RNA–Protein interactions for RNA: ENST00000617172.4

TARDBP-218, Transcript of TAR DNA binding protein, humanhuman

TSL 5

Gene TARDBP, Length 980 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-218ENST00000617172 NISCHQ9Y2I1 1504 aa23.83■■□□□ 1.41
TARDBP-218ENST00000617172 CCDC180Q9P1Z9 1646 aa21.25■□□□□ 0.99
TARDBP-218ENST00000617172 ABCC9O60706 1549 aa21.14■□□□□ 0.97
TARDBP-218ENST00000617172 RB1CC1Q8TDY2 1594 aa20.21■□□□□ 0.83
TARDBP-218ENST00000617172 NACADO15069 1562 aa20.13■□□□□ 0.81
TARDBP-218ENST00000617172 DCAF8L2P0C7V8 631 aa20.13■□□□□ 0.81
TARDBP-218ENST00000617172 MYO15BQ96JP2 1530 aa19.94■□□□□ 0.78
TARDBP-218ENST00000617172 ZCCHC6Q5VYS8 1495 aaKnown RBP19.76■□□□□ 0.75
TARDBP-218ENST00000617172 PABPN1Q86U42 306 aaKnown RBP eCLIP19.75■□□□□ 0.75
TARDBP-218ENST00000617172 DCAF1Q9Y4B6 1507 aa19.72■□□□□ 0.75
TARDBP-218ENST00000617172 DNAJC5BQ9UF47 199 aa19.72■□□□□ 0.75
TARDBP-218ENST00000617172 UNC13AQ9UPW8 1703 aa19.57■□□□□ 0.72
TARDBP-218ENST00000617172 BICRAQ9NZM4 1560 aa19.54■□□□□ 0.72
TARDBP-218ENST00000617172 SHROOM4Q9ULL8 1493 aa19.42■□□□□ 0.7
TARDBP-218ENST00000617172 SCRIBQ14160 1630 aa19.34■□□□□ 0.69
TARDBP-218ENST00000617172 EIF4G1Q04637 1599 aaKnown RBP19.09■□□□□ 0.65
TARDBP-218ENST00000617172 CC2D2AQ9P2K1 1620 aa19.07■□□□□ 0.64
TARDBP-218ENST00000617172 CECR2Q9BXF3 1484 aa19.05■□□□□ 0.64
TARDBP-218ENST00000617172 NCAPD3P42695 1498 aa18.62■□□□□ 0.57
TARDBP-218ENST00000617172 ATAD2BQ9ULI0 1458 aa18.55■□□□□ 0.56
TARDBP-218ENST00000617172 SMARCA2P51531 1590 aa18.51■□□□□ 0.55
TARDBP-218ENST00000617172 SMARCA4P51532 1647 aa18.5■□□□□ 0.55
TARDBP-218ENST00000617172 BAZ1AQ9NRL2 1556 aaPredicted RBP18.49■□□□□ 0.55
TARDBP-218ENST00000617172 HMGXB3Q12766 1538 aa18.44■□□□□ 0.54
TARDBP-218ENST00000617172 BAZ1BQ9UIG0 1483 aaKnown RBP18.37■□□□□ 0.53
TARDBP-218ENST00000617172 PEG3Q9GZU2 1588 aa18.36■□□□□ 0.53
TARDBP-218ENST00000617172 MROH2BQ7Z745 1585 aa18.33■□□□□ 0.52
TARDBP-218ENST00000617172 ERCC6Q03468 1493 aa18.28■□□□□ 0.52
TARDBP-218ENST00000617172 CUX2O14529 1486 aa18.2■□□□□ 0.5
TARDBP-218ENST00000617172 NESP48681 1621 aa18.17■□□□□ 0.5
TARDBP-218ENST00000617172 LAMC3Q9Y6N6 1575 aa18.12■□□□□ 0.49
TARDBP-218ENST00000617172 PDS5BQ9NTI5 1447 aa18.08■□□□□ 0.49
TARDBP-218ENST00000617172 CADPSQ9ULU8 1353 aa18.07■□□□□ 0.48
TARDBP-218ENST00000617172 DNAJC5Q9H3Z4 198 aa18.07■□□□□ 0.48
TARDBP-218ENST00000617172 WIZO95785 1651 aa18.06■□□□□ 0.48
TARDBP-218ENST00000617172 RSF1Q96T23 1441 aaPredicted RBP18.06■□□□□ 0.48
TARDBP-218ENST00000617172 THOC2Q8NI27 1593 aaKnown RBP17.91■□□□□ 0.46
TARDBP-218ENST00000617172 TOP2AP11388 1531 aaKnown RBP17.91■□□□□ 0.46
TARDBP-218ENST00000617172 CFTRP13569 1480 aa17.87■□□□□ 0.45
TARDBP-218ENST00000617172 KIF21AQ7Z4S6 1674 aa17.87■□□□□ 0.45
TARDBP-218ENST00000617172 MRC2Q9UBG0 1479 aa17.85■□□□□ 0.45
TARDBP-218ENST00000617172 CEP164Q9UPV0 1460 aa17.82■□□□□ 0.44
TARDBP-218ENST00000617172 FANCD2Q9BXW9 1451 aa17.82■□□□□ 0.44
TARDBP-218ENST00000617172 WDR62O43379 1518 aa17.77■□□□□ 0.44
TARDBP-218ENST00000617172 CCDC88BA6NC98 1476 aa17.73■□□□□ 0.43
TARDBP-218ENST00000617172 URB2Q14146 1524 aaKnown RBP17.62■□□□□ 0.41
TARDBP-218ENST00000617172 ABCC8Q09428 1581 aa17.53■□□□□ 0.4
TARDBP-218ENST00000617172 PRDM2Q13029 1718 aa17.53■□□□□ 0.4
TARDBP-218ENST00000617172 TOPBP1Q92547 1522 aa17.48■□□□□ 0.39
TARDBP-218ENST00000617172 OSCARQ8IYS5 282 aa17.48■□□□□ 0.39
TARDBP-218ENST00000617172 IFT140Q96RY7 1462 aa17.48■□□□□ 0.39
TARDBP-218ENST00000617172 SUPT5HO00267 1087 aaKnown RBP17.42■□□□□ 0.38
TARDBP-218ENST00000617172 DNMBPQ6XZF7 1577 aa17.4■□□□□ 0.38
TARDBP-218ENST00000617172 ZNF608Q9ULD9 1512 aaPredicted RBP17.37■□□□□ 0.37
TARDBP-218ENST00000617172 POLA1P09884 1462 aaPredicted RBP17.31■□□□□ 0.36
TARDBP-218ENST00000617172 TRIM41Q8WV44 630 aa17.3■□□□□ 0.36
TARDBP-218ENST00000617172 SOGA1O94964 1423 aa17.3■□□□□ 0.36
TARDBP-218ENST00000617172 AQRO60306 1485 aaKnown RBP eCLIP17.28■□□□□ 0.365e-11■■□□□ 14.4
TARDBP-218ENST00000617172 TARBP1Q13395 1621 aaKnown RBP17.26■□□□□ 0.35
TARDBP-218ENST00000617172 EIF4G3O43432 1585 aaKnown RBP17.24■□□□□ 0.35
TARDBP-218ENST00000617172 RAD54L2Q9Y4B4 1467 aa17.24■□□□□ 0.35
TARDBP-218ENST00000617172 TDRD9Q8NDG6 1382 aaKnown RBP17.22■□□□□ 0.35
TARDBP-218ENST00000617172 FGD5Q6ZNL6 1462 aa17.22■□□□□ 0.35
TARDBP-218ENST00000617172 CUX1P39880 1505 aa17.21■□□□□ 0.34
TARDBP-218ENST00000617172 FBLN2P98095 1184 aa17.2■□□□□ 0.34
TARDBP-218ENST00000617172 WDR97A6NE52 1622 aa17.16■□□□□ 0.34
TARDBP-218ENST00000617172 CHMP7Q8WUX9 453 aaPredicted RBP17.12■□□□□ 0.33
TARDBP-218ENST00000617172 GRIN2BQ13224 1484 aa17.11■□□□□ 0.33
TARDBP-218ENST00000617172 SNAPC4Q5SXM2 1469 aa17.08■□□□□ 0.32
TARDBP-218ENST00000617172 MAGI1Q96QZ7 1491 aaPredicted RBP17.08■□□□□ 0.32
TARDBP-218ENST00000617172 ARHGEF11O15085 1522 aa17.07■□□□□ 0.32
TARDBP-218ENST00000617172 WRNQ14191 1432 aaPredicted RBP eCLIP17.07■□□□□ 0.32
TARDBP-218ENST00000617172 ABCA10Q8WWZ4 1543 aa17.06■□□□□ 0.32
TARDBP-218ENST00000617172 GAPVD1Q14C86 1478 aa17.06■□□□□ 0.32
TARDBP-218ENST00000617172 RIMBP3CA6NJZ7 1639 aa17.06■□□□□ 0.32
TARDBP-218ENST00000617172 RIMBP3BA6NNM3 1639 aa17.06■□□□□ 0.32
TARDBP-218ENST00000617172 RIMBP3Q9UFD9 1639 aa17.06■□□□□ 0.32
TARDBP-218ENST00000617172 CYB5RLQ6IPT4 315 aa17.03■□□□□ 0.32
TARDBP-218ENST00000617172 CHD1O14646 1710 aa17.03■□□□□ 0.32
TARDBP-218ENST00000617172 SYNJ2O15056 1496 aa17.03■□□□□ 0.32
TARDBP-218ENST00000617172 TOP2BQ02880 1626 aa16.98■□□□□ 0.31
TARDBP-218ENST00000617172 SYNJ1O43426 1573 aa16.96■□□□□ 0.31
TARDBP-218ENST00000617172 ABCA5Q8WWZ7 1642 aa16.95■□□□□ 0.3
TARDBP-218ENST00000617172 BIVM-ERCC5R4GMW8 1640 aa16.94■□□□□ 0.3
TARDBP-218ENST00000617172 CLASP1Q7Z460 1538 aa16.92■□□□□ 0.3
TARDBP-218ENST00000617172 ARAP1Q96P48 1450 aa16.91■□□□□ 0.3
TARDBP-218ENST00000617172 PBRM1Q86U86 1689 aa16.9■□□□□ 0.3
TARDBP-218ENST00000617172 FHAD1B1AJZ9 1412 aa16.87■□□□□ 0.29
TARDBP-218ENST00000617172 GRIN2AQ12879 1464 aa16.86■□□□□ 0.29
TARDBP-218ENST00000617172 ERICH3Q5RHP9 1530 aa16.86■□□□□ 0.29
TARDBP-218ENST00000617172 NUP160Q12769 1436 aa16.81■□□□□ 0.28
TARDBP-218ENST00000617172 ADAMTS12P58397 1594 aa16.81■□□□□ 0.28
TARDBP-218ENST00000617172 TRHP20396 242 aaPredicted RBP16.79■□□□□ 0.28
TARDBP-218ENST00000617172 AEBP2Q6ZN18 517 aaPredicted RBP16.76■□□□□ 0.27
TARDBP-218ENST00000617172 KIF27Q86VH2 1401 aa16.74■□□□□ 0.27
TARDBP-218ENST00000617172 CEP170Q5SW79 1584 aa16.73■□□□□ 0.27
TARDBP-218ENST00000617172 JPH4Q96JJ6 628 aa16.72■□□□□ 0.27
TARDBP-218ENST00000617172 IGF1RP08069 1367 aa16.72■□□□□ 0.27
TARDBP-218ENST00000617172 PRG4Q92954 1404 aaPredicted RBP16.65■□□□□ 0.26
TARDBP-218ENST00000617172 SHROOM2Q13796 1616 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms