RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 AEBP2Q6ZN18 517 aaPredicted RBP26.42■■□□□ 1.82
USP48-212ENST00000527823 CHIC1Q5VXU3 224 aa25.92■■□□□ 1.74
USP48-212ENST00000527823 PHF23Q9BUL5 403 aaPredicted RBP22.86■■□□□ 1.25
USP48-212ENST00000527823 SENP3Q9H4L4 574 aaPredicted RBP22.33■■□□□ 1.17
USP48-212ENST00000527823 PLPPR3Q6T4P5 718 aa21.11■□□□□ 0.97
USP48-212ENST00000527823 NISCHQ9Y2I1 1504 aa21.04■□□□□ 0.96
USP48-212ENST00000527823 FOXD1Q16676 465 aa20.76■□□□□ 0.91
USP48-212ENST00000527823 PPP6R1Q9UPN7 881 aa20.14■□□□□ 0.81
USP48-212ENST00000527823 ADRA2BP18089 450 aa20.13■□□□□ 0.81
USP48-212ENST00000527823 PIAS4Q8N2W9 510 aaPredicted RBP19.61■□□□□ 0.73
USP48-212ENST00000527823 ABCC9O60706 1549 aa19.38■□□□□ 0.69
USP48-212ENST00000527823 CCDC180Q9P1Z9 1646 aa19.16■□□□□ 0.66
USP48-212ENST00000527823 MSH5O43196 834 aa19.01■□□□□ 0.63
USP48-212ENST00000527823 PPP4R3CPQ6ZMV5 832 aa18.66■□□□□ 0.58
USP48-212ENST00000527823 KCNA4P22459 653 aa18.45■□□□□ 0.54
USP48-212ENST00000527823 DNAJC5BQ9UF47 199 aa18.41■□□□□ 0.54
USP48-212ENST00000527823 SCAF1Q9H7N4 1312 aaKnown RBP18.33■□□□□ 0.53
USP48-212ENST00000527823 RB1CC1Q8TDY2 1594 aa18.32■□□□□ 0.52
USP48-212ENST00000527823 MAPK8IP2Q13387 824 aaPredicted RBP18.23■□□□□ 0.51
USP48-212ENST00000527823 NCBP3Q53F19 620 aaKnown RBP18.17■□□□□ 0.5
USP48-212ENST00000527823 NACADO15069 1562 aa18.09■□□□□ 0.49
USP48-212ENST00000527823 UNC13AQ9UPW8 1703 aa18.07■□□□□ 0.48
USP48-212ENST00000527823 CNKSR2Q8WXI2 1034 aa18.06■□□□□ 0.48
USP48-212ENST00000527823 NPM3O75607 178 aaKnown RBP17.96■□□□□ 0.47
USP48-212ENST00000527823 BICRAQ9NZM4 1560 aa17.87■□□□□ 0.45
USP48-212ENST00000527823 PABPN1Q86U42 306 aaKnown RBP eCLIP17.86■□□□□ 0.45
USP48-212ENST00000527823 DMRT2Q9Y5R5 561 aa17.86■□□□□ 0.45
USP48-212ENST00000527823 MYO15BQ96JP2 1530 aa17.73■□□□□ 0.43
USP48-212ENST00000527823 RNF216Q9NWF9 866 aaPredicted RBP17.66■□□□□ 0.42
USP48-212ENST00000527823 DCAF8L2P0C7V8 631 aa17.64■□□□□ 0.41
USP48-212ENST00000527823 SLC4A1APQ9BWU0 796 aaKnown RBP17.57■□□□□ 0.4
USP48-212ENST00000527823 CC2D2AQ9P2K1 1620 aa17.55■□□□□ 0.4
USP48-212ENST00000527823 SHROOM4Q9ULL8 1493 aa17.55■□□□□ 0.4
USP48-212ENST00000527823 HOXD11P31277 338 aaPredicted RBP17.54■□□□□ 0.4
USP48-212ENST00000527823 CECR2Q9BXF3 1484 aa17.49■□□□□ 0.39
USP48-212ENST00000527823 EIF4G1Q04637 1599 aaKnown RBP17.43■□□□□ 0.38
USP48-212ENST00000527823 ZCCHC6Q5VYS8 1495 aaKnown RBP17.42■□□□□ 0.38
USP48-212ENST00000527823 SCRIBQ14160 1630 aa17.39■□□□□ 0.38
USP48-212ENST00000527823 DCAF1Q9Y4B6 1507 aa17.37■□□□□ 0.37
USP48-212ENST00000527823 EHMT2Q96KQ7 1210 aa17.33■□□□□ 0.36
USP48-212ENST00000527823 DCAF8L1A6NGE4 600 aa17.16■□□□□ 0.34
USP48-212ENST00000527823 DNAJC5Q9H3Z4 198 aa17.12■□□□□ 0.33
USP48-212ENST00000527823 POTEDQ86YR6 584 aa17.07■□□□□ 0.32
USP48-212ENST00000527823 CSRNP3Q8WYN3 585 aa17.01■□□□□ 0.31
USP48-212ENST00000527823 ZBTB22O15209 634 aa16.98■□□□□ 0.31
USP48-212ENST00000527823 SLC4A2P04920 1241 aa16.92■□□□□ 0.3
USP48-212ENST00000527823 FOXD4L1Q9NU39 408 aa16.88■□□□□ 0.29
USP48-212ENST00000527823 CUX2O14529 1486 aa16.86■□□□□ 0.29
USP48-212ENST00000527823 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.77■□□□□ 0.281e-8■■□□□ 11.4
USP48-212ENST00000527823 ERCC6Q03468 1493 aa16.73■□□□□ 0.27
USP48-212ENST00000527823 NCAPD3P42695 1498 aa16.65■□□□□ 0.26
USP48-212ENST00000527823 HMGXB3Q12766 1538 aa16.6■□□□□ 0.25
USP48-212ENST00000527823 THOC2Q8NI27 1593 aaKnown RBP16.6■□□□□ 0.25
USP48-212ENST00000527823 ATAD2BQ9ULI0 1458 aa16.58■□□□□ 0.24
USP48-212ENST00000527823 NESP48681 1621 aa16.57■□□□□ 0.24
USP48-212ENST00000527823 SMARCA4P51532 1647 aa16.56■□□□□ 0.24
USP48-212ENST00000527823 MYCNP04198 464 aaPredicted RBP16.55■□□□□ 0.24
USP48-212ENST00000527823 SMARCA2P51531 1590 aa16.53■□□□□ 0.24
USP48-212ENST00000527823 U3KPZ7 1027 aaPredicted RBP16.51■□□□□ 0.23
USP48-212ENST00000527823 KIF21AQ7Z4S6 1674 aa16.46■□□□□ 0.23
USP48-212ENST00000527823 LAMC3Q9Y6N6 1575 aa16.41■□□□□ 0.22
USP48-212ENST00000527823 BAZ1BQ9UIG0 1483 aaKnown RBP16.41■□□□□ 0.22
USP48-212ENST00000527823 PEG3Q9GZU2 1588 aa16.4■□□□□ 0.22
USP48-212ENST00000527823 BAZ1AQ9NRL2 1556 aaPredicted RBP16.37■□□□□ 0.21
USP48-212ENST00000527823 RNF39Q9H2S5 420 aa16.33■□□□□ 0.2
USP48-212ENST00000527823 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.29■□□□□ 0.2
USP48-212ENST00000527823 HNRNPUL2Q1KMD3 747 aaKnown RBP16.29■□□□□ 0.2
USP48-212ENST00000527823 SAMD1Q6SPF0 538 aaPredicted RBP16.26■□□□□ 0.19
USP48-212ENST00000527823 ATXN8OSP0DMR3 200 aa16.23■□□□□ 0.19
USP48-212ENST00000527823 MROH2BQ7Z745 1585 aa16.22■□□□□ 0.19
USP48-212ENST00000527823 WDR62O43379 1518 aa16.22■□□□□ 0.19
USP48-212ENST00000527823 PDS5BQ9NTI5 1447 aa16.21■□□□□ 0.19
USP48-212ENST00000527823 TRIM41Q8WV44 630 aa16.21■□□□□ 0.19
USP48-212ENST00000527823 MRC2Q9UBG0 1479 aa16.19■□□□□ 0.18
USP48-212ENST00000527823 ATF5Q9Y2D1 282 aaPredicted RBP16.17■□□□□ 0.18
USP48-212ENST00000527823 C1QBPQ07021 282 aaKnown RBP16.12■□□□□ 0.17
USP48-212ENST00000527823 CADPSQ9ULU8 1353 aa16.09■□□□□ 0.17
USP48-212ENST00000527823 APLP2Q06481 763 aa16.06■□□□□ 0.16
USP48-212ENST00000527823 WIZO95785 1651 aa16.05■□□□□ 0.16
USP48-212ENST00000527823 CEP164Q9UPV0 1460 aa16.04■□□□□ 0.16
USP48-212ENST00000527823 SPINK5Q9NQ38 1064 aaPredicted RBP16.03■□□□□ 0.16
USP48-212ENST00000527823 FANCD2Q9BXW9 1451 aa15.97■□□□□ 0.15
USP48-212ENST00000527823 CAPN15O75808 1086 aa15.95■□□□□ 0.14
USP48-212ENST00000527823 RIMBP3CA6NJZ7 1639 aa15.94■□□□□ 0.14
USP48-212ENST00000527823 RIMBP3BA6NNM3 1639 aa15.94■□□□□ 0.14
USP48-212ENST00000527823 RIMBP3Q9UFD9 1639 aa15.94■□□□□ 0.14
USP48-212ENST00000527823 TRHP20396 242 aaPredicted RBP15.92■□□□□ 0.14
USP48-212ENST00000527823 URB2Q14146 1524 aaKnown RBP15.91■□□□□ 0.14
USP48-212ENST00000527823 PRDM2Q13029 1718 aa15.91■□□□□ 0.14
USP48-212ENST00000527823 CFTRP13569 1480 aa15.9■□□□□ 0.14
USP48-212ENST00000527823 ZNF219Q9P2Y4 722 aaPredicted RBP15.87■□□□□ 0.13
USP48-212ENST00000527823 OSCARQ8IYS5 282 aa15.84■□□□□ 0.13
USP48-212ENST00000527823 TOP2AP11388 1531 aaKnown RBP15.82■□□□□ 0.12
USP48-212ENST00000527823 ARHGEF11O15085 1522 aa15.81■□□□□ 0.12
USP48-212ENST00000527823 CACNB1Q02641 598 aaPredicted RBP15.81■□□□□ 0.12
USP48-212ENST00000527823 ZNF608Q9ULD9 1512 aaPredicted RBP15.76■□□□□ 0.11
USP48-212ENST00000527823 EIF4G3O43432 1585 aaKnown RBP15.75■□□□□ 0.11
USP48-212ENST00000527823 CHD1O14646 1710 aa15.72■□□□□ 0.11
USP48-212ENST00000527823 IFT140Q96RY7 1462 aa15.71■□□□□ 0.1
USP48-212ENST00000527823 ABCB7O75027 752 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms