RNA–Protein interactions for RNA: ENST00000490942.1

TRA2A-208, Transcript of transformer 2 alpha homolog, humanhuman

TSL 1 (best)

Gene TRA2A, Length 862 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-208ENST00000490942 NISCHQ9Y2I1 1504 aa37.92■■■■□ 3.66
TRA2A-208ENST00000490942 CCDC180Q9P1Z9 1646 aa33.6■■■□□ 2.97
TRA2A-208ENST00000490942 ABCC9O60706 1549 aa32.41■■■□□ 2.78
TRA2A-208ENST00000490942 ZCCHC6Q5VYS8 1495 aaKnown RBP31.67■■■□□ 2.66
TRA2A-208ENST00000490942 MYO15BQ96JP2 1530 aa31.55■■■□□ 2.64
TRA2A-208ENST00000490942 NACADO15069 1562 aa31.53■■■□□ 2.64
TRA2A-208ENST00000490942 DCAF1Q9Y4B6 1507 aa31.5■■■□□ 2.63
TRA2A-208ENST00000490942 RB1CC1Q8TDY2 1594 aa31.44■■■□□ 2.62
TRA2A-208ENST00000490942 DCAF8L2P0C7V8 631 aa31.37■■■□□ 2.61
TRA2A-208ENST00000490942 UNC13AQ9UPW8 1703 aa30.59■■■□□ 2.49
TRA2A-208ENST00000490942 SCRIBQ14160 1630 aa30.52■■■□□ 2.48
TRA2A-208ENST00000490942 BICRAQ9NZM4 1560 aa30.42■■■□□ 2.46
TRA2A-208ENST00000490942 SHROOM4Q9ULL8 1493 aa30.34■■■□□ 2.45
TRA2A-208ENST00000490942 PABPN1Q86U42 306 aaKnown RBP eCLIP30.31■■■□□ 2.44
TRA2A-208ENST00000490942 EIF4G1Q04637 1599 aaKnown RBP29.61■■■□□ 2.33
TRA2A-208ENST00000490942 DNAJC5BQ9UF47 199 aa29.42■■■□□ 2.3
TRA2A-208ENST00000490942 CECR2Q9BXF3 1484 aa29.42■■■□□ 2.3
TRA2A-208ENST00000490942 BAZ1AQ9NRL2 1556 aaPredicted RBP29.39■■■□□ 2.29
TRA2A-208ENST00000490942 CC2D2AQ9P2K1 1620 aa29.38■■■□□ 2.29
TRA2A-208ENST00000490942 SMARCA4P51532 1647 aa29.31■■■□□ 2.28
TRA2A-208ENST00000490942 MROH2BQ7Z745 1585 aa29.16■■■□□ 2.26
TRA2A-208ENST00000490942 SMARCA2P51531 1590 aa29.13■■■□□ 2.25
TRA2A-208ENST00000490942 PEG3Q9GZU2 1588 aa29.13■■■□□ 2.25
TRA2A-208ENST00000490942 NCAPD3P42695 1498 aa29.1■■■□□ 2.25
TRA2A-208ENST00000490942 ATAD2BQ9ULI0 1458 aa29.1■■■□□ 2.25
TRA2A-208ENST00000490942 RSF1Q96T23 1441 aaPredicted RBP29■■■□□ 2.23
TRA2A-208ENST00000490942 HMGXB3Q12766 1538 aa28.98■■■□□ 2.23
TRA2A-208ENST00000490942 BAZ1BQ9UIG0 1483 aaKnown RBP28.87■■■□□ 2.21
TRA2A-208ENST00000490942 WIZO95785 1651 aa28.81■■■□□ 2.2
TRA2A-208ENST00000490942 TOP2AP11388 1531 aaKnown RBP28.64■■■□□ 2.17
TRA2A-208ENST00000490942 SUPT5HO00267 1087 aaKnown RBP28.37■■■□□ 2.13
TRA2A-208ENST00000490942 CCDC88BA6NC98 1476 aa28.26■■■□□ 2.11
TRA2A-208ENST00000490942 LAMC3Q9Y6N6 1575 aa28.24■■■□□ 2.11
TRA2A-208ENST00000490942 CADPSQ9ULU8 1353 aa28.24■■■□□ 2.11
TRA2A-208ENST00000490942 CFTRP13569 1480 aa28.15■■■□□ 2.1
TRA2A-208ENST00000490942 NESP48681 1621 aa28.13■■■□□ 2.09
TRA2A-208ENST00000490942 PDS5BQ9NTI5 1447 aa28.06■■■□□ 2.08
TRA2A-208ENST00000490942 ERCC6Q03468 1493 aa27.95■■■□□ 2.07
TRA2A-208ENST00000490942 AEBP2Q6ZN18 517 aaPredicted RBP27.9■■■□□ 2.06
TRA2A-208ENST00000490942 PRDM2Q13029 1718 aa27.89■■■□□ 2.05
TRA2A-208ENST00000490942 FANCD2Q9BXW9 1451 aa27.87■■■□□ 2.05
TRA2A-208ENST00000490942 CEP164Q9UPV0 1460 aa27.81■■■□□ 2.04
TRA2A-208ENST00000490942 KIF21AQ7Z4S6 1674 aa27.8■■■□□ 2.04
TRA2A-208ENST00000490942 MRC2Q9UBG0 1479 aa27.71■■■□□ 2.03
TRA2A-208ENST00000490942 THOC2Q8NI27 1593 aaKnown RBP27.7■■■□□ 2.03
TRA2A-208ENST00000490942 CUX2O14529 1486 aa27.64■■■□□ 2.01
TRA2A-208ENST00000490942 WDR62O43379 1518 aa27.63■■■□□ 2.01
TRA2A-208ENST00000490942 ABCC8Q09428 1581 aa27.59■■■□□ 2.01
TRA2A-208ENST00000490942 URB2Q14146 1524 aaKnown RBP27.54■■■□□ 2
TRA2A-208ENST00000490942 DNMBPQ6XZF7 1577 aa27.48■■□□□ 1.99
TRA2A-208ENST00000490942 TOPBP1Q92547 1522 aa27.46■■□□□ 1.99
TRA2A-208ENST00000490942 WRNQ14191 1432 aaPredicted RBP eCLIP27.34■■□□□ 1.97
TRA2A-208ENST00000490942 CUX1P39880 1505 aa27.34■■□□□ 1.97
TRA2A-208ENST00000490942 IFT140Q96RY7 1462 aa27.25■■□□□ 1.95
TRA2A-208ENST00000490942 POLA1P09884 1462 aaPredicted RBP27.25■■□□□ 1.95
TRA2A-208ENST00000490942 TOP2BQ02880 1626 aa27.24■■□□□ 1.95
TRA2A-208ENST00000490942 BIVM-ERCC5R4GMW8 1640 aa27.23■■□□□ 1.95
TRA2A-208ENST00000490942 FGD5Q6ZNL6 1462 aa27.21■■□□□ 1.95
TRA2A-208ENST00000490942 SYNJ1O43426 1573 aa27.18■■□□□ 1.94
TRA2A-208ENST00000490942 SOGA1O94964 1423 aa27.15■■□□□ 1.94
TRA2A-208ENST00000490942 TARBP1Q13395 1621 aaKnown RBP27.12■■□□□ 1.93
TRA2A-208ENST00000490942 WDR97A6NE52 1622 aa27.06■■□□□ 1.92
TRA2A-208ENST00000490942 RAD54L2Q9Y4B4 1467 aa27.06■■□□□ 1.92
TRA2A-208ENST00000490942 ABCA10Q8WWZ4 1543 aa27.03■■□□□ 1.92
TRA2A-208ENST00000490942 ZNF608Q9ULD9 1512 aaPredicted RBP27■■□□□ 1.91
TRA2A-208ENST00000490942 EIF4G3O43432 1585 aaKnown RBP26.92■■□□□ 1.9
TRA2A-208ENST00000490942 TDRD9Q8NDG6 1382 aaKnown RBP26.9■■□□□ 1.9
TRA2A-208ENST00000490942 AQRO60306 1485 aaKnown RBP eCLIP26.89■■□□□ 1.91e-8■□□□□ 10.5
TRA2A-208ENST00000490942 TRIM41Q8WV44 630 aa26.88■■□□□ 1.89
TRA2A-208ENST00000490942 ABCA5Q8WWZ7 1642 aa26.85■■□□□ 1.89
TRA2A-208ENST00000490942 GAPVD1Q14C86 1478 aa26.84■■□□□ 1.89
TRA2A-208ENST00000490942 GRIN2BQ13224 1484 aa26.82■■□□□ 1.88
TRA2A-208ENST00000490942 KIF27Q86VH2 1401 aa26.77■■□□□ 1.88
TRA2A-208ENST00000490942 CHIC1Q5VXU3 224 aa26.75■■□□□ 1.87
TRA2A-208ENST00000490942 MAGI1Q96QZ7 1491 aaPredicted RBP26.74■■□□□ 1.87
TRA2A-208ENST00000490942 ERICH3Q5RHP9 1530 aa26.72■■□□□ 1.87
TRA2A-208ENST00000490942 PBRM1Q86U86 1689 aa26.7■■□□□ 1.86
TRA2A-208ENST00000490942 SNAPC4Q5SXM2 1469 aa26.67■■□□□ 1.86
TRA2A-208ENST00000490942 SYNJ2O15056 1496 aa26.62■■□□□ 1.85
TRA2A-208ENST00000490942 IGF1RP08069 1367 aa26.59■■□□□ 1.85
TRA2A-208ENST00000490942 FHAD1B1AJZ9 1412 aa26.58■■□□□ 1.85
TRA2A-208ENST00000490942 ADAMTS12P58397 1594 aa26.56■■□□□ 1.84
TRA2A-208ENST00000490942 EEA1Q15075 1411 aa26.54■■□□□ 1.84
TRA2A-208ENST00000490942 CHMP7Q8WUX9 453 aaPredicted RBP26.52■■□□□ 1.84
TRA2A-208ENST00000490942 CUL7Q14999 1698 aa26.51■■□□□ 1.83
TRA2A-208ENST00000490942 OSCARQ8IYS5 282 aa26.51■■□□□ 1.83
TRA2A-208ENST00000490942 RUSC2Q8N2Y8 1516 aa26.49■■□□□ 1.83
TRA2A-208ENST00000490942 CHD1O14646 1710 aa26.47■■□□□ 1.83
TRA2A-208ENST00000490942 FBLN2P98095 1184 aa26.46■■□□□ 1.83
TRA2A-208ENST00000490942 GRIN2AQ12879 1464 aa26.46■■□□□ 1.83
TRA2A-208ENST00000490942 CARMIL1Q5VZK9 1371 aa26.44■■□□□ 1.82
TRA2A-208ENST00000490942 CSRNP3Q8WYN3 585 aa26.37■■□□□ 1.81
TRA2A-208ENST00000490942 NUP160Q12769 1436 aa26.36■■□□□ 1.81
TRA2A-208ENST00000490942 DNAJC5Q9H3Z4 198 aa26.35■■□□□ 1.81
TRA2A-208ENST00000490942 PRXQ9BXM0 1461 aa26.34■■□□□ 1.81
TRA2A-208ENST00000490942 RAPGEF2Q9Y4G8 1499 aa26.33■■□□□ 1.81
TRA2A-208ENST00000490942 CLASP1Q7Z460 1538 aa26.29■■□□□ 1.8
TRA2A-208ENST00000490942 CEP170Q5SW79 1584 aa26.26■■□□□ 1.79
TRA2A-208ENST00000490942 KIAA0586Q9BVV6 1533 aa26.19■■□□□ 1.78
TRA2A-208ENST00000490942 FAM9AQ8IZU1 332 aaPredicted RBP26.17■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms