59□□□□□ -1.511e-7■■■□□ 15.2
U2AF1Q01081 WAC-206ENST00000414108 816 ntTSL 35.29□□□□□ -1.561e-7■■■□□ 15.2
U2AF1Q01081 NKTR-201ENST00000232978 7343 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.188e-9■■■□□ 15.2
U2AF1Q01081 NKTR-211ENST00000468735 7964 ntTSL 29.68□□□□□ -0.868e-9■■■□□ 15.2
U2AF1Q01081 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC5.18□□□□□ -1.588e-9■■■□□ 15.2
U2AF1Q01081 NKTR-202ENST00000429888 7325 ntTSL 55.03□□□□□ -1.68e-9■■■□□ 15.2
U2AF1Q01081 TRA2A-204ENST00000474586 868 ntTSL 328.37■■■□□ 2.131e-7■■■□□ 15.2
U2AF1Q01081 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.461e-7■■■□□ 15.2
U2AF1Q01081 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.21e-7■■■□□ 15.2
U2AF1Q01081 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.071e-7■■■□□ 15.2
U2AF1Q01081 TRA2A-208ENST00000490942 862 ntTSL 1 (best)21.13■□□□□ 0.971e-7■■■□□ 15.2
U2AF1Q01081 TRA2A-203ENST00000448549 582 ntTSL 420.79■□□□□ 0.921e-7■■■□□ 15.2
U2AF1Q01081 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.791e-7■■■□□ 15.2
U2AF1Q01081 TRA2A-209ENST00000494255 1653 ntTSL 1 (best)16.67■□□□□ 0.261e-7■■■□□ 15.2
U2AF1Q01081 DOT1L-204ENST00000457590 2907 ntTSL 520.1■□□□□ 0.812e-6■■■□□ 15.2
U2AF1Q01081 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.122e-6■■■□□ 15.2
U2AF1Q01081 BMP2K-205ENST00000505725 566 ntTSL 36.33□□□□□ -1.45e-7■■■□□ 15.1
U2AF1Q01081 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC18.6■□□□□ 0.572e-6■■■□□ 15.1
U2AF1Q01081 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.52e-6■■■□□ 15.1
Retrieved 100 of 10,096 protein–RNA pairs in 61.2 ms