RNA–Protein interactions for RNA: ENST00000370848.8

SS18L1-202, Transcript of SS18L1, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best) BASIC

Gene SS18L1, Length 1,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18L1-202ENST00000370848 NISCHQ9Y2I1 1504 aa37.91■■■■□ 3.66
SS18L1-202ENST00000370848 CCDC180Q9P1Z9 1646 aa34.11■■■■□ 3.05
SS18L1-202ENST00000370848 ABCC9O60706 1549 aa33.79■■■■□ 3
SS18L1-202ENST00000370848 RB1CC1Q8TDY2 1594 aa32.34■■■□□ 2.77
SS18L1-202ENST00000370848 NACADO15069 1562 aa32.18■■■□□ 2.74
SS18L1-202ENST00000370848 MYO15BQ96JP2 1530 aa31.9■■■□□ 2.7
SS18L1-202ENST00000370848 DNAJC5BQ9UF47 199 aa31.65■■■□□ 2.66
SS18L1-202ENST00000370848 UNC13AQ9UPW8 1703 aa31.63■■■□□ 2.65
SS18L1-202ENST00000370848 DCAF8L2P0C7V8 631 aa31.53■■■□□ 2.64
SS18L1-202ENST00000370848 ZCCHC6Q5VYS8 1495 aaKnown RBP31.47■■■□□ 2.63
SS18L1-202ENST00000370848 DCAF1Q9Y4B6 1507 aa31.47■■■□□ 2.63
SS18L1-202ENST00000370848 BICRAQ9NZM4 1560 aa31.45■■■□□ 2.63
SS18L1-202ENST00000370848 PABPN1Q86U42 306 aaKnown RBP eCLIP31.35■■■□□ 2.61
SS18L1-202ENST00000370848 SHROOM4Q9ULL8 1493 aa31.17■■■□□ 2.58
SS18L1-202ENST00000370848 SCRIBQ14160 1630 aa30.86■■■□□ 2.53
SS18L1-202ENST00000370848 CC2D2AQ9P2K1 1620 aa30.63■■■□□ 2.49
SS18L1-202ENST00000370848 EIF4G1Q04637 1599 aaKnown RBP30.62■■■□□ 2.49
SS18L1-202ENST00000370848 CECR2Q9BXF3 1484 aa30.5■■■□□ 2.47
SS18L1-202ENST00000370848 NCAPD3P42695 1498 aa29.7■■■□□ 2.35
SS18L1-202ENST00000370848 SMARCA4P51532 1647 aa29.56■■■□□ 2.32
SS18L1-202ENST00000370848 ATAD2BQ9ULI0 1458 aa29.56■■■□□ 2.32
SS18L1-202ENST00000370848 HMGXB3Q12766 1538 aa29.53■■■□□ 2.32
SS18L1-202ENST00000370848 SMARCA2P51531 1590 aa29.52■■■□□ 2.32
SS18L1-202ENST00000370848 BAZ1AQ9NRL2 1556 aaPredicted RBP29.43■■■□□ 2.3
SS18L1-202ENST00000370848 PEG3Q9GZU2 1588 aa29.41■■■□□ 2.3
SS18L1-202ENST00000370848 CUX2O14529 1486 aa29.28■■■□□ 2.28
SS18L1-202ENST00000370848 BAZ1BQ9UIG0 1483 aaKnown RBP29.23■■■□□ 2.27
SS18L1-202ENST00000370848 MROH2BQ7Z745 1585 aa29.16■■■□□ 2.26
SS18L1-202ENST00000370848 ERCC6Q03468 1493 aa29.16■■■□□ 2.26
SS18L1-202ENST00000370848 DNAJC5Q9H3Z4 198 aa29.09■■■□□ 2.25
SS18L1-202ENST00000370848 NESP48681 1621 aa29.07■■■□□ 2.24
SS18L1-202ENST00000370848 LAMC3Q9Y6N6 1575 aa29.03■■■□□ 2.24
SS18L1-202ENST00000370848 THOC2Q8NI27 1593 aaKnown RBP28.92■■■□□ 2.22
SS18L1-202ENST00000370848 WIZO95785 1651 aa28.78■■■□□ 2.2
SS18L1-202ENST00000370848 KIF21AQ7Z4S6 1674 aa28.77■■■□□ 2.2
SS18L1-202ENST00000370848 PDS5BQ9NTI5 1447 aa28.77■■■□□ 2.2
SS18L1-202ENST00000370848 CADPSQ9ULU8 1353 aa28.72■■■□□ 2.19
SS18L1-202ENST00000370848 RSF1Q96T23 1441 aaPredicted RBP28.58■■■□□ 2.17
SS18L1-202ENST00000370848 WDR62O43379 1518 aa28.54■■■□□ 2.16
SS18L1-202ENST00000370848 MRC2Q9UBG0 1479 aa28.53■■■□□ 2.16
SS18L1-202ENST00000370848 TOP2AP11388 1531 aaKnown RBP28.5■■■□□ 2.15
SS18L1-202ENST00000370848 CFTRP13569 1480 aa28.46■■■□□ 2.15
SS18L1-202ENST00000370848 CEP164Q9UPV0 1460 aa28.4■■■□□ 2.14
SS18L1-202ENST00000370848 FANCD2Q9BXW9 1451 aa28.37■■■□□ 2.13
SS18L1-202ENST00000370848 PRDM2Q13029 1718 aa28.24■■■□□ 2.11
SS18L1-202ENST00000370848 URB2Q14146 1524 aaKnown RBP28.17■■■□□ 2.1
SS18L1-202ENST00000370848 CCDC88BA6NC98 1476 aa28.1■■■□□ 2.09
SS18L1-202ENST00000370848 IFT140Q96RY7 1462 aa27.88■■■□□ 2.05
SS18L1-202ENST00000370848 TOPBP1Q92547 1522 aa27.87■■■□□ 2.05
SS18L1-202ENST00000370848 ABCC8Q09428 1581 aa27.86■■■□□ 2.05
SS18L1-202ENST00000370848 DNMBPQ6XZF7 1577 aa27.81■■■□□ 2.04
SS18L1-202ENST00000370848 OSCARQ8IYS5 282 aa27.77■■■□□ 2.04
SS18L1-202ENST00000370848 ZNF608Q9ULD9 1512 aaPredicted RBP27.76■■■□□ 2.03
SS18L1-202ENST00000370848 TARBP1Q13395 1621 aaKnown RBP27.69■■■□□ 2.02
SS18L1-202ENST00000370848 EIF4G3O43432 1585 aaKnown RBP27.68■■■□□ 2.02
SS18L1-202ENST00000370848 POLA1P09884 1462 aaPredicted RBP27.59■■■□□ 2.01
SS18L1-202ENST00000370848 TRIM41Q8WV44 630 aa27.58■■■□□ 2.01
SS18L1-202ENST00000370848 WDR97A6NE52 1622 aa27.51■■□□□ 1.99
SS18L1-202ENST00000370848 RIMBP3CA6NJZ7 1639 aa27.51■■□□□ 1.99
SS18L1-202ENST00000370848 RIMBP3BA6NNM3 1639 aa27.51■■□□□ 1.99
SS18L1-202ENST00000370848 RIMBP3Q9UFD9 1639 aa27.51■■□□□ 1.99
SS18L1-202ENST00000370848 AQRO60306 1485 aaKnown RBP eCLIP27.47■■□□□ 1.995e-7■■■■■ 27.3
SS18L1-202ENST00000370848 ARHGEF11O15085 1522 aa27.43■■□□□ 1.98
SS18L1-202ENST00000370848 CHD1O14646 1710 aa27.43■■□□□ 1.98
SS18L1-202ENST00000370848 CUX1P39880 1505 aa27.41■■□□□ 1.98
SS18L1-202ENST00000370848 FGD5Q6ZNL6 1462 aa27.39■■□□□ 1.98
SS18L1-202ENST00000370848 RAD54L2Q9Y4B4 1467 aa27.39■■□□□ 1.98
SS18L1-202ENST00000370848 SOGA1O94964 1423 aa27.39■■□□□ 1.97
SS18L1-202ENST00000370848 SUPT5HO00267 1087 aaKnown RBP27.38■■□□□ 1.97
SS18L1-202ENST00000370848 TDRD9Q8NDG6 1382 aaKnown RBP27.28■■□□□ 1.96
SS18L1-202ENST00000370848 MAGI1Q96QZ7 1491 aaPredicted RBP27.26■■□□□ 1.95
SS18L1-202ENST00000370848 SNAPC4Q5SXM2 1469 aa27.24■■□□□ 1.95
SS18L1-202ENST00000370848 CLASP1Q7Z460 1538 aa27.21■■□□□ 1.95
SS18L1-202ENST00000370848 GRIN2BQ13224 1484 aa27.21■■□□□ 1.95
SS18L1-202ENST00000370848 ARAP1Q96P48 1450 aa27.17■■□□□ 1.94
SS18L1-202ENST00000370848 ABCA10Q8WWZ4 1543 aa27.16■■□□□ 1.94
SS18L1-202ENST00000370848 ABCA5Q8WWZ7 1642 aa27.15■■□□□ 1.94
SS18L1-202ENST00000370848 SYNJ2O15056 1496 aa27.14■■□□□ 1.94
SS18L1-202ENST00000370848 PBRM1Q86U86 1689 aa27.13■■□□□ 1.93
SS18L1-202ENST00000370848 SYNJ1O43426 1573 aa27.13■■□□□ 1.93
SS18L1-202ENST00000370848 GAPVD1Q14C86 1478 aa27.09■■□□□ 1.93
SS18L1-202ENST00000370848 FBLN2P98095 1184 aa27.09■■□□□ 1.93
SS18L1-202ENST00000370848 BIVM-ERCC5R4GMW8 1640 aa27.06■■□□□ 1.92
SS18L1-202ENST00000370848 TOP2BQ02880 1626 aa27.03■■□□□ 1.92
SS18L1-202ENST00000370848 CYB5RLQ6IPT4 315 aa27.02■■□□□ 1.92
SS18L1-202ENST00000370848 CHMP7Q8WUX9 453 aaPredicted RBP27.01■■□□□ 1.91
SS18L1-202ENST00000370848 WRNQ14191 1432 aaPredicted RBP eCLIP26.98■■□□□ 1.91
SS18L1-202ENST00000370848 ADAMTS12P58397 1594 aa26.9■■□□□ 1.9
SS18L1-202ENST00000370848 GRIN2AQ12879 1464 aa26.87■■□□□ 1.89
SS18L1-202ENST00000370848 NUP160Q12769 1436 aa26.84■■□□□ 1.89
SS18L1-202ENST00000370848 ERICH3Q5RHP9 1530 aa26.84■■□□□ 1.89
SS18L1-202ENST00000370848 FHAD1B1AJZ9 1412 aa26.78■■□□□ 1.88
SS18L1-202ENST00000370848 CEP170Q5SW79 1584 aa26.78■■□□□ 1.88
SS18L1-202ENST00000370848 SHROOM2Q13796 1616 aa26.76■■□□□ 1.87
SS18L1-202ENST00000370848 ERCC6L2Q5T890 1561 aa26.67■■□□□ 1.86
SS18L1-202ENST00000370848 TRHP20396 242 aaPredicted RBP26.63■■□□□ 1.85
SS18L1-202ENST00000370848 RUSC2Q8N2Y8 1516 aa26.54■■□□□ 1.84
SS18L1-202ENST00000370848 CUL7Q14999 1698 aa26.44■■□□□ 1.82
SS18L1-202ENST00000370848 PRG4Q92954 1404 aaPredicted RBP26.44■■□□□ 1.82
SS18L1-202ENST00000370848 KIF27Q86VH2 1401 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms