RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 NISCHQ9Y2I1 1504 aa41.29■■■■■ 4.2
USP48-210ENST00000489108 ABCC9O60706 1549 aa37.87■■■■□ 3.65
USP48-210ENST00000489108 CCDC180Q9P1Z9 1646 aa37.22■■■■□ 3.55
USP48-210ENST00000489108 DNAJC5BQ9UF47 199 aa36.11■■■■□ 3.37
USP48-210ENST00000489108 RB1CC1Q8TDY2 1594 aa35.74■■■■□ 3.31
USP48-210ENST00000489108 NACADO15069 1562 aa35.36■■■■□ 3.25
USP48-210ENST00000489108 DCAF8L2P0C7V8 631 aa35.25■■■■□ 3.23
USP48-210ENST00000489108 PABPN1Q86U42 306 aaKnown RBP eCLIP35.24■■■■□ 3.23
USP48-210ENST00000489108 UNC13AQ9UPW8 1703 aa34.95■■■■□ 3.19
USP48-210ENST00000489108 BICRAQ9NZM4 1560 aa34.75■■■■□ 3.15
USP48-210ENST00000489108 MYO15BQ96JP2 1530 aa34.65■■■■□ 3.14
USP48-210ENST00000489108 CC2D2AQ9P2K1 1620 aa34.15■■■■□ 3.06
USP48-210ENST00000489108 CECR2Q9BXF3 1484 aa34.15■■■■□ 3.06
USP48-210ENST00000489108 SHROOM4Q9ULL8 1493 aa34.12■■■■□ 3.05
USP48-210ENST00000489108 ZCCHC6Q5VYS8 1495 aaKnown RBP34.07■■■■□ 3.05
USP48-210ENST00000489108 DCAF1Q9Y4B6 1507 aa34.02■■■■□ 3.04
USP48-210ENST00000489108 SCRIBQ14160 1630 aa33.95■■■■□ 3.03
USP48-210ENST00000489108 EIF4G1Q04637 1599 aaKnown RBP33.93■■■■□ 3.02
USP48-210ENST00000489108 DNAJC5Q9H3Z4 198 aa33.51■■■□□ 2.95
USP48-210ENST00000489108 CUX2O14529 1486 aa32.8■■■□□ 2.84
USP48-210ENST00000489108 ERCC6Q03468 1493 aa32.71■■■□□ 2.83
USP48-210ENST00000489108 NCAPD3P42695 1498 aa32.68■■■□□ 2.82
USP48-210ENST00000489108 ATAD2BQ9ULI0 1458 aa32.52■■■□□ 2.8
USP48-210ENST00000489108 NESP48681 1621 aa32.39■■■□□ 2.78
USP48-210ENST00000489108 SMARCA2P51531 1590 aa32.35■■■□□ 2.77
USP48-210ENST00000489108 HMGXB3Q12766 1538 aa32.33■■■□□ 2.77
USP48-210ENST00000489108 SMARCA4P51532 1647 aa32.31■■■□□ 2.76
USP48-210ENST00000489108 BAZ1BQ9UIG0 1483 aaKnown RBP32.15■■■□□ 2.74
USP48-210ENST00000489108 THOC2Q8NI27 1593 aaKnown RBP32.09■■■□□ 2.73
USP48-210ENST00000489108 BAZ1AQ9NRL2 1556 aaPredicted RBP32.06■■■□□ 2.72
USP48-210ENST00000489108 LAMC3Q9Y6N6 1575 aa31.99■■■□□ 2.71
USP48-210ENST00000489108 PEG3Q9GZU2 1588 aa31.97■■■□□ 2.71
USP48-210ENST00000489108 KIF21AQ7Z4S6 1674 aa31.9■■■□□ 2.7
USP48-210ENST00000489108 PDS5BQ9NTI5 1447 aa31.86■■■□□ 2.69
USP48-210ENST00000489108 TRIM41Q8WV44 630 aa31.85■■■□□ 2.69
USP48-210ENST00000489108 MROH2BQ7Z745 1585 aa31.84■■■□□ 2.69
USP48-210ENST00000489108 CADPSQ9ULU8 1353 aa31.68■■■□□ 2.66
USP48-210ENST00000489108 MRC2Q9UBG0 1479 aa31.6■■■□□ 2.65
USP48-210ENST00000489108 WDR62O43379 1518 aa31.53■■■□□ 2.64
USP48-210ENST00000489108 WIZO95785 1651 aa31.43■■■□□ 2.62
USP48-210ENST00000489108 CEP164Q9UPV0 1460 aa31.38■■■□□ 2.61
USP48-210ENST00000489108 OSCARQ8IYS5 282 aa31.31■■■□□ 2.6
USP48-210ENST00000489108 FANCD2Q9BXW9 1451 aa31.31■■■□□ 2.6
USP48-210ENST00000489108 CFTRP13569 1480 aa31.18■■■□□ 2.58
USP48-210ENST00000489108 URB2Q14146 1524 aaKnown RBP31.09■■■□□ 2.57
USP48-210ENST00000489108 RSF1Q96T23 1441 aaPredicted RBP30.98■■■□□ 2.55
USP48-210ENST00000489108 TOP2AP11388 1531 aaKnown RBP30.94■■■□□ 2.54
USP48-210ENST00000489108 RIMBP3CA6NJZ7 1639 aa30.9■■■□□ 2.54
USP48-210ENST00000489108 RIMBP3BA6NNM3 1639 aa30.9■■■□□ 2.54
USP48-210ENST00000489108 RIMBP3Q9UFD9 1639 aa30.9■■■□□ 2.54
USP48-210ENST00000489108 ZNF608Q9ULD9 1512 aaPredicted RBP30.82■■■□□ 2.52
USP48-210ENST00000489108 PRDM2Q13029 1718 aa30.77■■■□□ 2.52
USP48-210ENST00000489108 IFT140Q96RY7 1462 aa30.76■■■□□ 2.52
USP48-210ENST00000489108 ARHGEF11O15085 1522 aa30.74■■■□□ 2.51
USP48-210ENST00000489108 CCDC88BA6NC98 1476 aa30.67■■■□□ 2.5
USP48-210ENST00000489108 TOPBP1Q92547 1522 aa30.66■■■□□ 2.5
USP48-210ENST00000489108 CYB5RLQ6IPT4 315 aa30.65■■■□□ 2.5
USP48-210ENST00000489108 EIF4G3O43432 1585 aaKnown RBP30.56■■■□□ 2.48
USP48-210ENST00000489108 ABCC8Q09428 1581 aa30.53■■■□□ 2.48
USP48-210ENST00000489108 AQRO60306 1485 aaKnown RBP eCLIP30.5■■■□□ 2.474e-10■■□□□ 13.4
USP48-210ENST00000489108 TRHP20396 242 aaPredicted RBP30.48■■■□□ 2.47
USP48-210ENST00000489108 DNMBPQ6XZF7 1577 aa30.46■■■□□ 2.47
USP48-210ENST00000489108 CHD1O14646 1710 aa30.46■■■□□ 2.47
USP48-210ENST00000489108 FBLN2P98095 1184 aa30.45■■■□□ 2.47
USP48-210ENST00000489108 TARBP1Q13395 1621 aaKnown RBP30.41■■■□□ 2.46
USP48-210ENST00000489108 ARAP1Q96P48 1450 aa30.41■■■□□ 2.46
USP48-210ENST00000489108 POLA1P09884 1462 aaPredicted RBP30.3■■■□□ 2.44
USP48-210ENST00000489108 RAD54L2Q9Y4B4 1467 aa30.25■■■□□ 2.43
USP48-210ENST00000489108 TDRD9Q8NDG6 1382 aaKnown RBP30.23■■■□□ 2.43
USP48-210ENST00000489108 SOGA1O94964 1423 aa30.2■■■□□ 2.42
USP48-210ENST00000489108 SNAPC4Q5SXM2 1469 aa30.12■■■□□ 2.41
USP48-210ENST00000489108 CHMP7Q8WUX9 453 aaPredicted RBP30.1■■■□□ 2.41
USP48-210ENST00000489108 CLASP1Q7Z460 1538 aa30.08■■■□□ 2.41
USP48-210ENST00000489108 FGD5Q6ZNL6 1462 aa30.04■■■□□ 2.4
USP48-210ENST00000489108 SYNJ1O43426 1573 aa30■■■□□ 2.39
USP48-210ENST00000489108 AEBP2Q6ZN18 517 aaPredicted RBP29.99■■■□□ 2.39
USP48-210ENST00000489108 WDR97A6NE52 1622 aa29.99■■■□□ 2.39
USP48-210ENST00000489108 MAGI1Q96QZ7 1491 aaPredicted RBP29.98■■■□□ 2.39
USP48-210ENST00000489108 GRIN2BQ13224 1484 aa29.95■■■□□ 2.39
USP48-210ENST00000489108 CUX1P39880 1505 aa29.93■■■□□ 2.38
USP48-210ENST00000489108 SYNJ2O15056 1496 aa29.91■■■□□ 2.38
USP48-210ENST00000489108 GAPVD1Q14C86 1478 aa29.83■■■□□ 2.37
USP48-210ENST00000489108 PBRM1Q86U86 1689 aa29.77■■■□□ 2.36
USP48-210ENST00000489108 ABCA10Q8WWZ4 1543 aa29.65■■■□□ 2.34
USP48-210ENST00000489108 ABCA5Q8WWZ7 1642 aa29.63■■■□□ 2.33
USP48-210ENST00000489108 ERCC6L2Q5T890 1561 aa29.63■■■□□ 2.33
USP48-210ENST00000489108 GRIN2AQ12879 1464 aa29.56■■■□□ 2.32
USP48-210ENST00000489108 CEP170Q5SW79 1584 aa29.51■■■□□ 2.31
USP48-210ENST00000489108 NUP160Q12769 1436 aa29.48■■■□□ 2.31
USP48-210ENST00000489108 ADAMTS12P58397 1594 aa29.44■■■□□ 2.3
USP48-210ENST00000489108 WRNQ14191 1432 aaPredicted RBP eCLIP29.44■■■□□ 2.3
USP48-210ENST00000489108 SHROOM2Q13796 1616 aa29.39■■■□□ 2.3
USP48-210ENST00000489108 FHAD1B1AJZ9 1412 aa29.38■■■□□ 2.29
USP48-210ENST00000489108 KIF13AQ9H1H9 1805 aa29.34■■■□□ 2.29
USP48-210ENST00000489108 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
USP48-210ENST00000489108 PRG4Q92954 1404 aaPredicted RBP29.28■■■□□ 2.28
USP48-210ENST00000489108 TOP2BQ02880 1626 aa29.27■■■□□ 2.28
USP48-210ENST00000489108 JPH4Q96JJ6 628 aa29.27■■■□□ 2.28
USP48-210ENST00000489108 BIVM-ERCC5R4GMW8 1640 aa29.27■■■□□ 2.28
USP48-210ENST00000489108 ERICH3Q5RHP9 1530 aa29.25■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 165.1 ms