RNA–Protein interactions for RNA: ENST00000538367.5

TRA2A-211, Transcript of transformer 2 alpha homolog, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene TRA2A, Length 2,142 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-211ENST00000538367 NISCHQ9Y2I1 1504 aa35.21■■■■□ 3.23
TRA2A-211ENST00000538367 CCDC180Q9P1Z9 1646 aa30.85■■■□□ 2.53
TRA2A-211ENST00000538367 HRCP23327 699 aa30.12■■■□□ 2.41
TRA2A-211ENST00000538367 PELP1Q8IZL8 1130 aaKnown RBP29.58■■■□□ 2.33
TRA2A-211ENST00000538367 ZCCHC6Q5VYS8 1495 aaKnown RBP29.55■■■□□ 2.32
TRA2A-211ENST00000538367 ABCC9O60706 1549 aa29.23■■■□□ 2.27
TRA2A-211ENST00000538367 MYO15BQ96JP2 1530 aa29.22■■■□□ 2.27
TRA2A-211ENST00000538367 SHROOM4Q9ULL8 1493 aa29.15■■■□□ 2.26
TRA2A-211ENST00000538367 DCAF1Q9Y4B6 1507 aa29.14■■■□□ 2.26
TRA2A-211ENST00000538367 SUPT5HO00267 1087 aaKnown RBP29.1■■■□□ 2.25
TRA2A-211ENST00000538367 PCGF6Q9BYE7 350 aa29.1■■■□□ 2.25
TRA2A-211ENST00000538367 DCAF8L2P0C7V8 631 aa29.08■■■□□ 2.25
TRA2A-211ENST00000538367 CHIC1Q5VXU3 224 aa29.03■■■□□ 2.24
TRA2A-211ENST00000538367 PPARGC1BQ86YN6 1023 aaKnown RBP28.96■■■□□ 2.23
TRA2A-211ENST00000538367 NACADO15069 1562 aa28.73■■■□□ 2.19
TRA2A-211ENST00000538367 MYT1Q01538 1121 aa28.63■■■□□ 2.17
TRA2A-211ENST00000538367 ZEB1P37275 1124 aaPredicted RBP28.6■■■□□ 2.17
TRA2A-211ENST00000538367 TRIM26Q12899 539 aaPredicted RBP28.54■■■□□ 2.16
TRA2A-211ENST00000538367 RB1CC1Q8TDY2 1594 aa28.54■■■□□ 2.16
TRA2A-211ENST00000538367 SCAF1Q9H7N4 1312 aaKnown RBP28.31■■■□□ 2.12
TRA2A-211ENST00000538367 SCRIBQ14160 1630 aa28.29■■■□□ 2.12
TRA2A-211ENST00000538367 UNC13AQ9UPW8 1703 aa28■■■□□ 2.07
TRA2A-211ENST00000538367 LOC105371045A0A1W2PR82 267 aa28■■■□□ 2.07
TRA2A-211ENST00000538367 ACIN1Q9UKV3 1341 aaKnown RBP27.79■■■□□ 2.04
TRA2A-211ENST00000538367 BICRAQ9NZM4 1560 aa27.65■■■□□ 2.02
TRA2A-211ENST00000538367 CENPBP07199 599 aaPredicted RBP27.55■■■□□ 2
TRA2A-211ENST00000538367 NEUROD1Q13562 356 aa27.49■■□□□ 1.99
TRA2A-211ENST00000538367 PABPN1Q86U42 306 aaKnown RBP eCLIP27.49■■□□□ 1.99
TRA2A-211ENST00000538367 GTF3C3Q9Y5Q9 886 aa27.36■■□□□ 1.97
TRA2A-211ENST00000538367 CECR2Q9BXF3 1484 aa27.34■■□□□ 1.97
TRA2A-211ENST00000538367 BAZ1AQ9NRL2 1556 aaPredicted RBP27.22■■□□□ 1.95
TRA2A-211ENST00000538367 RSF1Q96T23 1441 aaPredicted RBP27.22■■□□□ 1.95
TRA2A-211ENST00000538367 TRIM41Q8WV44 630 aa27.19■■□□□ 1.94
TRA2A-211ENST00000538367 MROH2BQ7Z745 1585 aa27.18■■□□□ 1.94
TRA2A-211ENST00000538367 DIEXFQ68CQ4 756 aaKnown RBP27.18■■□□□ 1.94
TRA2A-211ENST00000538367 SMARCA4P51532 1647 aa27.13■■□□□ 1.93
TRA2A-211ENST00000538367 CCER1Q8TC90 406 aaPredicted RBP27.04■■□□□ 1.92
TRA2A-211ENST00000538367 TTBK1Q5TCY1 1321 aaPredicted RBP26.99■■□□□ 1.91
TRA2A-211ENST00000538367 WIZO95785 1651 aa26.98■■□□□ 1.91
TRA2A-211ENST00000538367 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.91■■□□□ 1.9
TRA2A-211ENST00000538367 EIF4G1Q04637 1599 aaKnown RBP26.84■■□□□ 1.89
TRA2A-211ENST00000538367 WRNQ14191 1432 aaPredicted RBP eCLIP26.83■■□□□ 1.88
TRA2A-211ENST00000538367 PEG3Q9GZU2 1588 aa26.8■■□□□ 1.88
TRA2A-211ENST00000538367 FAM9AQ8IZU1 332 aaPredicted RBP26.77■■□□□ 1.88
TRA2A-211ENST00000538367 CLSPNQ9HAW4 1339 aa26.75■■□□□ 1.87
TRA2A-211ENST00000538367 ZNF316A6NFI3 1004 aaPredicted RBP26.75■■□□□ 1.87
TRA2A-211ENST00000538367 SMARCA2P51531 1590 aa26.7■■□□□ 1.87
TRA2A-211ENST00000538367 TOP2AP11388 1531 aaKnown RBP26.7■■□□□ 1.86
TRA2A-211ENST00000538367 ATAD2BQ9ULI0 1458 aa26.68■■□□□ 1.86
TRA2A-211ENST00000538367 BAZ1BQ9UIG0 1483 aaKnown RBP26.54■■□□□ 1.84
TRA2A-211ENST00000538367 CC2D2AQ9P2K1 1620 aa26.49■■□□□ 1.83
TRA2A-211ENST00000538367 NCAPD3P42695 1498 aa26.48■■□□□ 1.83
TRA2A-211ENST00000538367 HMGXB3Q12766 1538 aa26.47■■□□□ 1.83
TRA2A-211ENST00000538367 CCDC88BA6NC98 1476 aa26.39■■□□□ 1.81
TRA2A-211ENST00000538367 YTHDC1Q96MU7 727 aaKnown RBP26.36■■□□□ 1.81
TRA2A-211ENST00000538367 MIER1Q8N108 512 aa26.36■■□□□ 1.81
TRA2A-211ENST00000538367 CEP162Q5TB80 1403 aa26.35■■□□□ 1.81
TRA2A-211ENST00000538367 TNIKQ9UKE5 1360 aa26.32■■□□□ 1.8
TRA2A-211ENST00000538367 EHMT2Q96KQ7 1210 aa26.3■■□□□ 1.8
TRA2A-211ENST00000538367 ANP32EQ9BTT0 268 aa26.28■■□□□ 1.8
TRA2A-211ENST00000538367 EEA1Q15075 1411 aa26.24■■□□□ 1.79
TRA2A-211ENST00000538367 SUPT16HQ9Y5B9 1047 aaKnown RBP26.16■■□□□ 1.78
TRA2A-211ENST00000538367 BCL11AQ9H165 835 aa26.13■■□□□ 1.77
TRA2A-211ENST00000538367 TSHZ2Q9NRE2 1034 aa26.05■■□□□ 1.76
TRA2A-211ENST00000538367 GOLGA3Q08378 1498 aa25.98■■□□□ 1.75
TRA2A-211ENST00000538367 ABCC8Q09428 1581 aa25.91■■□□□ 1.74
TRA2A-211ENST00000538367 DNAJC5BQ9UF47 199 aa25.86■■□□□ 1.73
TRA2A-211ENST00000538367 CFTRP13569 1480 aa25.85■■□□□ 1.73
TRA2A-211ENST00000538367 PRDM2Q13029 1718 aa25.83■■□□□ 1.73
TRA2A-211ENST00000538367 SOGA1O94964 1423 aa25.83■■□□□ 1.73
TRA2A-211ENST00000538367 CSRNP3Q8WYN3 585 aa25.82■■□□□ 1.72
TRA2A-211ENST00000538367 KIF21BO75037 1637 aa25.82■■□□□ 1.72
TRA2A-211ENST00000538367 CADPSQ9ULU8 1353 aa25.78■■□□□ 1.72
TRA2A-211ENST00000538367 VPS8Q8N3P4 1428 aa25.75■■□□□ 1.71
TRA2A-211ENST00000538367 CEP164Q9UPV0 1460 aa25.74■■□□□ 1.71
TRA2A-211ENST00000538367 HNRNPUL2Q1KMD3 747 aaKnown RBP25.69■■□□□ 1.7
TRA2A-211ENST00000538367 UBTFP17480 764 aaKnown RBP25.68■■□□□ 1.7
TRA2A-211ENST00000538367 LAMC3Q9Y6N6 1575 aa25.66■■□□□ 1.7
TRA2A-211ENST00000538367 DHX57Q6P158 1386 aaKnown RBP25.64■■□□□ 1.69
TRA2A-211ENST00000538367 CLIP1P30622 1438 aa25.63■■□□□ 1.69
TRA2A-211ENST00000538367 NESP48681 1621 aa25.61■■□□□ 1.69
TRA2A-211ENST00000538367 RUSC2Q8N2Y8 1516 aa25.59■■□□□ 1.69
TRA2A-211ENST00000538367 SYNJ1O43426 1573 aa25.56■■□□□ 1.68
TRA2A-211ENST00000538367 CUX2O14529 1486 aa25.52■■□□□ 1.68
TRA2A-211ENST00000538367 FANCD2Q9BXW9 1451 aa25.51■■□□□ 1.67
TRA2A-211ENST00000538367 TOP2BQ02880 1626 aa25.49■■□□□ 1.67
TRA2A-211ENST00000538367 BIVM-ERCC5R4GMW8 1640 aa25.49■■□□□ 1.67
TRA2A-211ENST00000538367 APLP2Q06481 763 aa25.48■■□□□ 1.67
TRA2A-211ENST00000538367 CUX1P39880 1505 aa25.43■■□□□ 1.66
TRA2A-211ENST00000538367 PDS5BQ9NTI5 1447 aa25.43■■□□□ 1.66
TRA2A-211ENST00000538367 RBM19Q9Y4C8 960 aaKnown RBP25.43■■□□□ 1.66
TRA2A-211ENST00000538367 MYT1LQ9UL68 1186 aa25.39■■□□□ 1.66
TRA2A-211ENST00000538367 KIF21AQ7Z4S6 1674 aa25.38■■□□□ 1.65
TRA2A-211ENST00000538367 RRBP1Q9P2E9 1410 aaKnown RBP25.36■■□□□ 1.65
TRA2A-211ENST00000538367 NEFLP07196 543 aa25.34■■□□□ 1.65
TRA2A-211ENST00000538367 FKBP8Q14318 412 aa25.33■■□□□ 1.64
TRA2A-211ENST00000538367 FANCIQ9NVI1 1328 aa25.31■■□□□ 1.64
TRA2A-211ENST00000538367 DNMBPQ6XZF7 1577 aa25.29■■□□□ 1.64
TRA2A-211ENST00000538367 TOPBP1Q92547 1522 aa25.23■■□□□ 1.63
TRA2A-211ENST00000538367 ERICH3Q5RHP9 1530 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms