RNA–Protein interactions for RNA: ENST00000492466.2

SS18L1-205, Transcript of SS18L1, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18L1, Length 899 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18L1-205ENST00000492466 NISCHQ9Y2I1 1504 aa36.51■■■■□ 3.44
SS18L1-205ENST00000492466 CCDC180Q9P1Z9 1646 aa32.69■■■□□ 2.82
SS18L1-205ENST00000492466 ABCC9O60706 1549 aa32.67■■■□□ 2.82
SS18L1-205ENST00000492466 RB1CC1Q8TDY2 1594 aa31.09■■■□□ 2.57
SS18L1-205ENST00000492466 NACADO15069 1562 aa30.91■■■□□ 2.54
SS18L1-205ENST00000492466 DNAJC5BQ9UF47 199 aa30.74■■■□□ 2.51
SS18L1-205ENST00000492466 DCAF8L2P0C7V8 631 aa30.72■■■□□ 2.51
SS18L1-205ENST00000492466 MYO15BQ96JP2 1530 aa30.54■■■□□ 2.48
SS18L1-205ENST00000492466 PABPN1Q86U42 306 aaKnown RBP eCLIP30.45■■■□□ 2.47
SS18L1-205ENST00000492466 UNC13AQ9UPW8 1703 aa30.43■■■□□ 2.46
SS18L1-205ENST00000492466 BICRAQ9NZM4 1560 aa30.28■■■□□ 2.44
SS18L1-205ENST00000492466 ZCCHC6Q5VYS8 1495 aaKnown RBP30.27■■■□□ 2.44
SS18L1-205ENST00000492466 DCAF1Q9Y4B6 1507 aa30.17■■■□□ 2.42
SS18L1-205ENST00000492466 SHROOM4Q9ULL8 1493 aa29.8■■■□□ 2.36
SS18L1-205ENST00000492466 SCRIBQ14160 1630 aa29.78■■■□□ 2.36
SS18L1-205ENST00000492466 CC2D2AQ9P2K1 1620 aa29.53■■■□□ 2.32
SS18L1-205ENST00000492466 EIF4G1Q04637 1599 aaKnown RBP29.47■■■□□ 2.31
SS18L1-205ENST00000492466 CECR2Q9BXF3 1484 aa29.42■■■□□ 2.3
SS18L1-205ENST00000492466 NCAPD3P42695 1498 aa28.59■■■□□ 2.17
SS18L1-205ENST00000492466 ATAD2BQ9ULI0 1458 aa28.5■■■□□ 2.15
SS18L1-205ENST00000492466 SMARCA4P51532 1647 aa28.44■■■□□ 2.14
SS18L1-205ENST00000492466 SMARCA2P51531 1590 aa28.36■■■□□ 2.13
SS18L1-205ENST00000492466 HMGXB3Q12766 1538 aa28.33■■■□□ 2.13
SS18L1-205ENST00000492466 BAZ1AQ9NRL2 1556 aaPredicted RBP28.29■■■□□ 2.12
SS18L1-205ENST00000492466 PEG3Q9GZU2 1588 aa28.21■■■□□ 2.11
SS18L1-205ENST00000492466 BAZ1BQ9UIG0 1483 aaKnown RBP28.16■■■□□ 2.1
SS18L1-205ENST00000492466 MROH2BQ7Z745 1585 aa28.15■■■□□ 2.1
SS18L1-205ENST00000492466 ERCC6Q03468 1493 aa28.14■■■□□ 2.09
SS18L1-205ENST00000492466 DNAJC5Q9H3Z4 198 aa28.13■■■□□ 2.09
SS18L1-205ENST00000492466 CUX2O14529 1486 aa28.13■■■□□ 2.09
SS18L1-205ENST00000492466 NESP48681 1621 aa28.11■■■□□ 2.09
SS18L1-205ENST00000492466 LAMC3Q9Y6N6 1575 aa27.88■■■□□ 2.05
SS18L1-205ENST00000492466 THOC2Q8NI27 1593 aaKnown RBP27.8■■■□□ 2.04
SS18L1-205ENST00000492466 WIZO95785 1651 aa27.78■■■□□ 2.04
SS18L1-205ENST00000492466 PDS5BQ9NTI5 1447 aa27.71■■■□□ 2.03
SS18L1-205ENST00000492466 KIF21AQ7Z4S6 1674 aa27.71■■■□□ 2.03
SS18L1-205ENST00000492466 CADPSQ9ULU8 1353 aa27.7■■■□□ 2.02
SS18L1-205ENST00000492466 RSF1Q96T23 1441 aaPredicted RBP27.58■■■□□ 2.01
SS18L1-205ENST00000492466 MRC2Q9UBG0 1479 aa27.47■■□□□ 1.99
SS18L1-205ENST00000492466 WDR62O43379 1518 aa27.43■■□□□ 1.98
SS18L1-205ENST00000492466 TOP2AP11388 1531 aaKnown RBP27.41■■□□□ 1.98
SS18L1-205ENST00000492466 CFTRP13569 1480 aa27.41■■□□□ 1.98
SS18L1-205ENST00000492466 FANCD2Q9BXW9 1451 aa27.36■■□□□ 1.97
SS18L1-205ENST00000492466 CEP164Q9UPV0 1460 aa27.36■■□□□ 1.97
SS18L1-205ENST00000492466 URB2Q14146 1524 aaKnown RBP27.17■■□□□ 1.94
SS18L1-205ENST00000492466 CCDC88BA6NC98 1476 aa27.15■■□□□ 1.94
SS18L1-205ENST00000492466 PRDM2Q13029 1718 aa27.04■■□□□ 1.92
SS18L1-205ENST00000492466 TOPBP1Q92547 1522 aa26.86■■□□□ 1.89
SS18L1-205ENST00000492466 OSCARQ8IYS5 282 aa26.86■■□□□ 1.89
SS18L1-205ENST00000492466 IFT140Q96RY7 1462 aa26.83■■□□□ 1.89
SS18L1-205ENST00000492466 ZNF608Q9ULD9 1512 aaPredicted RBP26.83■■□□□ 1.89
SS18L1-205ENST00000492466 TRIM41Q8WV44 630 aa26.82■■□□□ 1.88
SS18L1-205ENST00000492466 ABCC8Q09428 1581 aa26.77■■□□□ 1.88
SS18L1-205ENST00000492466 DNMBPQ6XZF7 1577 aa26.74■■□□□ 1.87
SS18L1-205ENST00000492466 TARBP1Q13395 1621 aaKnown RBP26.64■■□□□ 1.85
SS18L1-205ENST00000492466 EIF4G3O43432 1585 aaKnown RBP26.63■■□□□ 1.85
SS18L1-205ENST00000492466 POLA1P09884 1462 aaPredicted RBP26.6■■□□□ 1.85
SS18L1-205ENST00000492466 AQRO60306 1485 aaKnown RBP eCLIP26.58■■□□□ 1.857e-9■■■■□ 23.2
SS18L1-205ENST00000492466 RIMBP3CA6NJZ7 1639 aa26.5■■□□□ 1.83
SS18L1-205ENST00000492466 RIMBP3BA6NNM3 1639 aa26.5■■□□□ 1.83
SS18L1-205ENST00000492466 RIMBP3Q9UFD9 1639 aa26.5■■□□□ 1.83
SS18L1-205ENST00000492466 RAD54L2Q9Y4B4 1467 aa26.5■■□□□ 1.83
SS18L1-205ENST00000492466 SOGA1O94964 1423 aa26.46■■□□□ 1.83
SS18L1-205ENST00000492466 ARHGEF11O15085 1522 aa26.44■■□□□ 1.82
SS18L1-205ENST00000492466 CUX1P39880 1505 aa26.43■■□□□ 1.82
SS18L1-205ENST00000492466 TDRD9Q8NDG6 1382 aaKnown RBP26.42■■□□□ 1.82
SS18L1-205ENST00000492466 FGD5Q6ZNL6 1462 aa26.42■■□□□ 1.82
SS18L1-205ENST00000492466 CHD1O14646 1710 aa26.41■■□□□ 1.82
SS18L1-205ENST00000492466 SUPT5HO00267 1087 aaKnown RBP26.33■■□□□ 1.81
SS18L1-205ENST00000492466 FBLN2P98095 1184 aa26.32■■□□□ 1.8
SS18L1-205ENST00000492466 WDR97A6NE52 1622 aa26.31■■□□□ 1.8
SS18L1-205ENST00000492466 SNAPC4Q5SXM2 1469 aa26.28■■□□□ 1.8
SS18L1-205ENST00000492466 CYB5RLQ6IPT4 315 aa26.24■■□□□ 1.79
SS18L1-205ENST00000492466 GRIN2BQ13224 1484 aa26.21■■□□□ 1.79
SS18L1-205ENST00000492466 MAGI1Q96QZ7 1491 aaPredicted RBP26.21■■□□□ 1.79
SS18L1-205ENST00000492466 ARAP1Q96P48 1450 aa26.2■■□□□ 1.78
SS18L1-205ENST00000492466 CLASP1Q7Z460 1538 aa26.16■■□□□ 1.78
SS18L1-205ENST00000492466 CHMP7Q8WUX9 453 aaPredicted RBP26.16■■□□□ 1.78
SS18L1-205ENST00000492466 ABCA10Q8WWZ4 1543 aa26.14■■□□□ 1.77
SS18L1-205ENST00000492466 GAPVD1Q14C86 1478 aa26.13■■□□□ 1.77
SS18L1-205ENST00000492466 SYNJ2O15056 1496 aa26.12■■□□□ 1.77
SS18L1-205ENST00000492466 ABCA5Q8WWZ7 1642 aa26.09■■□□□ 1.77
SS18L1-205ENST00000492466 SYNJ1O43426 1573 aa26.08■■□□□ 1.77
SS18L1-205ENST00000492466 PBRM1Q86U86 1689 aa26.08■■□□□ 1.77
SS18L1-205ENST00000492466 WRNQ14191 1432 aaPredicted RBP eCLIP26■■□□□ 1.75
SS18L1-205ENST00000492466 TOP2BQ02880 1626 aa25.99■■□□□ 1.75
SS18L1-205ENST00000492466 BIVM-ERCC5R4GMW8 1640 aa25.99■■□□□ 1.75
SS18L1-205ENST00000492466 GRIN2AQ12879 1464 aa25.89■■□□□ 1.73
SS18L1-205ENST00000492466 ADAMTS12P58397 1594 aa25.86■■□□□ 1.73
SS18L1-205ENST00000492466 TRHP20396 242 aaPredicted RBP25.86■■□□□ 1.73
SS18L1-205ENST00000492466 NUP160Q12769 1436 aa25.83■■□□□ 1.73
SS18L1-205ENST00000492466 CEP170Q5SW79 1584 aa25.81■■□□□ 1.72
SS18L1-205ENST00000492466 FHAD1B1AJZ9 1412 aa25.8■■□□□ 1.72
SS18L1-205ENST00000492466 ERICH3Q5RHP9 1530 aa25.79■■□□□ 1.72
SS18L1-205ENST00000492466 ERCC6L2Q5T890 1561 aa25.78■■□□□ 1.72
SS18L1-205ENST00000492466 SHROOM2Q13796 1616 aa25.7■■□□□ 1.7
SS18L1-205ENST00000492466 JPH4Q96JJ6 628 aa25.56■■□□□ 1.68
SS18L1-205ENST00000492466 PRG4Q92954 1404 aaPredicted RBP25.54■■□□□ 1.68
SS18L1-205ENST00000492466 IGF1RP08069 1367 aa25.53■■□□□ 1.68
SS18L1-205ENST00000492466 RUSC2Q8N2Y8 1516 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms